rna295, rna295 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna295
Unique Name	rna295
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1257
Alignment location	CM002455.1:732143..734727 -

Link to JBrowse

Properties


Property Name	Value
Product	tho complex subunit 5
Orig transcript id	gnl\|cribi\|Naga_100026g21.10623.mrna
Orig protein id	gnl\|cribi\|Naga_100026g21.10623
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002455.1	supercontig	CM002455.1:732143..734727 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100026g21	gene284	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM30369.1	cds295	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna295	rna295-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002455.1:732143..734727-
coding sequence from alignment at CM002455.1:732143..734727-

mRNA sequence

>rna295 ID=rna295|Name=rna295|organism=Nannochloropsis gaditana|type=mRNA|length=1257bp
GCCGACCCATATTAAAACCCAGTAAAGCATTCACCAACGAACGAGGGGCT
CTTTTGTGTGTGTTTTGAGTATGATTTTACACCTCTTTGTGCATCTCTCT
GGTCTTCCTTGGTTCCCGTAGTTTGGGCATCATCACTCACGCTTCCCTCG
ACCTTCGTTCTTCCTTTACAACCCCGACACAGGTCAGAGTTGGAGTAATC
AAAAAAGGGGTGCACGAATGAGATACATTAGATTTTGACAGATATCCTTT
TACTGGAGAGGGTTCAAGGGATCAAATGAACAGCGGGCGTTGGCAATCTA
GGGAGGGATCGGAGGTTGGCAGCGAGCGAAAGCGTGTCCATCCTTTTGGC
TGTCACACCTCACGAACCAACTGTTAGCAGGCCAGCACAGATGACATACG
AGAATCTTTATTATATCGTAGACCTTATGTGGATGACCTTTGGTGCTGTG
TGTCTGGCAATGAACCTGAAGGCTTGATAGGGAGGTGGCTCCCGTAAACC
CTTTGTCCTTTCCACGCTGAGTCTCCCCCGCACTGTCCTTTATACAAATT
GTTACAGTCATCTGCAGGCGGTTTTTCTTTGGCAGGCAAAGATGGTGATC
AAGACAGACATGTGCAGCTTCTCGGAGTACCGGGTCTACCCGGGACACGG
CATCCGCTTCGTGCGCCGTGACAGTGCCACGCTCGTGTTCTCCACGGCCA
AGACCAAGGGCCTTTACAACCAGCGTAAGAAGGCGGCCCGGCTGGTCTGG
ACTCAGGGCTGGCGCCGACTCCACAAGAAAATCAAAGTCGAAGAGATCCA
GAAACGCCGAACTCGGCGGACGACGAAGTTTCAACGAGCTATCGTTGGGG
CTTCCCTAGAAGAGATCAAGAAGAAGCGCGCCCAGAAGCCCGAGCGCAAC
GCTCAGCGGGAGGCGGCCCTCAAAGAAGTGAAGGAGCGTGCGAAGGCAAT
GAAGGCGAAGCAGGCTAAGATGAAGCCCGCGGGCGCCGCGGCGGGAGGGA
GCAAGCAGGCGAGCAAGACCAAGGCGGCCCCCAAGGGGCGAGGCACGCAG
CGCTAGGCGAGGTCGGTTGGGGGAGATCGGAGGCTCTTGTCGCGGGAGTG
AGGCCTGGGTAGCGGGAGGTTGGACCGGAAGGGGGGCGGGAGGTTGGGCC
GGAAGGGGGCTGGGTGGGGCGGTGCGTGACCGCGGGGTAGTGAGAGTGGG
GAGATACGAGGCCTCCGGAGGGAAAGAAAATAAACACGCCGTCAGTGGGG
TCAGCCG

protein sequence of rna295

>rna295-protein ID=rna295-protein|Name=rna295|organism=Nannochloropsis gaditana|type=polypeptide|length=772bp
MSVSFQSHSIKQDTVPALRRHLTVIRLEAWGSACSSGSAATRGMTGKTTL
RAVHEDLVELVHRLKGTLGDQNSPVPGKDEMQELITEAAVTLIEYKSMAR
ESAMAVGGCRTEMQSKKKEVDDRHLQLQNLMYEKDHLQRTIQSLRDFPMA
ELTKIEEDEGAPLLPGLTEGGQVRLLPVEEHRLSLERLQEEKGARIQLHE
EHVAAQTKRAALSREVDELRAMLGTSLPRQIEELDALCTGIHERIPGLSI
AAPFGGFPPEQVQALPRPMYVLLGRLQAYRQAQDPAARRTRVEVFPCGDE
QAPLPQCVAALGTEAARLKAKRAQLGPSASSPSTSGEGEGAEEEGGSLIL
VDQLAIRVEFPPLGPDGGLQENAGDWDVLIFFFAPEGRELLVTAPGRHPQ
ALVNLLPGDTGADPSAAPTSHRAQGTHAGSRRLNRKRAVDTDKISGASTA
TFRSPPSPRSFLWLQWLGGTSPFPPEFVDLGLAYTSSCILNRLRVRLRSQ
RSLDGVLESLRKRPGDVPRDASSPRLFPGVEDAGVGRWLVSSFTEVTRSA
LSGEEPGEGREEGGGKGEDQGDTDPFAEAPCGVLGGEEGEEAGGPDEVQT
RNADREGPATVRSTEGGVAWERAGARYFDLALRAQADTKKGGGGRKEKAP
EGPELHVAVEITPEYPIRPPRFRLLSPSSLAASTLAAHAPFREAFAHILV
EVNVHYEELLMGGSVRDWLFPHQVHKLLFCLEASGAVGGSGSSGGGSERL
RWGKDRRRGYSFDTHCALLMPR

mRNA from alignment at CM002455.1:732143..734727-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna295 ID=rna295|Name=rna295|organism=Nannochloropsis gaditana|type=mRNA|length=2585bp|location=Sequence derived from alignment at CM002455.1:732143..734727- (Nannochloropsis gaditana)
CACGTCAAGGTCTTTTCCGCCCCTCGCAGCACCCCTCGCCAGCGACTCCT
TCACACTTTCCTGGAGAGAGAACTCATGACCAATGTCTGTTTCGTTCCAA
TCACACTCAATAAAGCAGGATACTGTCCCTGCTCTTCGCCGTCATCTCAC
CGTCATCCGCCTGGAGGCCTGGGGCTCAGCTTGTTCATCCGGCAGTGCCG
CGACTCGAGGCATGACGGGGAAGACGACCCTGCGGGCCGTCCACGAGGAT
TTGGTCGAGCTGGTGCACCGCTTGAAAGGTACCTTGGGGGACCAAAACAG
TCCTGTCCCCGGAAAAGATGAAATGCAAGAGCTTATCACAGAAGCGGCAG
TAACACTCATCGAGTACAAGAGTATGGCTAGAGAGAGCGCCATGGCTGTC
GGGGGGTGCCGGACAGAGATGCAATCCAAGAAGAAGGAAGTCGATGACCG
GCACCTTCAGCTTCAAAATTTGATGTATGAAAAAGATCATTTGCAACGGA
CCATTCAAAGTTTGCGCGATTTTCCCATGGCGGAACTGACCAAGATCGAG
GAGGACGAGGGCGCACCCCTCCTTCCGGGGTTGACAGAGGGCGGCCAGGT
TCGTCTCCTGCCCGTGGAAGAGCACCGGCTCAGCTTGGAACGCCTGCAAG
AGGAGAAGGGGGCTCGCATTCAATTGCACGAAGAGCACGTGGCTGCCCAG
ACGAAACGTGCGGCTTTGTCGAGGGAGGTCGACGAGCTGCGCGCCATGCT
GGGTACCTCCCTGCCGCGCCAGATCGAGGAGCTCGACGCCCTCTGCACCG
GCATCCACGAGCGCATCCCAGGACTCTCGATCGCGGCACCCTTCGGCGGC
TTCCCGCCAGAGCAGGTGCAGGCCCTCCCCAGGCCGATGTACGTGTTGCT
GGGTAGGCTCCAGGCCTACCGGCAGGCCCAGGACCCGGCGGCCCGCCGGA
CGCGGGTCGAAGTCTTCCCCTGCGGCGACGAACAGGCTCCTCTCCCCCAA
TGTGTGGCTGCGTTGGGCACGGAAGCCGCGCGGCTAAAGGCCAAACGCGC
GCAATTGGGGCCCTCAGCCTCGTCGCCGAGCACGTCGGGGGAGGGGGAGG
GCGCGGAGGAGGAGGGCGGGTCTCTCATCCTTGTCGACCAGCTCGCGATA
CGTGTCGAGTTTCCGCCGCTGGGGCCCGACGGGGGTCTGCAGGAGAACGC
AGGCGACTGGGACGTCCTCATCTTCTTCTTCGCGCCCGAGGGGCGGGAGC
TGCTCGTGACAGCACCGGGACGCCACCCTCAGGCTTTGGTCAACCTGTTG
CCGGGGGACACGGGCGCGGACCCCTCGGCGGCCCCGACCTCGCACAGGGC
ACAAGGGACGCACGCGGGCTCCCGGCGCCTGAACCGCAAACGCGCGGTGG
ATACGGATAAGATCAGCGGGGCTTCGACCGCCACCTTCAGATCACCCCCC
TCCCCGCGCTCCTTTCTGTGGCTGCAGTGGCTGGGGGGCACGTCGCCCTT
TCCCCCCGAATTCGTGGACCTGGGTCTGGCCTACACGAGCTCCTGTATTC
TAAACAGGCTTCGCGTCCGCTTGCGCTCCCAGCGCAGTCTGGACGGCGTG
CTTGAGTCGCTGAGAAAGAGACCCGGCGACGTGCCCCGGGACGCGTCCTC
CCCCAGGCTCTTCCCGGGCGTGGAGGACGCGGGAGTCGGCAGGTGGCTGG
TGAGCTCCTTCACGGAGGTGACGCGGAGTGCGCTAAGCGGTGAAGAGCCG
GGGGAAGGAAGGGAGGAAGGAGGGGGCAAGGGGGAGGACCAGGGGGACAC
TGATCCCTTCGCCGAAGCGCCTTGCGGCGTGCTGGGCGGGGAGGAGGGGG
AAGAAGCGGGCGGGCCCGACGAGGTTCAGACGAGGAACGCAGATAGAGAG
GGTCCGGCCACTGTGAGATCGACGGAGGGGGGGGTGGCGTGGGAGCGGGC
GGGGGCGAGGTACTTCGACCTGGCGCTGAGGGCGCAGGCGGACACGAAAA
AAGGCGGTGGCGGGCGCAAGGAGAAGGCGCCGGAGGGACCAGAGTTGCAT
GTGGCTGTGGAGATAACGCCGGAGTATCCTATACGCCCCCCCCGTTTCCG
ACTCCTCTCTCCCTCCTCCCTCGCCGCCTCCACCCTCGCCGCTCACGCCC
CCTTTCGAGAGGCCTTCGCGCACATTCTCGTGGAGGTGAACGTCCACTAC
GAGGAGCTCCTCATGGGCGGCTCGGTGAGAGACTGGCTCTTCCCCCATCA
AGTGCACAAGCTGCTCTTCTGCTTGGAGGCGTCGGGCGCCGTTGGGGGCT
CGGGGAGTTCGGGGGGCGGATCGGAACGACTGAGATGGGGTAAAGACAGG
AGGAGGGGCTACTCCTTCGACACGCACTGCGCCTTGCTCATGCCTCGATG
ACAGTATGTGTCTCGGGGCTATCATAAAAATGAGCCAGTTCGACCGAGAT
GGCGTGGCCTTTGAGCTGAAAGAAAATCCCAAATTTCGTGTTCGCCACGA
CGGCCCGGCTGACCCCACTGACGGCGTGTTTATTTTCTTTCCCTCCGGAG
GCCTCGTATCTCCCCACTCTCACTACCCCGCGGTC

Coding sequence (CDS) from alignment at CM002455.1:732143..734727-

>rna295 ID=rna295|Name=rna295|organism=Nannochloropsis gaditana|type=CDS|length=2319bp|location=Sequence derived from alignment at CM002455.1:732143..734727- (Nannochloropsis gaditana)
ATGTCTGTTTCGTTCCAATCACACTCAATAAAGCAGGATACTGTCCCTGC
TCTTCGCCGTCATCTCACCGTCATCCGCCTGGAGGCCTGGGGCTCAGCTT
GTTCATCCGGCAGTGCCGCGACTCGAGGCATGACGGGGAAGACGACCCTG
CGGGCCGTCCACGAGGATTTGGTCGAGCTGGTGCACCGCTTGAAAGGTAC
CTTGGGGGACCAAAACAGTCCTGTCCCCGGAAAAGATGAAATGCAAGAGC
TTATCACAGAAGCGGCAGTAACACTCATCGAGTACAAGAGTATGGCTAGA
GAGAGCGCCATGGCTGTCGGGGGGTGCCGGACAGAGATGCAATCCAAGAA
GAAGGAAGTCGATGACCGGCACCTTCAGCTTCAAAATTTGATGTATGAAA
AAGATCATTTGCAACGGACCATTCAAAGTTTGCGCGATTTTCCCATGGCG
GAACTGACCAAGATCGAGGAGGACGAGGGCGCACCCCTCCTTCCGGGGTT
GACAGAGGGCGGCCAGGTTCGTCTCCTGCCCGTGGAAGAGCACCGGCTCA
GCTTGGAACGCCTGCAAGAGGAGAAGGGGGCTCGCATTCAATTGCACGAA
GAGCACGTGGCTGCCCAGACGAAACGTGCGGCTTTGTCGAGGGAGGTCGA
CGAGCTGCGCGCCATGCTGGGTACCTCCCTGCCGCGCCAGATCGAGGAGC
TCGACGCCCTCTGCACCGGCATCCACGAGCGCATCCCAGGACTCTCGATC
GCGGCACCCTTCGGCGGCTTCCCGCCAGAGCAGGTGCAGGCCCTCCCCAG
GCCGATGTACGTGTTGCTGGGTAGGCTCCAGGCCTACCGGCAGGCCCAGG
ACCCGGCGGCCCGCCGGACGCGGGTCGAAGTCTTCCCCTGCGGCGACGAA
CAGGCTCCTCTCCCCCAATGTGTGGCTGCGTTGGGCACGGAAGCCGCGCG
GCTAAAGGCCAAACGCGCGCAATTGGGGCCCTCAGCCTCGTCGCCGAGCA
CGTCGGGGGAGGGGGAGGGCGCGGAGGAGGAGGGCGGGTCTCTCATCCTT
GTCGACCAGCTCGCGATACGTGTCGAGTTTCCGCCGCTGGGGCCCGACGG
GGGTCTGCAGGAGAACGCAGGCGACTGGGACGTCCTCATCTTCTTCTTCG
CGCCCGAGGGGCGGGAGCTGCTCGTGACAGCACCGGGACGCCACCCTCAG
GCTTTGGTCAACCTGTTGCCGGGGGACACGGGCGCGGACCCCTCGGCGGC
CCCGACCTCGCACAGGGCACAAGGGACGCACGCGGGCTCCCGGCGCCTGA
ACCGCAAACGCGCGGTGGATACGGATAAGATCAGCGGGGCTTCGACCGCC
ACCTTCAGATCACCCCCCTCCCCGCGCTCCTTTCTGTGGCTGCAGTGGCT
GGGGGGCACGTCGCCCTTTCCCCCCGAATTCGTGGACCTGGGTCTGGCCT
ACACGAGCTCCTGTATTCTAAACAGGCTTCGCGTCCGCTTGCGCTCCCAG
CGCAGTCTGGACGGCGTGCTTGAGTCGCTGAGAAAGAGACCCGGCGACGT
GCCCCGGGACGCGTCCTCCCCCAGGCTCTTCCCGGGCGTGGAGGACGCGG
GAGTCGGCAGGTGGCTGGTGAGCTCCTTCACGGAGGTGACGCGGAGTGCG
CTAAGCGGTGAAGAGCCGGGGGAAGGAAGGGAGGAAGGAGGGGGCAAGGG
GGAGGACCAGGGGGACACTGATCCCTTCGCCGAAGCGCCTTGCGGCGTGC
TGGGCGGGGAGGAGGGGGAAGAAGCGGGCGGGCCCGACGAGGTTCAGACG
AGGAACGCAGATAGAGAGGGTCCGGCCACTGTGAGATCGACGGAGGGGGG
GGTGGCGTGGGAGCGGGCGGGGGCGAGGTACTTCGACCTGGCGCTGAGGG
CGCAGGCGGACACGAAAAAAGGCGGTGGCGGGCGCAAGGAGAAGGCGCCG
GAGGGACCAGAGTTGCATGTGGCTGTGGAGATAACGCCGGAGTATCCTAT
ACGCCCCCCCCGTTTCCGACTCCTCTCTCCCTCCTCCCTCGCCGCCTCCA
CCCTCGCCGCTCACGCCCCCTTTCGAGAGGCCTTCGCGCACATTCTCGTG
GAGGTGAACGTCCACTACGAGGAGCTCCTCATGGGCGGCTCGGTGAGAGA
CTGGCTCTTCCCCCATCAAGTGCACAAGCTGCTCTTCTGCTTGGAGGCGT
CGGGCGCCGTTGGGGGCTCGGGGAGTTCGGGGGGCGGATCGGAACGACTG
AGATGGGGTAAAGACAGGAGGAGGGGCTACTCCTTCGACACGCACTGCGC
CTTGCTCATGCCTCGATGA

Synonyms

Publications