rna2955, rna2955 (mRNA) Nannochloropsis gaditana

Overview
Namerna2955
Unique Namerna2955
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length627
Alignment locationCM002460.1:347870..349595 +

Link to JBrowse

Properties
Property NameValue
Productvoltage-dependent anion-selective channel protein 2
Orig transcript idgnl|cribi|Naga_100034g25.6284.mrna
Orig protein idgnl|cribi|Naga_100034g25.6284
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:347870..349595 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g25gene2835Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2955rna2955-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27711.1cds2947Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2955 ID=rna2955|Name=rna2955|organism=Nannochloropsis gaditana|type=mRNA|length=627bp
ATGAAGGGTAATTTGTGCTGTTCAAGATCCGAGCGCTGGTCGACTTTCGT
TGCCCGAAGCGCTGCAACGCTTAGCCCGCGCACAGTTCTCACAGCAGTAG
CCGCATCAGACGAGATAGTGCTCGTTGACCATCCGATTTCCACTTGGCGC
ACGGCAAAACTTGCAAAGATCAAATTCCGTTATATCCTTTTGGTTATGTC
ATCGGTCTCGCAGATCGCAAAGCATCAACAGCAACGGGGTGTGAGTTTTG
TAAAAAAGCCAAGCCTTTTTCAGTCCTTACTGAAGCCGGGATGGGAATCG
GCTGAGATCGTCATTCCTTTCTTGCATCGATGTTTGGCCGCGCTTCTGGC
TGTGCTGCTATACACAGCACAACATAATGAAGGTCACGTCCGTTTCCACC
TCCTTGTTATGTCGGCTCTGACTTTGGGACTGTGGGTCTCCGTGACATGG
TTTATACGAGAGTATCGTAAGGCCCTCGCTCTTTCTAAAAAGGAAGGCAA
CTCGAGGGAAATGGCGGCTGTGTCTTCACCACGACGCAGCCCTAATAAAT
CGGGAATATTTGACACGAAAAATACGGCTGCTACGAAGGGAAGACTTGAA
AATTCGTCATCGCGGTACACGGATTAA
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protein sequence of rna2955

>rna2955-protein ID=rna2955-protein|Name=rna2955|organism=Nannochloropsis gaditana|type=polypeptide|length=288bp
MFFKDFGRSTADLLNDDFTYKRKLKIKLPTPDGVTWTSEGELSSKGVMAK
LAAKYKHPSGISLDKLEFKSDGRVLGEASLDVDSKLKLWVSAEDGRQDTG
KPIKSHGKLGVEYVSPGILSALSDVDVVNGPTVNGSVVVNLAGKRGLLAG
FQATYNTQLDEKDQKPEFLDYNVGLAKVNTSWEASVRSYHKMSNLQFSLL
SRVNPQVTFGAQLDYQVDKNTQGMTIGGCFRPDADIRLSAKMSSTALLSI
AYTQNLNKFAHLLLSAEVDAKDWASDSHKFGLGLTLSA
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mRNA from alignment at CM002460.1:347870..349595+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2955 ID=rna2955|Name=rna2955|organism=Nannochloropsis gaditana|type=mRNA|length=1726bp|location=Sequence derived from alignment at CM002460.1:347870..349595+ (Nannochloropsis gaditana)
ATGATTGCCCGAGTGAAGGATCCAATTTGCGAGGCAGGTGGTAGGGGAAG
ACGATGCTAATGCATAGAGAGGGCAGCATACGCTGAGTCCTCGACAAGAC
CCGCCTTTCTGAGAAGGAACAGGGATTCGAGTACAGCTCTTCTTCATAAT
TCTGAGCGCATCTGATTTTGTTCACGCTTTGAACATCTTTACATGGACAG
GGAAGTCTCAGTAATCCTGTGGACATGTTTTTCAAGGACTTCGGGCGGTC
CACAGCTGGTAGGAACGCGCAGCAGGAACGAATTCGGTCAATATGTTTGT
GCTTTCATTCCACTGCTCCGGAAGACACGTGACGAGCTCCCGTGTatctc
tccttccacagaTCTTTTAAATGACGATTTTACCTACAAGAGAAAGCTGA
AAATCAAGCTGCCGACTCCAGACGGCGTGGTAAGTGACCGGTAGCGAGGA
TTTCCGCTGCATGCTGTGAAATTCACGTGAACTTTGCCCTTCATATAGTA
TCCTTCTCGTCCGGGTTAAATTGCGCTTTTTGTTTTTGTATATGCTAGAT
CTCTTGAAAGAGTAGATGCAGCCCAATTTATTGGTGCATGAAGGTGCTTG
TCTCCTCAAATTTGTCTCTCAATTCTGTATACATAAATACGCTGCTTTCG
TCAAGTATCAAGTACGCTTGCTTTTGTCTTAAAAAGGACTGTAAATGGGG
GGAAGActcatccttttccatcattgTTACCTACGACCAAAGACGTGGAC
CAGCGAGGGGGAGCTGTCCTCGAAAGGCGTTATGGCGAAGTTGGCAGCAA
AATACAAGCATCCATCCGGCATCTCGCTGGACAAGTTGGAATTCAAAAGC
GATGGTCGTGTTTTGGGGGAAGCTTCTTTAGATGTTGACTCAAAGCTCAA
GCTCTGGGTGAGTGCAGAGGATGGGCGCCAAGACACCGGCAAACCTATCA
AGTCTCACGGCAAGCTGGGTGTAGAGTATGTAAGCCCAGGAATTCTTTCC
GCTTTGAGTGACGTCGATGTTGTGAACGGCCCTACTGTCAACGGCTCGGT
GGTGGTGAATCTGGCCGGAAAACGCGGGCTACTGGCGGGTTTTCAGGCAA
CATACAACACCCAACTGGACGAGAAGGATCAAAAACCTGAGTTCCTCGAC
TACAATGTGGGTCTAGCGAAAGTCAACACCAGCTGGGAGGCCTCAGTGCG
CTCCTATCACAAAATGTCCAATCTTCAATTTTCGCTGCTGTCGCGCGTGA
ATCCTCAGGTCACCTTCGGCGCCCAGCTCGACTATCAGGTCGACAAGAAC
ACGCAGGGAATGACTATTGGAGGATGCTTTCGGCCAGACGCTGATATTCG
CCTCTCGGCGAAAATGTCTTCTAcggccctcctttccatcgccTACACGC
AAAATCTCAACAAATTTGCAcaccttctcctctcggCTGAGGTGGATGCC
AAAGATTGGGCTTCCGACTCCCACAAGTTTGGGCTGGGTCTCACTCTGAG
CGCGTGATTGGGATAGAGGGCTATTGCTGGCGGttctctcctctccaggC
ACGAGCTTGGGTATTTCTCTGAATCTTGAGAGGTGGTACGTACTAAGTAC
CTACACAAAGGGTGCGAAGAACCAAAAGATAATGGCCCAACATTTGTTTC
AAGATATCTTACAAGTTATTTCAGAAAGATCGAATTAAAAAGAGAAATAA
AAATGGTATGTGTTGTTGTGACCTTG
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Coding sequence (CDS) from alignment at CM002460.1:347870..349595+

>rna2955 ID=rna2955|Name=rna2955|organism=Nannochloropsis gaditana|type=CDS|length=2601bp|location=Sequence derived from alignment at CM002460.1:347870..349595+ (Nannochloropsis gaditana)
ATGTTTTTCAAGGACTTCGGGCGGTCCACAGCTGaTCTTTTAAATGACGA
TTTTACCTACAAGAGAAAGCTGAAAATCAAGCTGCCGACTCCAGACGGCG
TGACGTGGACCAGCGAGGGGGAGCTGTCCTCGAAAGGCGTTATGGCGAAG
TTGGCAGCAAAATACAAGCATCCATCCGGCATCTCGCTGGACAAGTTGGA
ATTCAAAAGCGATGGTCGTGTTTTGGGGGAAGCTTCTTTAGATGTTGACT
CAAAGCTCAAGCTCTGGGTGAGTGCAGAGGATGGGCGCCAAGACACCGGC
AAACCTATCAAGTCTCACGGCAAGCTGGGTGTAGAGTATGTAAGCCCAGG
AATTCTTTCCGCTTTGAGTGACGTCGATGTTGTGAACGGCCCTACTGTCA
ACGGCTCGGTGGTGGTGAATCTGGCCGGAAAACGCGGGCTACTGGCGGGT
TTTCAGGCAACATACAACACCCAACTGGACGAGAAGGATCAAAAACCTGA
GTTCCTCGACTACAATGTGGGTCTAGCGAAAGTCAACACCAGCTGGGAGG
CCTCAGTGCGCTCCTATCACAAAATGTCCAATCTTCAATTTTCGCTGCTG
TCGCGCGTGAATCCTCAGGTCACCTTCGGCGCCCAGCTCGACTATCAGGT
CGACAAGAACACGCAGGGAATGACTATTGGAGGATGCTTTCGGCCAGACG
CTGATATTCGCCTCTCGGCGAAAATGTCTTCTAcggccctcctttccatc
gccTACACGCAAAATCTCAACAAATTTGCAcaccttctcctctcggCTGA
GGTGGATGCCAAAGATTGGGCTTCCGACTCCCACAAGTTTGGGCTGGGTC
TCACTCTGAGCGCGTGAATGTTTTTCAAGGACTTCGGGCGGTCCACAGCT
GaTCTTTTAAATGACGATTTTACCTACAAGAGAAAGCTGAAAATCAAGCT
GCCGACTCCAGACGGCGTGACGTGGACCAGCGAGGGGGAGCTGTCCTCGA
AAGGCGTTATGGCGAAGTTGGCAGCAAAATACAAGCATCCATCCGGCATC
TCGCTGGACAAGTTGGAATTCAAAAGCGATGGTCGTGTTTTGGGGGAAGC
TTCTTTAGATGTTGACTCAAAGCTCAAGCTCTGGGTGAGTGCAGAGGATG
GGCGCCAAGACACCGGCAAACCTATCAAGTCTCACGGCAAGCTGGGTGTA
GAGTATGTAAGCCCAGGAATTCTTTCCGCTTTGAGTGACGTCGATGTTGT
GAACGGCCCTACTGTCAACGGCTCGGTGGTGGTGAATCTGGCCGGAAAAC
GCGGGCTACTGGCGGGTTTTCAGGCAACATACAACACCCAACTGGACGAG
AAGGATCAAAAACCTGAGTTCCTCGACTACAATGTGGGTCTAGCGAAAGT
CAACACCAGCTGGGAGGCCTCAGTGCGCTCCTATCACAAAATGTCCAATC
TTCAATTTTCGCTGCTGTCGCGCGTGAATCCTCAGGTCACCTTCGGCGCC
CAGCTCGACTATCAGGTCGACAAGAACACGCAGGGAATGACTATTGGAGG
ATGCTTTCGGCCAGACGCTGATATTCGCCTCTCGGCGAAAATGTCTTCTA
cggccctcctttccatcgccTACACGCAAAATCTCAACAAATTTGCAcac
cttctcctctcggCTGAGGTGGATGCCAAAGATTGGGCTTCCGACTCCCA
CAAGTTTGGGCTGGGTCTCACTCTGAGCGCGTGAATGTTTTTCAAGGACT
TCGGGCGGTCCACAGCTGaTCTTTTAAATGACGATTTTACCTACAAGAGA
AAGCTGAAAATCAAGCTGCCGACTCCAGACGGCGTGACGTGGACCAGCGA
GGGGGAGCTGTCCTCGAAAGGCGTTATGGCGAAGTTGGCAGCAAAATACA
AGCATCCATCCGGCATCTCGCTGGACAAGTTGGAATTCAAAAGCGATGGT
CGTGTTTTGGGGGAAGCTTCTTTAGATGTTGACTCAAAGCTCAAGCTCTG
GGTGAGTGCAGAGGATGGGCGCCAAGACACCGGCAAACCTATCAAGTCTC
ACGGCAAGCTGGGTGTAGAGTATGTAAGCCCAGGAATTCTTTCCGCTTTG
AGTGACGTCGATGTTGTGAACGGCCCTACTGTCAACGGCTCGGTGGTGGT
GAATCTGGCCGGAAAACGCGGGCTACTGGCGGGTTTTCAGGCAACATACA
ACACCCAACTGGACGAGAAGGATCAAAAACCTGAGTTCCTCGACTACAAT
GTGGGTCTAGCGAAAGTCAACACCAGCTGGGAGGCCTCAGTGCGCTCCTA
TCACAAAATGTCCAATCTTCAATTTTCGCTGCTGTCGCGCGTGAATCCTC
AGGTCACCTTCGGCGCCCAGCTCGACTATCAGGTCGACAAGAACACGCAG
GGAATGACTATTGGAGGATGCTTTCGGCCAGACGCTGATATTCGCCTCTC
GGCGAAAATGTCTTCTAcggccctcctttccatcgccTACACGCAAAATC
TCAACAAATTTGCAcaccttctcctctcggCTGAGGTGGATGCCAAAGAT
TGGGCTTCCGACTCCCACAAGTTTGGGCTGGGTCTCACTCTGAGCGCGTG
A
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Synonyms
Publications