EWM30408.1, cds296 (CDS) Nannochloropsis gaditana

Overview
NameEWM30408.1
Unique Namecds296
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:734868..735246 +
Alignment locationCM002455.1:735366..735421 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30408.1
ProductHypoxia induced protein, domain protein
Orig transcript idgnl|cribi|Naga_100026g20.10662.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:734868..735246 +
CM002455.1supercontigCM002455.1:735366..735421 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR007667Hypoxia_induced_domain
Homology
[Close]
BLAST of EWM30408.1 vs. NCBI_GenBank
Match: gi|585113068|gb|EWM30408.1| (Hypoxia induced protein, domain protein [Nannochloropsis gaditana])

HSP 1 Score: 300.827 bits (769), Expect = 1.963e-103
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0 
Query:    1 MPQTFWSRLWDKTKKDPLIPIGCTATLGCLGAGLYAFKSGEVRDARPGNQFKAGFELLWLVKRQRSGCAPDRSRQTHSSFPAGKTIWRPRCTRIHIVLIPTQKHLSQRMMRARVLAQGFTIVVLMAGSFYNMNIKSSGEPARER 144
            MPQTFWSRLWDKTKKDPLIPIGCTATLGCLGAGLYAFKSGEVRDARPGNQFKAGFELLWLVKRQRSGCAPDRSRQTHSSFPAGKTIWRPRCTRIHIVLIPTQKHLSQRMMRARVLAQGFTIVVLMAGSFYNMNIKSSGEPARER
Sbjct:    1 MPQTFWSRLWDKTKKDPLIPIGCTATLGCLGAGLYAFKSGEVRDARPGNQFKAGFELLWLVKRQRSGCAPDRSRQTHSSFPAGKTIWRPRCTRIHIVLIPTQKHLSQRMMRARVLAQGFTIVVLMAGSFYNMNIKSSGEPARER 144
The following BLAST results are available for this feature:
BLAST of EWM30408.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585113068|gb|EWM30408.1|1.963e-103100.00Hypoxia induced protein, domain protein [Nannochlo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna296rna296Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications