EWM27723.1, cds2946 (CDS) Nannochloropsis gaditana

Overview
NameEWM27723.1
Unique Namecds2946
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:347358..347364 -
Alignment locationCM002460.1:346403..346509 -
Alignment locationCM002460.1:345661..345995 -
Alignment locationCM002460.1:345283..345460 -

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Properties
Property NameValue
Protein idEWM27723.1
ProductEndoplasmic reticulum, protein Pkr1
Orig transcript idgnl|cribi|Naga_100034g26.6296.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:347358..347364 -
CM002460.1supercontigCM002460.1:346403..346509 -
CM002460.1supercontigCM002460.1:345661..345995 -
CM002460.1supercontigCM002460.1:345283..345460 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0016043cellular component organization
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR013945ER_Pkr1
Homology
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BLAST of EWM27723.1 vs. NCBI_GenBank
Match: gi|585109996|gb|EWM27723.1| (Endoplasmic reticulum, protein Pkr1 [Nannochloropsis gaditana])

HSP 1 Score: 426.787 bits (1096), Expect = 3.582e-151
Identity = 208/208 (100.00%), Postives = 208/208 (100.00%), Query Frame = 0 
Query:    1 MKGNLCCSRSERWSTFVARSAATLSPRTVLTAVAASDEIVLVDHPISTWRTAKLAKIKFRYILLVMSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWESAEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTWFIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLENSSSRYTD 208
            MKGNLCCSRSERWSTFVARSAATLSPRTVLTAVAASDEIVLVDHPISTWRTAKLAKIKFRYILLVMSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWESAEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTWFIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLENSSSRYTD
Sbjct:    1 MKGNLCCSRSERWSTFVARSAATLSPRTVLTAVAASDEIVLVDHPISTWRTAKLAKIKFRYILLVMSSVSQIAKHQQQRGVSFVKKPSLFQSLLKPGWESAEIVIPFLHRCLAALLAVLLYTAQHNEGHVRFHLLVMSALTLGLWVSVTWFIREYRKALALSKKEGNSREMAAVSSPRRSPNKSGIFDTKNTAATKGRLENSSSRYTD 208
The following BLAST results are available for this feature:
BLAST of EWM27723.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585109996|gb|EWM27723.1|3.582e-151100.00Endoplasmic reticulum, protein Pkr1 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2954rna2954Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications