EWM27717.1, cds2949 (CDS) Nannochloropsis gaditana

Overview
NameEWM27717.1
Unique Namecds2949
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:352524..353666 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27717.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g23.6290.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:352524..353666 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Homology
BLAST of EWM27717.1 vs. NCBI_GenBank
Match: gi|585109990|gb|EWM27717.1| (hypothetical protein Naga_100034g23 [Nannochloropsis gaditana])

HSP 1 Score: 785.023 bits (2026), Expect = 0.000e+0
Identity = 380/380 (100.00%), Postives = 380/380 (100.00%), Query Frame = 0
Query:    1 MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQDTQHAPLPTSTTFTAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNTRAGALNSYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPPHPAEPATEINERVSPAAEVVPLIEAAARGALRAEAST 380
            MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQDTQHAPLPTSTTFTAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNTRAGALNSYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPPHPAEPATEINERVSPAAEVVPLIEAAARGALRAEAST
Sbjct:    1 MEDLGATIQGIGITGTFLFAVMLAIISWRICVFYFLQDTQHAPLPTSTTFTAKLCFHIFLFMAALLDLCYYIPLSRELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAPRGKDSVVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLYTVGNGGGQARRNIDGGVPTSKNGSKMAMTSNTRAGALNSYLRDWEEPLISPFETYKSVVNQKIWHSNAMDHYIPPHPAEPATEINERVSPAAEVVPLIEAAARGALRAEAST 380          
BLAST of EWM27717.1 vs. NCBI_GenBank
Match: gi|299116094|emb|CBN74510.1| (hypothetical protein Esi_0028_0136 [Ectocarpus siliculosus])

HSP 1 Score: 98.2117 bits (243), Expect = 4.456e-19
Identity = 79/291 (27.15%), Postives = 131/291 (45.02%), Query Frame = 0
Query:   13 ITGTFLFAVMLAIISWRICVFYFLQDTQHAPLPTSTTFTAKLCFHIFLFMAALLDLCYY-IPLS-RELVSAGFYSAHLMAQWAELAAFSMIVILWARLLNAP------------------RGKDS---------------VVTYVVALDAFTLIYTLIVICLAIVVQQNGDQWVTSSNQPFVFFFFVQAVALFACCLALLYHGISLQYLVRNHPRWDPIRRERRLRTVLRINITLMACTVCFLLRVVLLLARFIQAESHQQARFSDPATLINWYIWCNWVPDCLPACFLLY 268
            + G  L+ +   ++  R     FL D +      S+T   KL FH+ +  +ALL++ +Y I L+ R  V +G Y+ HL+  W  L +FS++++LW+  L+ P                   G D                   +V A+DA   + T++V+    V          + ++P++      +V LF     L+ +GI LQ  V  HPRW+P+ R +RL+ + RIN  L+ C  CFL+RV +L +       H   R  D   L+ + +   WV   +P   LL+
Sbjct:    9 VCGIVLYTLFFGLVCIR--TRPFLTDRRS----LSSTDRIKLAFHVCINTSALLEIVHYAIELAFRGSVLSG-YACHLVGLWLSLVSFSLVIVLWSNTLHPPAAARQQQRNAQGGTAANGGGSDDEPAGWRCCGKTRISIAAKFVCAIDAIVALATVVVLWTGSV---------PAYSRPYLILMVTHSVTLFLLASWLVLYGIRLQRRVMGHPRWEPLDRRQRLKILCRINGVLVVCAACFLVRVAVLSSALFVRSRH---RAEDMNRLL-FEVLARWVSGLIPGVALLH 279          
The following BLAST results are available for this feature:
BLAST of EWM27717.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109990|gb|EWM27717.1|0.000e+0100.00hypothetical protein Naga_100034g23 [Nannochlorops... [more]
gi|299116094|emb|CBN74510.1|4.456e-1927.15hypothetical protein Esi_0028_0136 [Ectocarpus sil... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2957rna2957Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications