rna2957, rna2957 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2957
Unique Name	rna2957
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2110
Alignment location	CM002460.1:351840..353946 +

Link to JBrowse

Properties


Property Name	Value
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100034g23.6290.mrna
Orig protein id	gnl\|cribi\|Naga_100034g23.6290
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:351840..353946 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g23	gene2837	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2957	rna2957-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27717.1	cds2949	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:351840..353946+
coding sequence from alignment at CM002460.1:351840..353946+

mRNA sequence

>rna2957 ID=rna2957|Name=rna2957|organism=Nannochloropsis gaditana|type=mRNA|length=2110bp
CTTACACACGCTCACGCCCTCCATTGTCCCATCCGCACAGCGCCTTGCTA
CCAAGTTATTTCACTGTCAATCTTGTGGAGTTTGACAGTTGCTGTCTTTG
GCTTCTCCTCCCCTTCTCTTTCCAAGTGTGTTCCTTCTTCTGATGCCGAC
CAATCGCCTTCGCCGCCGCGTCTCCGGATTGTCACACCTCCCATTCCGAG
TCTTTGTCTTGTACGCATGCCTGCCGTCTATTTCGCGTGCATTTGTAGGA
GGAACTATGTCGAAATTTCCTACATTTCTTCAAACATATTGCCACAAGTT
CACCAAAATATCACTCAACATGCCTGCTGCTGCACGAATACTCTCCCCGG
CATCGGTGATCGAAGCAAAAGAAAATGGCATCGAGGAAGACGATGATGCA
TTCGACTGGTGGAAGCAATGGTATCCCGTCGCACTGACTCGAGATATCGA
TGGCGCCGTGCCAACCAAGGTAATGCTCCTTGGGCGCGACTTGGTGTTAT
GGAGAGAAGGAACCGCGGCGGATGCGAAAAAAGGTGCCGTCCGCACGTGG
AGGTGTTTTGTGGACCGGTGTCCCCACAGACTGGCCCCGTTATCAGAGGG
CCGTATTGATACCCGCACAGGCCACTTACAATGCGCGTACCATGGCTGGG
AATTCTCTGGATCGGGTCAATGCAGCAAAATACCCCAGACAGATCCGGAA
ACAGATCAAGGGGGGGCTGGGGCTCTGCGCTCTCGGCGGGCCTGCGCTAC
AAGTCTACCGACTTTAGAGGCCCAGGGCATGATTTGGGTGTGGCCCGACA
CTTCCAAGGAGGGCGTCGAGGCATCCAAGGCTGTGAAGCCAACGCTGATG
AAGGACGTGGACGAGAAAGAAATGTCTTACCTGGTCGTTTGTAGGGACAT
GCCGTACGGCTTCGATACACTTCTAGAAAATGGTATCGATCCCTCGCACC
TGCCGTTTGCCCACCATAATATTATCAGCAATCGGAATCAAGCGGCATAT
ATTGACACTCAAGTTGACAAAATCTGGAAGGGTGGCTTTGATTCGAACCA
ATTCTATCCCAAGCGTGGCCGAAAGCCGTCTTTACCTCCAATATCAGTCT
CTGAGCAAAACTCTTTGACGAAAGACAAACATGCCGATGCCCATAGAATG
GCTGACTGCATAAATGAATTGTCAGAGCGCTTTCCTGATCGACCCATTGC
ACCTCCTACTGTACGCGTACCGCAATCGCTACATTTTCGGCCACCGACTT
TGTTGTACCAAGTTATAAATGTTACTGCCATCTTTGACAAAATACCCTTC
TTGCCAAAGCGTGAGCGCCTCATTCGTATCGTCACTTATGCTGTCCCAGT
TGCTCCTGGACGGTCACGCGTTATCTACCGCTTTTTGCGGAATTACTTTC
TTCCGCCATTCTCCTGGATGCGATGGCCACCGGAATGGATCCAGCATCAA
CGGATTCTCCGCGTGCTCGATAGCGATACAGTTTTCTTGCATGGCCAAGA
GCGTGAGCGCGCCCTGCTTAGTCCATCCGCAGCAGCTGACGTGGATAGAT
GCTATTTTATGCCCACGGCGGCAGATGGCTCTGTACGAGCGCTGCGGAAG
TGGCTTGCCCGCTTCGGTGGTCCTCGCTGGCTGGTCCCGGACCTGTCATC
CCTGCCCCCCACGCCGGATCGTCGTACTCTCCTCGACCGGTACGAGTCGC
ACACAAAATCGTGCAAAATTTGTCGAGGTGCGCTTAGAAATCTTAAGCGG
CTCAGGCAGCTCATCGGCTTCATGTCCGTCATGGCTTTCTACCTGGGACT
GTTGGGCCAAAGCGTGTATACTCGCTTGGCAGGAGGCTTCTTCACTGTGC
TAGGCATTACGGGGTCTGTTGTCATCAAACGCTTCGAGGAGCGCTTCTAT
TTTCAGCCATGGGATCATGGCCGCAATTAATAATCAGAAAAAGTCCTTTT
CTGCATCTCCCGTCTCATACATACAGCTCCTTGTAAAATTTCGTAAGAGA
AGGTATACATAGTGAAATCCGAACAAGTGCCCCTCCTTTCATTAAAATGA
ATAATACACAACAGAACAGAATCAATGTGCATTGGAAGAAAAATATGTCA
AGGTCACAAC

protein sequence of rna2957

>rna2957-protein ID=rna2957-protein|Name=rna2957|organism=Nannochloropsis gaditana|type=polypeptide|length=380bp
MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQDTQHAPLPTSTTF
TAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSM
IVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQW
VTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRER
RLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINW
YIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNT
RAGALNSYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPPHPAEPAT
EINERVSPAAEVVPLIEAAARGALRAEAST

mRNA from alignment at CM002460.1:351840..353946+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2957 ID=rna2957|Name=rna2957|organism=Nannochloropsis gaditana|type=mRNA|length=2107bp|location=Sequence derived from alignment at CM002460.1:351840..353946+ (Nannochloropsis gaditana)
CCGGACCTTCAAGTTCGCTGTCCCCAGGGCAGATGACGCCAGAGTTCTTC
GTCAATCGACCATGGTCCTGCGCTCCGCCGCGCCTTGATAGTTTTTGAGC
AGCTTCGCGCCCATTCCTCATCTATTGGTTGAATAATAGAGTGTCTTTGG
AGGCCTAGAGATCTACCGCTGGTCGGTGTGGAACGCGCATATTTTCGATG
TTTGCCACCTCATTCTCTTGTTCTTCGTGTAAAACCATAGAGCACTTGTT
TTCTATTAGTTCACACATGTGTCCATCTTCAAATTCGATGTAAGAAACAC
AAAAAAAATCTAGagtccttttttcccttctctatATTTCTGACGAACAG
ATATCAATCTGAATCTTGTCACCCGCAACAATACCATGACGTCTATGTTA
TGTACATATTATCACATGGAATCCCGCTCCTTCAGAGACCATGCTAAGAA
TGTCACAATTACCCCCCAAAACACATAGATCGTCTTGATAATGCACAAAG
GATGTCCATCTGTCAAATCATCGAAACTGGAAACAATCATTTGCGCAGTC
TTTCTCGTACATTACATGCCGCGTTGTTCGGAATTATACACAAACATTAA
CACCTCGCCAACGATATAATTAATCGCATACTTTCCTATCGGATATAGCC
TTCGAGACATTATTTCACCAATTTAATACGAGAAATGGAGGACCTCGGCG
CAACCATACAAGGCATAGGGATCACAGGCACTTTCTTGTTTGCGGTAATG
CTGGCCATTATATCTTGGAGAATCTGCGTCTTCTACTTCCTTCAAGACAC
ACAACATGCGCCTTTGCCGACATCAACGACATTCACCGCTAAACTCTGCT
TTCACATCTTTTTATTTATGGCTGCACTGCTCGATCTCTGCTACTACATA
CCTTTAAGCAGAGAACTTGTTTCAGCAGGTTTCTACTCTGCTCATTTGAT
GGCTCAGTGGGCCGAGCTCGCCGCGTTCTCCATGATTGTCATACTCTGGG
CGCGTCTTCTTAATGCaccgagagggaaggacagcgTCGTAACGTACGTC
GTCGCTCTTGACGCTTTCACCCTCATCTACACTCTCATCGTTATCTGTTT
GGCCATCGTGGTTCAACAGAATGGAGATCAGTGGGTGACTTCAAGTAATC
AACCGTTCgtgtttttctttttcgtgcAGGCTGTGGCGTTATTTGCGTGC
TGCCTGGCACTCTTGTACCACGGTATAAGCCTTCAATATCTTGTCAGGAA
CCACCCCCGCTGGGACCCCATccgaagggaaagacggcTTCGCACGGTTT
TACGAATCAATATTACCCTCATGGCGTGTACTGTCTGTTTCCTACTGCGC
GTAGTCCTTTTGCTCGCACGATTTATTCAAGCAGAAAGCCACCAGCAAGC
GCGATTTTCTGATCCAGCAACTCTGATAAATTGGTACATTTGGTGTAACT
GGGTACCAGATTGCTTGCCGGCTTGTTTTCTGCTGTACACGGTGGGAAAT
GGTGGGGGCCAGGCACGGCGAAACATCGATGGCGGTGTGCCGACTTCAAA
AAACGGAAGCAAGATGGCAATGACATCTAATACAAGAGCCGGAGCGTTGA
ACAGTTACCTACGTGACTGGGAAGAGCCTTTGATTTCCCCATTTGAAACA
TACAAGTCAGTCGTGAACCAGAAGATTTGGCATTCAAATGCAATGGACCA
CTACATTCCACCTCACCCAGCTGAGCCTGCTACGGAGATCAATGAAAGAG
TATCCCCTGCCGCAGAAGTCGTTCCTTTGATTGAAGCCGCCGCGAGGGGT
GCATTGAGGGCAGAAGCGTCGACTTGAGTTTGTCCGAAGAGGATCTGGAT
ATTCACTGTTAAAGAAAGGAATTGAGACACAACGGTCATGAAGGGGCCTT
TCAATAGAAGACAGAGAGCTGAAGCTCTTCCGCATGACAATTGAACAAGA
GGAATTAACTCGTAAAGTAAAGCTCCCTGTCTTTAAAAAATTACAAATTG
GCATTTAATGTTACTAGTCCTTTTTTGACGCAGCACGCATTCCGTCCAAT
ACATCTGTCGTTGAAACGTTCATATCCGCAACACGCTTCCGTAACAAATT
ATCAAGA

Coding sequence (CDS) from alignment at CM002460.1:351840..353946+

>rna2957 ID=rna2957|Name=rna2957|organism=Nannochloropsis gaditana|type=CDS|length=1143bp|location=Sequence derived from alignment at CM002460.1:351840..353946+ (Nannochloropsis gaditana)
ATGGAGGACCTCGGCGCAACCATACAAGGCATAGGGATCACAGGCACTTT
CTTGTTTGCGGTAATGCTGGCCATTATATCTTGGAGAATCTGCGTCTTCT
ACTTCCTTCAAGACACACAACATGCGCCTTTGCCGACATCAACGACATTC
ACCGCTAAACTCTGCTTTCACATCTTTTTATTTATGGCTGCACTGCTCGA
TCTCTGCTACTACATACCTTTAAGCAGAGAACTTGTTTCAGCAGGTTTCT
ACTCTGCTCATTTGATGGCTCAGTGGGCCGAGCTCGCCGCGTTCTCCATG
ATTGTCATACTCTGGGCGCGTCTTCTTAATGCaccgagagggaaggacag
cgTCGTAACGTACGTCGTCGCTCTTGACGCTTTCACCCTCATCTACACTC
TCATCGTTATCTGTTTGGCCATCGTGGTTCAACAGAATGGAGATCAGTGG
GTGACTTCAAGTAATCAACCGTTCgtgtttttctttttcgtgcAGGCTGT
GGCGTTATTTGCGTGCTGCCTGGCACTCTTGTACCACGGTATAAGCCTTC
AATATCTTGTCAGGAACCACCCCCGCTGGGACCCCATccgaagggaaaga
cggcTTCGCACGGTTTTACGAATCAATATTACCCTCATGGCGTGTACTGT
CTGTTTCCTACTGCGCGTAGTCCTTTTGCTCGCACGATTTATTCAAGCAG
AAAGCCACCAGCAAGCGCGATTTTCTGATCCAGCAACTCTGATAAATTGG
TACATTTGGTGTAACTGGGTACCAGATTGCTTGCCGGCTTGTTTTCTGCT
GTACACGGTGGGAAATGGTGGGGGCCAGGCACGGCGAAACATCGATGGCG
GTGTGCCGACTTCAAAAAACGGAAGCAAGATGGCAATGACATCTAATACA
AGAGCCGGAGCGTTGAACAGTTACCTACGTGACTGGGAAGAGCCTTTGAT
TTCCCCATTTGAAACATACAAGTCAGTCGTGAACCAGAAGATTTGGCATT
CAAATGCAATGGACCACTACATTCCACCTCACCCAGCTGAGCCTGCTACG
GAGATCAATGAAAGAGTATCCCCTGCCGCAGAAGTCGTTCCTTTGATTGA
AGCCGCCGCGAGGGGTGCATTGAGGGCAGAAGCGTCGACTTGA

Synonyms

Publications