rna2956, rna2956 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2956
Unique Name	rna2956
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1310
Alignment location	CM002460.1:349584..351826 -

Link to JBrowse

Properties


Property Name	Value
Product	pheophorbide a oxygenase
Orig transcript id	gnl\|cribi\|Naga_100034g24.6314.mrna
Orig protein id	gnl\|cribi\|Naga_100034g24.6314
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:349584..351826 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g24	gene2836	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2956	rna2956-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27741.1	cds2948	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:349584..351826-
coding sequence from alignment at CM002460.1:349584..351826-

mRNA sequence

>rna2956 ID=rna2956|Name=rna2956|organism=Nannochloropsis gaditana|type=mRNA|length=1310bp
ATGATTGCCCGAGTGAAGGATCCAATTTGCGAGGCAGGTGGTAGGGGAAG
ACGATGCTAATGCATAGAGAGGGCAGCATACGCTGAGTCCTCGACAAGAC
CCGCCTTTCTGAGAAGGAACAGGGATTCGAGTACAGCTCTTCTTCATAAT
TCTGAGCGCATCTGATTTTGTTCACGCTTTGAACATCTTTACATGGACAG
GGAAGTCTCAGTAATCCTGTGGACATGTTTTTCAAGGACTTCGGGCGGTC
CACAGCTGATCTTTTAAATGACGATTTTACCTACAAGAGAAAGCTGAAAA
TCAAGCTGCCGACTCCAGACGGCGTGACGTGGACCAGCGAGGGGGAGCTG
TCCTCGAAAGGCGTTATGGCGAAGTTGGCAGCAAAATACAAGCATCCATC
CGGCATCTCGCTGGACAAGTTGGAATTCAAAAGCGATGGTCGTGTTTTGG
GGGAAGCTTCTTTAGATGTTGACTCAAAGCTCAAGCTCTGGGTGAGTGCA
GAGGATGGGCGCCAAGACACCGGCAAACCTATCAAGTCTCACGGCAAGCT
GGGTGTAGAGTATGTAAGCCCAGGAATTCTTTCCGCTTTGAGTGACGTCG
ATGTTGTGAACGGCCCTACTGTCAACGGCTCGGTGGTGGTGAATCTGGCC
GGAAAACGCGGGCTACTGGCGGGTTTTCAGGCAACATACAACACCCAACT
GGACGAGAAGGATCAAAAACCTGAGTTCCTCGACTACAATGTGGGTCTAG
CGAAAGTCAACACCAGCTGGGAGGCCTCAGTGCGCTCCTATCACAAAATG
TCCAATCTTCAATTTTCGCTGCTGTCGCGCGTGAATCCTCAGGTCACCTT
CGGCGCCCAGCTCGACTATCAGGTCGACAAGAACACGCAGGGAATGACTA
TTGGAGGATGCTTTCGGCCAGACGCTGATATTCGCCTCTCGGCGAAAATG
TCTTCTACGGCCCTCCTTTCCATCGCCTACACGCAAAATCTCAACAAATT
TGCACACCTTCTCCTCTCGGCTGAGGTGGATGCCAAAGATTGGGCTTCCG
ACTCCCACAAGTTTGGGCTGGGTCTCACTCTGAGCGCGTGATTGGGATAG
AGGGCTATTGCTGGCGGTTCTCTCCTCTCCAGGCACGAGCTTGGGTATTT
CTCTGAATCTTGAGAGGTGGTACGTACTAAGTACCTACACAAAGGGTGCG
AAGAACCAAAAGATAATGGCCCAACATTTGTTTCAAGATATCTTACAAGT
TATTTCAGAAAGATCGAATTAAAAAGAGAAATAAAAATGGTATGTGTTGT
TGTGACCTTG

protein sequence of rna2956

>rna2956-protein ID=rna2956-protein|Name=rna2956|organism=Nannochloropsis gaditana|type=polypeptide|length=595bp
MPTNRLRRRVSGLSHLPFRVFVLYACLPSISRAFVGGTMSKFPTFLQTYC
HKFTKISLNMPAAARILSPASVIEAKENGIEEDDDAFDWWKQWYPVALTR
DIDGAVPTKVMLLGRDLVLWREGTAADAKKGAVRTWRCFVDRCPHRLAPL
SEGRIDTRTGHLQCAYHGWEFSGSGQCSKIPQTDPETDQGGAGALRSRRA
CATSLPTLEAQGMIWVWPDTSKEGVEASKAVKPTLMKDVDEKEMSYLVVC
RDMPYGFDTLLENGIDPSHLPFAHHNIISNRNQAAYIDTQVDKIWKGGFD
SNQFYPKRGRKPSLPPISVSEQNSLTKDKHADAHRMADCINELSERFPDR
PIAPPTVRVPQSLHFRPPTLLYQVINVTAIFDKIPFLPKRERLIRIVTYA
VPVAPGRSRVIYRFLRNYFLPPFSWMRWPPEWIQHQRILRVLDSDTVFLH
GQERERALLSPSAAADVDRCYFMPTAADGSVRALRKWLARFGGPRWLVPD
LSSLPPTPDRRTLLDRYESHTKSCKICRGALRNLKRLRQLIGFMSVMAFY
LGLLGQSVYTRLAGGFFTVLGITGSVVIKRFEERFYFQPWDHGRN

mRNA from alignment at CM002460.1:349584..351826-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2956 ID=rna2956|Name=rna2956|organism=Nannochloropsis gaditana|type=mRNA|length=2243bp|location=Sequence derived from alignment at CM002460.1:349584..351826- (Nannochloropsis gaditana)
CTTACACACGCTCACGCCCTCCATTGTCCCATCCGCACAGCGCCTTGCTA
CCAAGTTATTTCACTGTCAATCTTGTGGAGTTTGACAGTTGCTGTCTTTG
GCTTCTCCTCCCCTTCTCTTTCCAAGTGTGTTCCTTCTTCTGATGCCGAC
CAATCGCCTTCGCCGCCGCGTCTCCGGATTGTCACACCTCCCATTCCGAG
TCTTTGTCTTGTACGCATGCCTGCCGTCTATTTCGCGTGCATTTGTAGGA
GGAACTATGTCGAAATTTCCTACATTTCTTCAAACATATTGCCACAAGTT
CACCAAAATATCACTCAACATGCCTGCTGCTGCACGAATACTCTCCCCGG
CATCGGTGATCGAAGCAAAAGAAAATGGCATCGAGGAAGACGATGATGCA
TTCGACTGGTGGAAGCAATGGTATCCCGTCGCACTGACTCGAGATATCGA
TGGCGCCGTGCCAACCAAGGTAATGCTCCTTGGGCGCGACTTGGTGTTAT
GGAGAGAAGGAACCGCGGCGGATGCGAAAAAAGGTGCCGTCCGCACGTGG
AGGTGTTTTGTGGACCGGTGTCCCCACAGACTGGCCCCGTTATCAGAGGG
CCGTATTGATACCCGCACAGGCCACTTACAATGCGCGTACCATGGCTGGG
AATTCTCTGGATCGGGTCAATGCAGCAAAATACCCCAGACAGATCCGGAA
ACAGATCAAGGGGGGGCTGGGGCTCTGCGCTCTCGGCGGGCCTGCGCTAC
AAGTCTACCGACTTTAGAGGCCCAGGGCATGATTTGGGTGTGGCCCGACA
CTTCCAAGGAGGGCGTCGAGGCATCCAAGGCTGTGAAGCCAACGCTGATG
AAGGACGTGGACGAGAAAGAAATGTCTTACCTGGTCGTTTGTAGGGACAT
GCCGGTGAGTGGATACAAAGTATCACGAGATTGAAGTATCTAGATCTTCA
GGTACACCGGGTCATCTTGAATATTTAATATCACGGAAAAATGACTTTCG
CTTGACAGCCATCTTATCTCTTCTCCGCCATAAACAGTACGGCTTCGATA
CACTTCTAGAAAATGGTATCGATCCCTCGCACCTGCCGTTTGCCCACCAT
AATATTATCAGCAATCGGAATCAAGCGGCATATATTGACACTCAAGTTGA
CAAAATCTGGAAGGGTGGCTTTGATTCGAACCAATTCTATCCCAAGCGTG
GCCGAAAGCCGTCTTTACCTCCAATATCAGTCTCTGAGCAAAACTCTTTG
ACGAAAGACAAACATGCCGATGCCCATAGAATGGCTGACTGCATAAATGA
ATTGTCAGAGCGCTTTCCTGATCGACCCATTGCACCTCCTACTGTACGCG
TACCGCAATCGCTACATTTTCGGCCACCGACTTTGTTGTACCAAGTTATA
AATGTTACTGCCATCTTTGACAAAATACCCTTCTTGCCAAAGCGTGAGCG
CCTCATTCGTATCGTCACTTATGCTGTCCCAGTTGCTCCTGGACGGTCAC
GCGTTATCTACCGCTTTTTGCGGAATTACTTTCTTCCGCCATTCTCCTGG
ATGCGATGGCCACCGGAATGGATCCAGCATCAACGGATTCTCCGCGTGCT
CGATAGCGATACAGTTTTCTTGCATGGCCAAGAGCGTGAGCGCGCCCTGC
TTAGTCCATCCGCAGCAGCTGACGTGGATAGATGCTATTTTATGCCCACG
GCGGCAGATGGCTCTGTACGAGCGCTGCGGAAGTGGCTTGCCCGCTTCGG
TGGTCCTCGCTGGCTGGTCCCGGACCTGTCATCCCTGCCCCCCACGCCGG
ATCGTCGTACTCTCCTCGACCGGTACGAGTCGCACACAAAATCGTGCAAA
ATTTGTCGAGGTGCGCTTAGAAATCTTAAGCGGCTCAGGCAGCTCATCGG
CTTCATGTCCGTCATGGCTTTCTACCTGGGACTGTTGGGCCAAAGCGTGT
ATACTCGCTTGGCAGGAGGCTTCTTCACTGTGCTAGGCATTACGGGGTCT
GTTGTCATCAAACGCTTCGAGGAGCGCTTCTATTTTCAGCCATGGGATCA
TGGCCGCAATTAATAATCAGAAAAAGTCCTTTTCTGCATCTCCCGTCTCA
TACATACAGCTCCTTGTAAAATTTCGTAAGAGAAGGTATACATAGTGAAA
TCCGAACAAGTGCCCCTCCTTTCATTAAAATGAATAATACACAACAGAAC
AGAATCAATGTGCATTGGAAGAAAAATATGTCAAGGTCACAAC

Coding sequence (CDS) from alignment at CM002460.1:349584..351826-

>rna2956 ID=rna2956|Name=rna2956|organism=Nannochloropsis gaditana|type=CDS|length=3576bp|location=Sequence derived from alignment at CM002460.1:349584..351826- (Nannochloropsis gaditana)
TACGGCTTCGATACACTTCTAGAAAATGGTATCGATCCCTCGCACCTGCC
GTTTGCCCACCATAATATTATCAGCAATCGGAATCAAGCGGCATATATTG
ACACTCAAGTTGACAAAATCTGGAAGGGTGGCTTTGATTCGAACCAATTC
TATCCCAAGCGTGGCCGAAAGCCGTCTTTACCTCCAATATCAGTCTCTGA
GCAAAACTCTTTGACGAAAGACAAACATGCCGATGCCCATAGAATGGCTG
ACTGCATAAATGAATTGTCAGAGCGCTTTCCTGATCGACCCATTGCACCT
CCTACTGTACGCGTACCGCAATCGCTACATTTTCGGCCACCGACTTTGTT
GTACCAAGTTATAAATGTTACTGCCATCTTTGACAAAATACCCTTCTTGC
CAAAGCGTGAGCGCCTCATTCGTATCGTCACTTATGCTGTCCCAGTTGCT
CCTGGACGGTCACGCGTTATCTACCGCTTTTTGCGGAATTACTTTCTTCC
GCCATTCTCCTGGATGCGATGGCCACCGGAATGGATCCAGCATCAACGGA
TTCTCCGCGTGCTCGATAGCGATACAGTTTTCTTGCATGGCCAAGAGCGT
GAGCGCGCCCTGCTTAGTCCATCCGCAGCAGCTGACGTGGATAGATGCTA
TTTTATGCCCACGGCGGCAGATGGCTCTGTACGAGCGCTGCGGAAGTGGC
TTGCCCGCTTCGGTGGTCCTCGCTGGCTGGTCCCGGACCTGTCATCCCTG
CCCCCCACGCCGGATCGTCGTACTCTCCTCGACCGGTACGAGTCGCACAC
AAAATCGTGCAAAATTTGTCGAGGTGCGCTTAGAAATCTTAAGCGGCTCA
GGCAGCTCATCGGCTTCATGTCCGTCATGGCTTTCTACCTGGGACTGTTG
GGCCAAAGCGTGTATACTCGCTTGGCAGGAGGCTTCTTCACTGTGCTAGG
CATTACGGGGTCTGTTGTCATCAAACGCTTCGAGGAGCGCTTCTATTTTC
AGCCATGGGATCATGGCCGCAATTAAATGCCGACCAATCGCCTTCGCCGC
CGCGTCTCCGGATTGTCACACCTCCCATTCCGAGTCTTTGTCTTGTACGC
ATGCCTGCCGTCTATTTCGCGTGCATTTGTAGGAGGAACTATGTCGAAAT
TTCCTACATTTCTTCAAACATATTGCCACAAGTTCACCAAAATATCACTC
AACATGCCTGCTGCTGCACGAATACTCTCCCCGGCATCGGTGATCGAAGC
AAAAGAAAATGGCATCGAGGAAGACGATGATGCATTCGACTGGTGGAAGC
AATGGTATCCCGTCGCACTGACTCGAGATATCGATGGCGCCGTGCCAACC
AAGGTAATGCTCCTTGGGCGCGACTTGGTGTTATGGAGAGAAGGAACCGC
GGCGGATGCGAAAAAAGGTGCCGTCCGCACGTGGAGGTGTTTTGTGGACC
GGTGTCCCCACAGACTGGCCCCGTTATCAGAGGGCCGTATTGATACCCGC
ACAGGCCACTTACAATGCGCGTACCATGGCTGGGAATTCTCTGGATCGGG
TCAATGCAGCAAAATACCCCAGACAGATCCGGAAACAGATCAAGGGGGGG
CTGGGGCTCTGCGCTCTCGGCGGGCCTGCGCTACAAGTCTACCGACTTTA
GAGGCCCAGGGCATGATTTGGGTGTGGCCCGACACTTCCAAGGAGGGCGT
CGAGGCATCCAAGGCTGTGAAGCCAACGCTGATGAAGGACGTGGACGAGA
AAGAAATGTCTTACCTGGTCGTTTGTAGGGACATGCCGTACGGCTTCGAT
ACACTTCTAGAAAATGGTATCGATCCCTCGCACCTGCCGTTTGCCCACCA
TAATATTATCAGCAATCGGAATCAAGCGGCATATATTGACACTCAAGTTG
ACAAAATCTGGAAGGGTGGCTTTGATTCGAACCAATTCTATCCCAAGCGT
GGCCGAAAGCCGTCTTTACCTCCAATATCAGTCTCTGAGCAAAACTCTTT
GACGAAAGACAAACATGCCGATGCCCATAGAATGGCTGACTGCATAAATG
AATTGTCAGAGCGCTTTCCTGATCGACCCATTGCACCTCCTACTGTACGC
GTACCGCAATCGCTACATTTTCGGCCACCGACTTTGTTGTACCAAGTTAT
AAATGTTACTGCCATCTTTGACAAAATACCCTTCTTGCCAAAGCGTGAGC
GCCTCATTCGTATCGTCACTTATGCTGTCCCAGTTGCTCCTGGACGGTCA
CGCGTTATCTACCGCTTTTTGCGGAATTACTTTCTTCCGCCATTCTCCTG
GATGCGATGGCCACCGGAATGGATCCAGCATCAACGGATTCTCCGCGTGC
TCGATAGCGATACAGTTTTCTTGCATGGCCAAGAGCGTGAGCGCGCCCTG
CTTAGTCCATCCGCAGCAGCTGACGTGGATAGATGCTATTTTATGCCCAC
GGCGGCAGATGGCTCTGTACGAGCGCTGCGGAAGTGGCTTGCCCGCTTCG
GTGGTCCTCGCTGGCTGGTCCCGGACCTGTCATCCCTGCCCCCCACGCCG
GATCGTCGTACTCTCCTCGACCGGTACGAGTCGCACACAAAATCGTGCAA
AATTTGTCGAGGTGCGCTTAGAAATCTTAAGCGGCTCAGGCAGCTCATCG
GCTTCATGTCCGTCATGGCTTTCTACCTGGGACTGTTGGGCCAAAGCGTG
TATACTCGCTTGGCAGGAGGCTTCTTCACTGTGCTAGGCATTACGGGGTC
TGTTGTCATCAAACGCTTCGAGGAGCGCTTCTATTTTCAGCCATGGGATC
ATGGCCGCAATTAAATGCCGACCAATCGCCTTCGCCGCCGCGTCTCCGGA
TTGTCACACCTCCCATTCCGAGTCTTTGTCTTGTACGCATGCCTGCCGTC
TATTTCGCGTGCATTTGTAGGAGGAACTATGTCGAAATTTCCTACATTTC
TTCAAACATATTGCCACAAGTTCACCAAAATATCACTCAACATGCCTGCT
GCTGCACGAATACTCTCCCCGGCATCGGTGATCGAAGCAAAAGAAAATGG
CATCGAGGAAGACGATGATGCATTCGACTGGTGGAAGCAATGGTATCCCG
TCGCACTGACTCGAGATATCGATGGCGCCGTGCCAACCAAGGTAATGCTC
CTTGGGCGCGACTTGGTGTTATGGAGAGAAGGAACCGCGGCGGATGCGAA
AAAAGGTGCCGTCCGCACGTGGAGGTGTTTTGTGGACCGGTGTCCCCACA
GACTGGCCCCGTTATCAGAGGGCCGTATTGATACCCGCACAGGCCACTTA
CAATGCGCGTACCATGGCTGGGAATTCTCTGGATCGGGTCAATGCAGCAA
AATACCCCAGACAGATCCGGAAACAGATCAAGGGGGGGCTGGGGCTCTGC
GCTCTCGGCGGGCCTGCGCTACAAGTCTACCGACTTTAGAGGCCCAGGGC
ATGATTTGGGTGTGGCCCGACACTTCCAAGGAGGGCGTCGAGGCATCCAA
GGCTGTGAAGCCAACGCTGATGAAGGACGTGGACGAGAAAGAAATGTCTT
ACCTGGTCGTTTGTAGGGACATGCCG

Synonyms

Publications