rna2959, rna2959 (mRNA) Nannochloropsis gaditana

Overview
Namerna2959
Unique Namerna2959
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length4173
Alignment locationCM002460.1:359125..359676 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g21.6322.mrna
Orig protein idgnl|cribi|Naga_100034g21.6322
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:359125..359676 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g21gene2839Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27749.1cds2951Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2959rna2959-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2959 ID=rna2959|Name=rna2959|organism=Nannochloropsis gaditana|type=mRNA|length=4173bp
ATGCAAGACGCACAAGCTGATAGCAGCGACTTGAACCGACGCTCTTTACG
GAGCAGTGGCAATCCGCTGGAACTAATAGAGCTTATAATGGCGATATGTC
AAGATCCACGTCACGCCTCGTCGACCGCTGTGAAGAGACAATTGGAATGT
ATCAAAATGAGGACAGCGCGTACACAGCATGTTGCCACCTCTGAGAAACC
GCGATGCGACCCAGAGCTCGAGGCTGTGTATGAAAATCTAGGCCGACTGC
GTGAAAATGAGCGCCGTCACGAGCATGTGTACGCAGAATTGAAACAAGCC
AATCTAGCTCTAACAAAGGAGAAGCAAGCGATCACTATACACGCACATAC
CTACGAAAAGAAAGCTACAGCGTTGGCTCTACAGCTGGAAGCGGCTCAAA
GGGAAGTTGCGGAGGCAAATTGCGCGAAGCGCCGACATGCAGAGCAGGTG
AAGGCGGAGCTTTTGGCACACGTTAATGAGCTTGAAGAAGTCGAGCGTGC
GCGCGAGACTGCGCTGCGTTCCGAGTTAGCGACCGCGAAGCAAGAAAGTG
ACGAGTGGAGGAGGCAGGCAGAGACGGTCAAAGAGGAAATTGTCGCCATG
GGTGTAGCGGATCGCGACAAGCATGAAGCTCTGAAATCTGTGCAGGCAGA
GCTTTTAATTTTAAGTGAAGAATACAAAAATTTGAGTCAACAAATCGCCC
TGGAGAAGAAAGAGGTGGAAGCAGCACAACAAGAGTGTGTTGTGCTGCGA
GAGGCTGACAAGGAAAGCCGGAGAGCGATGAAGATGCGGGAAGACACCCT
GCGAATGGAACTCGCCACAGCAAGCGATGAAATAAATCGTTTGAAAGATC
TTTACAAAAGTACAATAGACTCAGTTCAACGAGGCGACATGTCCATCACG
GCACTGCAAAAGAAACTCGAGGAGGCAAATGGAGAGGTAGAGGCTCTGCG
TGCAGCGACAGAAGAGCAGCGCCGCGAATTGATGTCATTGCGACGTGAAT
GCGCACGAACGAAAATTGAATTGAATAATGCACAAGCTGACGCCTCCACT
CGCATGACGGCCTTAGCGCAAGACCTGACGGATGCCAAAGAGGATGCGAA
CCGGTGCAGGTCTTTGCTCAGCGCAACGTCAGAAGAGGTCAGTAAAGGTC
AGTCTCTGCTCGAAATTTCTATGGAAGAGACTCAGACGGTCCGGGAATCA
TGTAAAGATGAGATCCTTTTATTAGAAGAAGAAGTGAAGCGTTGGAAGGA
GGCGGCAGAAAGGGCGCAGGGAGAAGTCACGGAGAAATCGTCCGTGTTGT
CGAGTCTCCATGAAGAGCACTATCGAGTGCTAGCTGAATCCCAAGATTCA
CGTGACAAAGCATCGCAATGGCAGAAGACAGCTGAGGCTGCAAAGGACAG
AATACAATTGCTGGATGCTGAAATGTTGCGTAAGGAATCGGTGCTGGCTG
ACACAGAGATGCGGATCGAAAAACTGGCAGCCGAGGTAAGGAATGCTCAT
GACGAAGCCGCTCGATTCGAGGCAGCTGCGGAACTCGTCAAGGGGGAAAG
TACTAGCCGCTTTCTTCAGCTTCAAAATTCTTTAGAGGAAATGCGTGCGC
GCGAAGTGACCCTCACAGATGAGCTAGCGACGAAAATGGAGGAGCTGAGA
GAATGTCAAGCAATTGTGGAGGCGAGAGGAAAGGAGATGGCTATGCAGCG
ATATCAAGCCACGGAAAAAGAAAGTGAAACACGCTCGGCACTCGATGCGA
CTGAAGCTCGCGTCGTAGTGTTGGAAGGTGAAAAAAAGAGGTATGAGAAG
GAATTAGAGCATTGGAGATTCTCTGCAGAGACTGCGGAAAGAAAATACGA
GTCCTTACTTGAGGAGAACCAGAACATTCAATCTTCGTTTGAAAGACGGA
TACAAGATGAATTTTCTCGCGCAAATATATTAGAAACTGAACTAATCGCT
ACCAAGAAGGATTTGGTAAACCTCAAATCAGTATTGGAAAGCTCGGATGG
GCAGAAGAGGGAGAAGGAAATTTTCCTTGAGAAATCTTTGGCGGAAACGC
GCTCAATTGGGAAAGATTTGCAAGTACAGCTTGTCGAGGCCGAGCAAAAG
GTGTTTCACTGGAGAGAAAGTACTCAAGCTGCGCATTCAGAATCAAACGA
AGTACGGTCTGCGCTTGATGAAGCACGAACACAAATAGCTACTTTGGAGA
AGGATCTAGAATTGGCACAGCATACTACAATAATGGTAAAGTCAGCCGCG
CAGCCCGCCTTAATGAAAGCCGGATCGACCGACTCTCCAGGCCAAGCACC
GCTTTATCGTGAGCCTGGAGTAGATAGTGAAAGTTCTGCTATGGATCTCG
GTGTAGCGCCAATCGACTCAGAAAAGAATGAATTGGGTCAATTCGAAAGG
AAACGAAGGCTTTATGAGGAGCAGGAGAGGGAACCAGCCTTTGCTGACGA
GATTACTGTCCCCAAGGACAAATGGCTACGCTTGAAAGCCGACCTTGACT
TTTTAAGAGATGAAAATGCGGCGCTCCAATCAAAGCTCAAAGCTGTTGAA
GGCAAGGGAGAGGCAAAATTGTCGGAAGGGAAACTCTTGGGGAAATTGCA
GCGGATGGAGTGGTCGTCATCAAGTTGGAAACCGCCGACGACCTTTCCGG
GAGGCGACCCAACGGATTTTTTTTTCGTTGAAATAGGGACTTGGCGTATT
CGCGCTGGCTGGGTAGAGGTCGGAACTTCAAAGTCATTTCAGACGGTAGA
GTTTCCTTGTATCATTGCACGGCCCAGCAAAGCTTCGGCAGATCTTACCA
CCATCGTTCAACATGCGAGTATTAAAGCGGATGCTATGTACGGACGCTTC
CGGGAAATGGGTGTCTTTATTGGAAAAGATGCGTGGTACTGTGCATTTGA
CCATCCTGACCCAGTGCTGCGTGGGTCACTCAAGTTGGAGGCTCCTTTTG
ACAGGGACAGATTGATACGACCAGCCGATCTCAAACTTTTGCTGAAATAC
GTTTTTGAAAAATGCGAAGTCTGCCTTACAAAGACGCCGCTAGTTGTCAC
CTACAAACCGACTTCTACCCTGAAAGAACGGGAAGAAGTTGTGGAAATGC
TGTTTGAATATTGCGAGGCCTCCAGCGTTCGATTCCTCAACGAAGCGACT
ATGCTGTCTTCGCTTGCCAACGTCGTGACAGCTTTGACAATTGACCTAGG
CGAAGATACCACGCGGGTGGTGCCAATATATGAGCAGATGATTTTAGAAA
AAGGCGTTGAGACGGCAGCTCTCGGTGGCATAGATTTGACAAAGTATATG
GCGTATATGCTCTTATCGCGCCGAAATGAAGTCTACTCCTCATTGGTGGA
ACGTAAAATGTTGGAGGTTGCGCGTCTGATCAAAGAAAGTCACGCATATG
TGGCAGCAGATTTCAATTGTGAAAGAGGGCGTTACGGTACCTTCGAACGG
GAAAAGATTGATGTCATGAAATTTCACCGGGCACAAATTGCTACCGAGGA
GAGCGTGGTTCCCGGTCGTCGTTTGGACATGGCTAGCGTCAGGGAACCGG
ATGGCAAGTCGAACACCTCTAGAGATGGGCGGGGAAGTGTCGAGGTAAGA
CAACCCCTTAAAAATGGAGAAGAGTTGGTGCTTTCGGTTGGATGTGAGCG
CTTTCATTGCGGCGAGCTATTTTTCCGTCCCAAACTGTTCCCGGATATTG
GCCAAACTACGAGCGTGATCGACCTGGTGATGAAAAGTCTCGCTTCAGTT
GATAAGGAACTCTGGCCCCTGCTGCTCTCACACGTGCTGATCGCGGGGCA
ATCAAGCCGTCTGCCTGGATTGGTCGAGCGCATTACAAAAGAGCTGAAAG
ATTCATTACCACCCGAGTTTGCCGGTATTTTAAATATCAACCACTTAGAA
GTTGCTCTAATGGGGGGAAATGTGGAAGAGGAGAGGCGAATTGAAGGGGG
GGAAACAAAACAGTACTTGAAGGAGGAAAAGACTCACATTCCTGACTCCG
ATGAAATTGTTCAAAACATGACTGCTGTTCAAAACATGACTGCTGTTTCT
CGCGGAGCGCTTGCACGCGCGGCCGAGATAATTTCAGAGAGAGGAAGCTG
GATCAGTGCAGAGGTTTACAACATCGATGGGCCTCAAGCTATTGAAGATC
CTGCTTACATCTGTACACCTTGA
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protein sequence of rna2959

>rna2959-protein ID=rna2959-protein|Name=rna2959|organism=Nannochloropsis gaditana|type=polypeptide|length=183bp
MREETRFVNEEGRLVAVSISGSFLRGVTGFQSKGPQLPQRISVPARPAAA
VIEEPTSQEQALIYRLSGDYNSLHADPEIAQTVGFERPILHGLCTFGHSA
RAVLRSGLVPGGNPAMLRSLTARFSKPAFPGETLVTSLWKEDGSQEIVFQ
TRVKERGVTVLEGGLAIIGKNSPVVQEALQSKL
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mRNA from alignment at CM002460.1:359125..359676-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2959 ID=rna2959|Name=rna2959|organism=Nannochloropsis gaditana|type=mRNA|length=552bp|location=Sequence derived from alignment at CM002460.1:359125..359676- (Nannochloropsis gaditana)
ATGCGAGAGGAGACTCGCTTTGTAAATGAAGAGGGCCGGCTCGTAGCTGT
TTCAATTTCTGGAAGTTTCCTGCGCGGTGTTACAGGCTTTCAAAGCAAGG
GGCCTCAGCTTCCACAGCGCATTAGTGTCCCAGCGCGACCAGCCGCTGCC
GTCATTGAAGAGCCTACCTCGCAGGAACAGGCTTTGATATATCGGCTCTC
TGGTGACTACAACTCGTTACATGCCGATCCCGAGATCGCCCAGACAGTAG
GCTTCGAGCGCCCAATTCTCCACGGGCTTTGCACCTTCGGGCATAGCGCA
CGGGCTGTCTTGCGCAGTGGACTGGTGCCTGGGGGCAATCCGGCGATGCT
GCGCTCTCTCACGGCTCGATTCTCCAAGCCGGCTTTTCCGGGGGAGACGT
TGGTAACAAGCTTATGGAAGGAAGACGGCAGCCAAGAGATAGTCTTCCAG
ACAAGAGTCAAGGAGCGTGGAGTGACTGTCCTTGAAGGGGGCCTCGCTAT
AATCGGGAAAAATTCTCCGGTTGTGCAGGAAGCACTTCAAAGCAAATTGT
GA
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Coding sequence (CDS) from alignment at CM002460.1:359125..359676-

>rna2959 ID=rna2959|Name=rna2959|organism=Nannochloropsis gaditana|type=CDS|length=552bp|location=Sequence derived from alignment at CM002460.1:359125..359676- (Nannochloropsis gaditana)
ATGCGAGAGGAGACTCGCTTTGTAAATGAAGAGGGCCGGCTCGTAGCTGT
TTCAATTTCTGGAAGTTTCCTGCGCGGTGTTACAGGCTTTCAAAGCAAGG
GGCCTCAGCTTCCACAGCGCATTAGTGTCCCAGCGCGACCAGCCGCTGCC
GTCATTGAAGAGCCTACCTCGCAGGAACAGGCTTTGATATATCGGCTCTC
TGGTGACTACAACTCGTTACATGCCGATCCCGAGATCGCCCAGACAGTAG
GCTTCGAGCGCCCAATTCTCCACGGGCTTTGCACCTTCGGGCATAGCGCA
CGGGCTGTCTTGCGCAGTGGACTGGTGCCTGGGGGCAATCCGGCGATGCT
GCGCTCTCTCACGGCTCGATTCTCCAAGCCGGCTTTTCCGGGGGAGACGT
TGGTAACAAGCTTATGGAAGGAAGACGGCAGCCAAGAGATAGTCTTCCAG
ACAAGAGTCAAGGAGCGTGGAGTGACTGTCCTTGAAGGGGGCCTCGCTAT
AATCGGGAAAAATTCTCCGGTTGTGCAGGAAGCACTTCAAAGCAAATTGT
GA
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Synonyms
Publications