rna2948, rna2948 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2948
Unique Name	rna2948
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	1353
Alignment location	CM002460.1:329960..332255 -

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Properties


Property Name	Value
Product	Protein of unknown function DUF3228
Orig transcript id	gnl\|cribi\|Naga_100034g32.6308.mrna
Orig protein id	gnl\|cribi\|Naga_100034g32.6308
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:329960..332255 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g32	gene2828	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2948	rna2948-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27735.1	cds2940	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:329960..332255-
coding sequence from alignment at CM002460.1:329960..332255-

mRNA sequence

>rna2948 ID=rna2948|Name=rna2948|organism=Nannochloropsis gaditana|type=mRNA|length=1353bp
ATGTCCCATTCGCACGCACAGAGATGCTCTCGGGGACCCTCAACTTGCGG
GGCGTTTTTCCTTCCGCCGGGTAGAAGCCCGCGCTACTCGCGACTTAATT
CGGCCAAACACATTGGAGAGCAGCTCGGAGACCCCTCTCGTGCGCCCACT
TGGTACCCTAACCTCCTCCTGTCGAAGATGAAGCGGCTTTGTCAATGGTC
TGCCATCAAGCTGTCCAAGTCGACTCCCGAAAATCTCATAGAGGAGAACC
TGCATGTGCCAACGCATACAGAACTGACTTTAGCCGCAAGTGATCCGGGA
TTGCCCCCCCTTCCTCCTGGGTTGCAGGGTCGAGCCCTGGCGGCTGTCCA
CGAGGGCGTTTTACGGCTGGGCATGAGGATTGTGGCAGAGCCACTGTCGC
CCGACCAATGGAACCTGCTTATTCGGCTTCTGTCTGAGTCAGAGGGGGGG
AAAGTTCAGCGCTACTATCACGATAAAGATCGCCGACTGGCTCTAGGCAG
CATTCTACTTCAACGGGCAGCCACGAGCTGGGTGCTCGGCAAGCGGTTCA
GTGACATAAACATCGAACGCACTAGAACTTACAATAAACCATATGTTAAC
GCAAAGGACTCCCGACTCCCCCAGTGGAACTATAATGTATCGCATCATGG
AGATTGGGTGGTGCTGGCCAGCGAGCCGTTTCACGCCGTCGGGACCGACC
TCGTGGACGTCGGGGACAGGCCTTTCGAGGCGATGACTGCCTTAGAGTAC
CTAGAGCATTTTAAGCGGCACCTAACTCCCGCGGAGTGGCAGGGTTTGAG
GAGCGTGGGACGGGATGGCGAGGCAAGCCAGTACCGTGCCTTCTACCGCG
TCTGGGCCATGAAAGAGGCCTACGTAAAAGCCATTGGAGTGGGTTTGTCT
TTTCCTGTCCGTCGTTTGGAGTGCAGCATAGTAGACGTTGGAGCTGATTT
GACAGGAATGGAAACGGACGGCGTGGAGGAGGAGCTCATGATGGACGGGT
ACATAATGACTGACTGGAGGCTCCGCCTAGTAAGCCTGCCCCCGTCGTAC
CTGTGGTGCACAGCTGTTGGACCGAAGCCCACTGCTCATCATCTCCCATC
ACCTGGTAACGTCCGCCATTGCGCTCCATGCTCTGCTTGTCTGTATGCGC
CTCCCTCGCCCTCAAAAGGGATTTGCGGTACAAGTACAGCCATAGCGACA
GCGACGCCTGCGTCGTCCGCCCCGCATGATATACTACGAAAGAAGGTCTG
CGTCCTAACAATTCGAGACTGTCTGCCACTCGGCGTCCAAGCTCAATGGG
ATGCCTTAAGTCTTGTTGGGCCAATCGCTAATCGAAGTAGTAACACCGGA
TAA

protein sequence of rna2948

>rna2948-protein ID=rna2948-protein|Name=rna2948|organism=Nannochloropsis gaditana|type=polypeptide|length=244bp
MKICSSVLAISVIYAGAFPSAAPVFISWIVQPRPLASKRHYHCRGTMTAK
HDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPF
CKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEE
VALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDY
ELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR

mRNA from alignment at CM002460.1:329960..332255-

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2948 ID=rna2948|Name=rna2948|organism=Nannochloropsis gaditana|type=mRNA|length=2296bp|location=Sequence derived from alignment at CM002460.1:329960..332255- (Nannochloropsis gaditana)
CAGTTGGCGCTGTCAATCAATACGTTCCCATCTCATAACTTTTGACCGGC
GCGCTATAAAATGGACATGGCGGTGACATGGCAGAAACCAAGAAAACCCA
TATTCATGACCACAATCGCTACAAGAAAACGCATGTTCATGACCACAATC
GCTAGGAAGCTGCGATGCTGCATAGGCGAGCTCAGAACGAGTTGACCATT
CGAGGGCATGGATAGCTTGCTCCGCGCAAGCGAAAGACCCTTGGCATGTT
CTACACCATTCCTCGCCTGTAAAGTATCCACTGCATTTTTCTCCAGCCAG
CACATTTCCGCAATTATGGCGATTGTTGTCCCTCAGTCACACGTCCCTTA
TGATCTGTATTGCAGAATTGTATAATGTCTTCACTCATAAATGAAAACAG
CGGCAACAATAAACGCAAAGCAACTGTTGAATGAAAATTTGTTCAAGTGT
TTTGGCAATCTCAGGTACGCGGGGTTTTCGTGTGCCTTCACGTATCACTG
TTCAGCGGATGAATTTATTCTTGACCTTCTCAGTGAATGGTATCTTGACA
ACGCCAAATCTATCAATTGATCCAGTGATATACGCAGGTGCTTTTCCATC
CGCGGCGCCCGTTTTCATAAGTTGGATAGTCCAGCCTCGGCCACTGGCAA
GTAAGCGCCACTATCATTGTCGGGTAAGTCCATCGATCATCAACTCCTCG
CTTTCCATCGCTGGAAATTCCAGTCATGTTGTCGGGATACATACTTGCAC
AGGGTACAATGACAGCGAAGCATGATATTGTGGTCGATGACTTTTGTTTG
CGGCAGTTTTCTCAGGAAGAAAACTACTCGAAAATCAGGTTGCCTCCCTC
TGAATTCGAAGAACAAGTTAATGCATATTATCAGGCTAATCCTACGCTTG
TGGACGGATACGCACCCTTTTGTAAGCATATCTTTATGCCCAACTTTGCT
GGATTGAGATCCGGAACATCGCCCATTACTTCTGAAAATGTTCACTTGTT
GCGCTCTGTTTACGAGGCACGGAAAGAGAAGGAATTGCCAGTCCTGGTAC
GAGTGGAGGGTTAGTGGCACTTTTAGCGATATATAAGATTTTAGCCTCGT
GATATATGGAAAGGAATTCCTTTCGATTTCCGAAGTAACGTGAAACTAAG
CTTTCTATCCTTCGCATGACACATGCTACGCATGAGTCTAACGGTGAGAT
TCTCTACTTTCTTCACCTCAGATCCGCTACTTCCCCAAGGAAGAGGTTGC
TTTAAAACCAGCAGCCTTCCTTGACATTATCCTCTACAGTCGAGAGCAAA
TTCAAAAGGAGAATGAAGATATGGCCAATCTAGTCAAGGAGCAAAATCAC
TCTCCTTGGGGCATCGTATCCGTGAAACCTCAGGATGTGGATTACGAGCT
ACCCATGCAACCTATCACAATGCTCCGGAACGCCCTGGGACGGGGTTACG
GGGGCTCCGGCGTGGCGTTGGACCAGACCCAGTACCTGGCGTCAGTTGAT
TTTTGGTCTTGCCACGCCATTATTCGGTAGAGAACTTTTCACCCACCGCA
AGTTGAGGTTCTTCGTACAATTGACCATCAACATTTGTCAGCATACCCAA
AGAAGAAATGTGACCAAGGTTTTGCACACGATTACAAGAGACTCGCCATG
TCCATCTTATCCGGTGTTACTACTTCGATTAGCGATTGGCCCAACAAGAC
TTAAGGCATCCCATTGAGCTTGGACGCCGAGTGGCAGACAGTCTCGAATT
GTTAGGACGCAGACCTTCTTTCGTAGTATATCATGCGGGGCGGACGACGC
AGGCGTCGCTGTCGCTATGGCTGTACTTGTACCGCAAATCCCTTTTGAGG
GCGAGGGAGGCGCATACAGACAAGCAGAGCATGGAGCGCAATGGCGGACG
TTACCAGGTGATGGGAGATGATGAGCAGTGGGCTTCGGTCCAACAGCTGT
GCACCACAGGTACGACGGGGGCAGGCTTACTAGGCGGAGCCTCCAGTCAG
TCATTATGTACCCGTCCATCATGAGCTCCTCCTCCACGCCGTCCGTTTCC
ATTCCTGTCAAATCAGCTCCAACGTCTACTATGCTGCACTCCAAACGACG
GACAGGAAAAGACAAACCCACTCCAATGGCTTTTACGTAGGCCTCTTTCA
TGGCCCAGACGCGGTAGAAGGCACGGTACTGGCTTGCCTCGCCATCCCGT
CCCACGCTCCTCAAACCCTGCCACTCCGCGGGAGTTAGGTGCCGCTTAAA
ATGCTCTAGGTACTCTAAGGCAGTCATCGCCTCGAAAGGCCTGTCC

Coding sequence (CDS) from alignment at CM002460.1:329960..332255-

>rna2948 ID=rna2948|Name=rna2948|organism=Nannochloropsis gaditana|type=CDS|length=2940bp|location=Sequence derived from alignment at CM002460.1:329960..332255- (Nannochloropsis gaditana)
ATCCGCTACTTCCCCAAGGAAGAGGTTGCTTTAAAACCAGCAGCCTTCCT
TGACATTATCCTCTACAGTCGAGAGCAAATTCAAAAGGAGAATGAAGATA
TGGCCAATCTAGTCAAGGAGCAAAATCACTCTCCTTGGGGCATCGTATCC
GTGAAACCTCAGGATGTGGATTACGAGCTACCCATGCAACCTATCACAAT
GCTCCGGAACGCCCTGGGACGGGGTTACGGGGGCTCCGGCGTGGCGTTGG
ACCAGACCCAGTACCTGGCGTCAGTTGATTTTTGGTCTTGCCACGCCATT
ATTCGGTAGGGTACAATGACAGCGAAGCATGATATTGTGGTCGATGACTT
TTGTTTGCGGCAGTTTTCTCAGGAAGAAAACTACTCGAAAATCAGGTTGC
CTCCCTCTGAATTCGAAGAACAAGTTAATGCATATTATCAGGCTAATCCT
ACGCTTGTGGACGGATACGCACCCTTTTGTAAGCATATCTTTATGCCCAA
CTTTGCTGGATTGAGATCCGGAACATCGCCCATTACTTCTGAAAATGTTC
ACTTGTTGCGCTCTGTTTACGAGGCACGGAAAGAGAAGGAATTGCCAGTC
CTGTGATATACGCAGGTGCTTTTCCATCCGCGGCGCCCGTTTTCATAAGT
TGGATAGTCCAGCCTCGGCCACTGGCAAGTAAGCGCCACTATCATTGTCG
GATGAAAATTTGTTCAAGTGTTTTGGCAATCTCAGATCCGCTACTTCCCC
AAGGAAGAGGTTGCTTTAAAACCAGCAGCCTTCCTTGACATTATCCTCTA
CAGTCGAGAGCAAATTCAAAAGGAGAATGAAGATATGGCCAATCTAGTCA
AGGAGCAAAATCACTCTCCTTGGGGCATCGTATCCGTGAAACCTCAGGAT
GTGGATTACGAGCTACCCATGCAACCTATCACAATGCTCCGGAACGCCCT
GGGACGGGGTTACGGGGGCTCCGGCGTGGCGTTGGACCAGACCCAGTACC
TGGCGTCAGTTGATTTTTGGTCTTGCCACGCCATTATTCGGTAGGGTACA
ATGACAGCGAAGCATGATATTGTGGTCGATGACTTTTGTTTGCGGCAGTT
TTCTCAGGAAGAAAACTACTCGAAAATCAGGTTGCCTCCCTCTGAATTCG
AAGAACAAGTTAATGCATATTATCAGGCTAATCCTACGCTTGTGGACGGA
TACGCACCCTTTTGTAAGCATATCTTTATGCCCAACTTTGCTGGATTGAG
ATCCGGAACATCGCCCATTACTTCTGAAAATGTTCACTTGTTGCGCTCTG
TTTACGAGGCACGGAAAGAGAAGGAATTGCCAGTCCTGTGATATACGCAG
GTGCTTTTCCATCCGCGGCGCCCGTTTTCATAAGTTGGATAGTCCAGCCT
CGGCCACTGGCAAGTAAGCGCCACTATCATTGTCGGATGAAAATTTGTTC
AAGTGTTTTGGCAATCTCAGATCCGCTACTTCCCCAAGGAAGAGGTTGCT
TTAAAACCAGCAGCCTTCCTTGACATTATCCTCTACAGTCGAGAGCAAAT
TCAAAAGGAGAATGAAGATATGGCCAATCTAGTCAAGGAGCAAAATCACT
CTCCTTGGGGCATCGTATCCGTGAAACCTCAGGATGTGGATTACGAGCTA
CCCATGCAACCTATCACAATGCTCCGGAACGCCCTGGGACGGGGTTACGG
GGGCTCCGGCGTGGCGTTGGACCAGACCCAGTACCTGGCGTCAGTTGATT
TTTGGTCTTGCCACGCCATTATTCGGTAGGGTACAATGACAGCGAAGCAT
GATATTGTGGTCGATGACTTTTGTTTGCGGCAGTTTTCTCAGGAAGAAAA
CTACTCGAAAATCAGGTTGCCTCCCTCTGAATTCGAAGAACAAGTTAATG
CATATTATCAGGCTAATCCTACGCTTGTGGACGGATACGCACCCTTTTGT
AAGCATATCTTTATGCCCAACTTTGCTGGATTGAGATCCGGAACATCGCC
CATTACTTCTGAAAATGTTCACTTGTTGCGCTCTGTTTACGAGGCACGGA
AAGAGAAGGAATTGCCAGTCCTGTGATATACGCAGGTGCTTTTCCATCCG
CGGCGCCCGTTTTCATAAGTTGGATAGTCCAGCCTCGGCCACTGGCAAGT
AAGCGCCACTATCATTGTCGGATGAAAATTTGTTCAAGTGTTTTGGCAAT
CTCAGATCCGCTACTTCCCCAAGGAAGAGGTTGCTTTAAAACCAGCAGCC
TTCCTTGACATTATCCTCTACAGTCGAGAGCAAATTCAAAAGGAGAATGA
AGATATGGCCAATCTAGTCAAGGAGCAAAATCACTCTCCTTGGGGCATCG
TATCCGTGAAACCTCAGGATGTGGATTACGAGCTACCCATGCAACCTATC
ACAATGCTCCGGAACGCCCTGGGACGGGGTTACGGGGGCTCCGGCGTGGC
GTTGGACCAGACCCAGTACCTGGCGTCAGTTGATTTTTGGTCTTGCCACG
CCATTATTCGGTAGGGTACAATGACAGCGAAGCATGATATTGTGGTCGAT
GACTTTTGTTTGCGGCAGTTTTCTCAGGAAGAAAACTACTCGAAAATCAG
GTTGCCTCCCTCTGAATTCGAAGAACAAGTTAATGCATATTATCAGGCTA
ATCCTACGCTTGTGGACGGATACGCACCCTTTTGTAAGCATATCTTTATG
CCCAACTTTGCTGGATTGAGATCCGGAACATCGCCCATTACTTCTGAAAA
TGTTCACTTGTTGCGCTCTGTTTACGAGGCACGGAAAGAGAAGGAATTGC
CAGTCCTGTGATATACGCAGGTGCTTTTCCATCCGCGGCGCCCGTTTTCA
TAAGTTGGATAGTCCAGCCTCGGCCACTGGCAAGTAAGCGCCACTATCAT
TGTCGGATGAAAATTTGTTCAAGTGTTTTGGCAATCTCAG

Synonyms

Publications