rna2954, rna2954 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2954
Unique Name	rna2954
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1621
Alignment location	CM002460.1:345283..347364 -

Link to JBrowse

Properties


Property Name	Value
Product	Endoplasmic reticulum, protein Pkr1
Orig transcript id	gnl\|cribi\|Naga_100034g26.6296.mrna
Orig protein id	gnl\|cribi\|Naga_100034g26.6296
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:345283..347364 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g26	gene2834	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2954	rna2954-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27723.1	cds2946	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:345283..347364-
coding sequence from alignment at CM002460.1:345283..347364-

mRNA sequence

>rna2954 ID=rna2954|Name=rna2954|organism=Nannochloropsis gaditana|type=mRNA|length=1621bp
CTCAACCGCCCTCAACTGCCTTCAACGGAAATATAAATTCCCCTACGTAT
CTTTGAGGAATCTCTACGACGTTGCTGACTGTTGCGCATTGCAACGTCTC
TGTAGTGCTTAGATAGTGCTCGTTTCTTATATGATGACATAAATGTCCTC
TTTTCCTCGAGTACAAGTCGTATCTTGTTACTTGATTTTTTAAAGGAAGT
TCTTCAAATGTGTTATCACCCGCCCGCCCGTTGAGTAGGCTCCAATGCAT
TTGTCGCGATTATTTGGCTTCGATCTCTCGACCAGTATCGGCTTCATCAT
CTTGTCTGTATGAATAGCCATGACCTTAATAAGCCGTTCAAACTTCCTCC
GTTTCCCTTTTGAGAACCCCTGTAAAAACCATTTATCCGCGCAAACGAAT
TCTGCTCAACCACTTTCTCTTCAAACTTCCCTCCGCACACATCTCATAGC
AGGCTGCTGACCAGTCCATTGTTGGTATATCTTATCGAATTTCAGCAATA
TGAGTGGTCCCATGCCATTAAGCCGGGTGTTCCTTCTTACATTGGTCACA
TTACAAGGCGTCGCTGTTCCTACTTTTGCTGCAAGCGTCAATACAAGAGC
TATACCATCTTTTTCCACAAGTTTAGGGTTCACATGTAACCCTATAGAAA
AAAGTAGTACTCAGAATGTTGGTTGTCTGGTAGGCGAGGCTCAACTGTCT
CTTGACATGTTCGATACAGGAATCGGTCAAGTTGGTTTGCGGATCAACAA
TAATGGCGAACATCGTTCTGTGGTGAGCGAAATTTACGTAGTTGATGAGG
CGGGACTCATGCGACCAAGATCTCTTTCGCTGCAGAGTGATGGCGGGGCG
CAATTTCGAAGCTCCACCAGAGAACACATGTTTCCTATCGGACGAGTTGA
TGATACGAAAGAATGCAAGGCTGACATTGCCTTAATCAGACGAAAGGAAG
TATCGAAAATCGGTCGGTTTTTGAGGAACAACGGAATAAGCAACAATGGG
GCCGCTCTCACGCTTCTATTAAAGACAACCAATGCTGCTTTAGACGCGGA
GCTGCTGGCAGAGGCCTCACGTGAGTGCCTTCTGCGCGTGGCCGTGGTAC
TGACATCTTTAAAAGATGATCCCAGCGCCAAGACAACCTTTTTATCCAGT
TGCATACCAAGCACATTGTGATGACGACATAACCATTGTAAGGAAGCCAG
GGCATGTCCACAAATGAAAAGAAAAAATCAAATAAAACAACTTCCTGTCA
GGGGCGATCACAAACTATCTAATCGATTGTGTACCTTTTAAAAGCTTCAA
AATGACTTCCGGCACAGGCGCCTGTCAATCATTTGATCAATAGAATAACA
TTTCTTTCTTTGCAAATTCTGGTAGCAATGTCCTTTGGTCTATTAACTTC
GTGAACTGCAAGGAGTGAGTCGTGCTGCAGTTAATCCGTGTACCGCGATG
ACGAATTTTCAAGTCTTCCCTTCGTAGCAGCCGTATTTTTCGTGTCAAAT
ATTCCCGATTTATTAGGGCTGCGTCGTGGTGAAGACACAGCCGCCATTTC
CCTCGAGTTGCCTTCCTTTTTAGAAAGAGCGAGGGCCTTACGATACTCTC
GTATAAACCTGGAGTATAAAA

protein sequence of rna2954

>rna2954-protein ID=rna2954-protein|Name=rna2954|organism=Nannochloropsis gaditana|type=polypeptide|length=208bp
MKGNLCCSRSERWSTFVARSAATLSPRTVLTAVAASDEIVLVDHPISTWR
TAKLAKIKFRYILLVMSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWES
AEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTW
FIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLE
NSSSRYTD

mRNA from alignment at CM002460.1:345283..347364-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2954 ID=rna2954|Name=rna2954|organism=Nannochloropsis gaditana|type=mRNA|length=2082bp|location=Sequence derived from alignment at CM002460.1:345283..347364- (Nannochloropsis gaditana)
ATGAAGGGTAAGGAATCTGAAATGAATGCGAAGGGGAGGAAAAATGAAAT
TGTGAACTTGAGCTGCTTTTGTTGAAGTGACAAGAGAAGAGAGCGTTTTT
ATGTGATACAAATAAATAGCCGGTAATGGATCTCAGTACAGGCTCGCTTA
CCCTCCAGAGGGATGAGATCTAGAGGGGGTCGCATTTCTTAAAAGCAGTA
TTACGGTACGGGCGTTTATGCGGATCTGCTTCCGGGCCATATTGTACTTG
CACAACAGATAGGGTGCATACATACAAGCATCGATGTAGGACGAATGATC
GGCGTCCCCTTTGAAGAAATCTCAGTTGCTCCTGCTAATGAGGTGAAGCT
CGAAATAACGAGTACGAAGAAGGGATCGAGATGATTTGAAAACGTATCAC
GTCCTATTTTTTCCTTCGAGCGTTATGCTTATGTGCTGCAAGAGAAAGTA
CCATTGTAAAATTATTTTTCATTAGGGGGGAGGTGTTTTATTTGTTCACA
AGTTGCGCGATGCCGGCGGCATGCCAGAGATGTTAGTACAGTTCACGTTC
ATTAATGAGAGCGTGAGTAAATTGACCATTTGACTTATAATGTACGTATT
TCTATACAGACATATACATACGTATATATATTTATGCGTATTATTTATTT
TTAGCAGTATTATAATGGTTGGCTTCATCGCAAGACAGCTGCAAAGTAGA
AATTGACTAGGGGATGAGAGGAAGCCGGGGTTAATGTCGCCACGGGAAAG
CTACCCGGCCGGCTCAGTAACTTTTAGAGGGCTGGACCTCTTATGCGTGC
GAAGCAGGGTACACGCTCTGATTTATTGGTGTACACTGATGTAATCGCAT
AGCAGGTAATTTGTGCTGTTCAAGATCCGAGCGCTGGTCGACTTTCGTTG
CCCGAAGCGCTGCAACGCTTAGCCCGCGCACAGTTCTCACAGCAGTAGCC
GCATCAGACGAGGTAAAGCGCCTTGAGAATTTCTTTAGCTCAGATTACAA
ACATAAATTTAATTATATTATGTCTTCTATCTTGTAGCCTTTAAGAGTTT
TTGCTATCTATGTTTCCCGGAAGACCGCGTGTTGGCTTGCTACCACGCTG
ACAACCTTTTCATGCTCTGTGCGTAGCGCTCTCCGAGGCACGTTTGCTCT
CCTGTCTGTTTTAGCTACTTCCCCTTGGGGCAATGCCTCAAACTACAGGC
TCCTTAATAGTGTAAAAAATAGTATAACTACAGTCCCCTTCATAGTGTAA
AAAATAGTGTAAGAGAGGGACACAAATAGAAATTGCGCGTGGGGTTCAGC
CGGAAATGAATATGGTGAGTACTATTGTGTGTACATGTTCACATCCGTCA
TTTCCGCCATTCCATACAGATAGTGCTCGTTGACCATCCGATTTCCACTT
GGCGCACGGCAAAACTTGCAAAGATCAAATTCCGTTATATCCTTTTGGTT
ATGTCATCGGTCTCGCAGATCGCAAAGCATCAACAGCAACGGGGTGTGAG
TTTTGTAAAAAAGCCAAGCCTTTTTCAGTCCTTACTGAAGCCGGGATGGG
AATCGGCTGAGATCGTCATTCCTTTCTTGCATCGATGTTTGGCCGCGCTT
CTGGCTGTGCTGCTATACACAGCACAACATAATGAAGGTCACGTCCGTTT
CCACCTCCTTGTTATGTCGGCTCTGACTTTGGGACTGTGGGTCTCCGTGA
CATGGTATGTATGTGTTTTGTATGCTTTGTAAAGGTTGGAGTAAGACATA
CGCCGTGCATAATGATTTACCTGATATGCTTCCTAGGAAGAGCTAAATTC
ATAAACGCAGGCATTAGAAACGTCAAAAAAAATATGGAGAACCATTTGAC
ATTCAGGGACAACCAAAGACTTCTTTTACAACTTTGCGCCTTTTTATACT
CCAGGTTTATACGAGAGTATCGTAAGGCCCTCGCTCTTTCTAAAAAGGAA
GGCAACTCGAGGGAAATGGCGGCTGTGTCTTCACCACGACGCAGCCCTAA
TAAATCGGGAATATTTGACACGAAAAATACGGCTGCTACGAAGGGAAGAC
TTGAAAATTCGTCATCGCGGTACACGGATTAA

Coding sequence (CDS) from alignment at CM002460.1:345283..347364-

>rna2954 ID=rna2954|Name=rna2954|organism=Nannochloropsis gaditana|type=CDS|length=2508bp|location=Sequence derived from alignment at CM002460.1:345283..347364- (Nannochloropsis gaditana)
GTTTATACGAGAGTATCGTAAGGCCCTCGCTCTTTCTAAAAAGGAAGGCA
ACTCGAGGGAAATGGCGGCTGTGTCTTCACCACGACGCAGCCCTAATAAA
TCGGGAATATTTGACACGAAAAATACGGCTGCTACGAAGGGAAGACTTGA
AAATTCGTCATCGCGGTACACGGATTAAATAGTGCTCGTTGACCATCCGA
TTTCCACTTGGCGCACGGCAAAACTTGCAAAGATCAAATTCCGTTATATC
CTTTTGGTTATGTCATCGGTCTCGCAGATCGCAAAGCATCAACAGCAACG
GGGTGTGAGTTTTGTAAAAAAGCCAAGCCTTTTTCAGTCCTTACTGAAGC
CGGGATGGGAATCGGCTGAGATCGTCATTCCTTTCTTGCATCGATGTTTG
GCCGCGCTTCTGGCTGTGCTGCTATACACAGCACAACATAATGAAGGTCA
CGTCCGTTTCCACCTCCTTGTTATGTCGGCTCTGACTTTGGGACTGTGGG
TCTCCGTGACATGGTAATTTGTGCTGTTCAAGATCCGAGCGCTGGTCGAC
TTTCGTTGCCCGAAGCGCTGCAACGCTTAGCCCGCGCACAGTTCTCACAG
CAGTAGCCGCATCAGACGAGATGAAGGGTTTATACGAGAGTATCGTAAGG
CCCTCGCTCTTTCTAAAAAGGAAGGCAACTCGAGGGAAATGGCGGCTGTG
TCTTCACCACGACGCAGCCCTAATAAATCGGGAATATTTGACACGAAAAA
TACGGCTGCTACGAAGGGAAGACTTGAAAATTCGTCATCGCGGTACACGG
ATTAAATAGTGCTCGTTGACCATCCGATTTCCACTTGGCGCACGGCAAAA
CTTGCAAAGATCAAATTCCGTTATATCCTTTTGGTTATGTCATCGGTCTC
GCAGATCGCAAAGCATCAACAGCAACGGGGTGTGAGTTTTGTAAAAAAGC
CAAGCCTTTTTCAGTCCTTACTGAAGCCGGGATGGGAATCGGCTGAGATC
GTCATTCCTTTCTTGCATCGATGTTTGGCCGCGCTTCTGGCTGTGCTGCT
ATACACAGCACAACATAATGAAGGTCACGTCCGTTTCCACCTCCTTGTTA
TGTCGGCTCTGACTTTGGGACTGTGGGTCTCCGTGACATGGTAATTTGTG
CTGTTCAAGATCCGAGCGCTGGTCGACTTTCGTTGCCCGAAGCGCTGCAA
CGCTTAGCCCGCGCACAGTTCTCACAGCAGTAGCCGCATCAGACGAGATG
AAGGGTTTATACGAGAGTATCGTAAGGCCCTCGCTCTTTCTAAAAAGGAA
GGCAACTCGAGGGAAATGGCGGCTGTGTCTTCACCACGACGCAGCCCTAA
TAAATCGGGAATATTTGACACGAAAAATACGGCTGCTACGAAGGGAAGAC
TTGAAAATTCGTCATCGCGGTACACGGATTAAATAGTGCTCGTTGACCAT
CCGATTTCCACTTGGCGCACGGCAAAACTTGCAAAGATCAAATTCCGTTA
TATCCTTTTGGTTATGTCATCGGTCTCGCAGATCGCAAAGCATCAACAGC
AACGGGGTGTGAGTTTTGTAAAAAAGCCAAGCCTTTTTCAGTCCTTACTG
AAGCCGGGATGGGAATCGGCTGAGATCGTCATTCCTTTCTTGCATCGATG
TTTGGCCGCGCTTCTGGCTGTGCTGCTATACACAGCACAACATAATGAAG
GTCACGTCCGTTTCCACCTCCTTGTTATGTCGGCTCTGACTTTGGGACTG
TGGGTCTCCGTGACATGGTAATTTGTGCTGTTCAAGATCCGAGCGCTGGT
CGACTTTCGTTGCCCGAAGCGCTGCAACGCTTAGCCCGCGCACAGTTCTC
ACAGCAGTAGCCGCATCAGACGAGATGAAGGGTTTATACGAGAGTATCGT
AAGGCCCTCGCTCTTTCTAAAAAGGAAGGCAACTCGAGGGAAATGGCGGC
TGTGTCTTCACCACGACGCAGCCCTAATAAATCGGGAATATTTGACACGA
AAAATACGGCTGCTACGAAGGGAAGACTTGAAAATTCGTCATCGCGGTAC
ACGGATTAAATAGTGCTCGTTGACCATCCGATTTCCACTTGGCGCACGGC
AAAACTTGCAAAGATCAAATTCCGTTATATCCTTTTGGTTATGTCATCGG
TCTCGCAGATCGCAAAGCATCAACAGCAACGGGGTGTGAGTTTTGTAAAA
AAGCCAAGCCTTTTTCAGTCCTTACTGAAGCCGGGATGGGAATCGGCTGA
GATCGTCATTCCTTTCTTGCATCGATGTTTGGCCGCGCTTCTGGCTGTGC
TGCTATACACAGCACAACATAATGAAGGTCACGTCCGTTTCCACCTCCTT
GTTATGTCGGCTCTGACTTTGGGACTGTGGGTCTCCGTGACATGGTAATT
TGTGCTGTTCAAGATCCGAGCGCTGGTCGACTTTCGTTGCCCGAAGCGCT
GCAACGCTTAGCCCGCGCACAGTTCTCACAGCAGTAGCCGCATCAGACGA
GATGAAGG

Synonyms

Publications