EWM27735.1, cds2940 (CDS) Nannochloropsis gaditana

Overview
NameEWM27735.1
Unique Namecds2940
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:331792..331825 -
Alignment locationCM002460.1:331583..331680 -
Alignment locationCM002460.1:331210..331503 -
Alignment locationCM002460.1:330726..331034 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27735.1
ProductProtein of unknown function DUF3228
Orig transcript idgnl|cribi|Naga_100034g32.6308.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:331792..331825 -
CM002460.1supercontigCM002460.1:331583..331680 -
CM002460.1supercontigCM002460.1:331210..331503 -
CM002460.1supercontigCM002460.1:330726..331034 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Biological Process
TermDefinition
GO:0006810transport
Vocabulary: Cellular Component
TermDefinition
GO:0005575cellular_component
Vocabulary: INTERPRO
TermDefinition
IPR021610DUF3228
Homology
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|585110008|gb|EWM27735.1| (Protein of unknown function DUF3228 [Nannochloropsis gaditana])

HSP 1 Score: 511.916 bits (1317), Expect = 0.000e+0
Identity = 244/244 (100.00%), Postives = 244/244 (100.00%), Query Frame = 0
Query:    1 MKICSSVLAISVIYAGAFPSAAPVFISWIVQPRPLASKRHYHCRGTMTAKHDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            MKICSSVLAISVIYAGAFPSAAPVFISWIVQPRPLASKRHYHCRGTMTAKHDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR
Sbjct:    1 MKICSSVLAISVIYAGAFPSAAPVFISWIVQPRPLASKRHYHCRGTMTAKHDIVVDDFCLRQFSQEENYSKIRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|929770020|ref|XP_014159943.1| (hypothetical protein SARC_01800 [Sphaeroforma arctica JP610] >gi|906957749|gb|KNC86041.1| hypothetical protein SARC_01800 [Sphaeroforma arctica JP610])

HSP 1 Score: 226.098 bits (575), Expect = 3.248e-71
Identity = 113/200 (56.50%), Postives = 145/200 (72.50%), Query Frame = 0
Query:   48 TAKHDIVVDDFCLRQFSQEENYS--KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            ++ H  V+DDF +RQF  + NY+  +I+  PSEFE +VN +Y +   TL DGYAPFCKH+F+PNF G++ G + IT++N  LL++ YEAR EKELPVL+R+F  E+V    A  LDIILYS+EQI KENE M N  K  + +PWGI+SVK Q  DYELPMQPITMLRNALGR  GGSGV L++ +Y  SV+FW  HA  +
Sbjct:   23 SSAHTFVMDDFAMRQF-DDPNYTGTRIKFDPSEFEAKVNEFYTSGEATLKDGYAPFCKHLFIPNFCGVKCGYARITADNRSLLQTEYEARSEKELPVLVRFFKTEDVTAPDATHLDIILYSKEQIIKENEAMGNPGKIMS-APWGIISVKGQTKDYELPMQPITMLRNALGRDEGGSGVKLEREKYSESVNFWKEHASFK 220          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|298707970|emb|CBJ30341.1| (flagellar associated protein [Ectocarpus siliculosus])

HSP 1 Score: 221.861 bits (564), Expect = 4.240e-69
Identity = 119/246 (48.37%), Postives = 162/246 (65.85%), Query Frame = 0
Query:    9 AISVIYAGAFPSAAPVFISWIVQPRPL-----ASKRHYHCRGT-MTA--KHDIVVDDFCLRQFSQEE-NYSKIRLPPSEFEEQVNAYYQA-NPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            A S+++A    +A    I    +P PL     AS+R Y    T M+A   +++V+D F +RQF+ E    +K+   P EFE++VN  ++A    L +GYAPFCKH+F+PNFAG+++ T  IT EN  LL + YEAR  KELP+L R+F    V    A FLDIILYSREQI+KE   M    KE + +PWGI+SVK QDVD+E+PMQPITM+RNALG+  GGSGV L++ +Y+ SV+FW  HA ++
Sbjct:    7 ACSLLFAARASTACAFRIQAAARPCPLGFPAAASRRGYKSTTTAMSAPGGNELVMDAFAMRQFTDESYTGTKVAYDPQEFEDKVNEIFRAAGGKLEEGYAPFCKHVFVPNFAGVKTSTVKITPENEKLLVAGYEARTAKELPILSRWFESGTVETPEAKFLDIILYSREQIRKETAAMGK-EKEDSEAPWGIISVKSQDVDHEIPMQPITMMRNALGKEEGGSGVPLEREKYMQSVEFWRDHAPVK 251          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|635370780|emb|CCI41043.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 225.713 bits (574), Expect = 3.738e-68
Identity = 106/199 (53.27%), Postives = 138/199 (69.35%), Query Frame = 0
Query:   49 AKHDIVVDDFCLRQFSQEE-NYSKIRLPPSEFEEQVNA-YYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKE-QNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
             KHD+V+D FC RQF   + N ++I     EFE+++N  Y Q N  L+DGYAPFCKH+F+ NF   R+ T  IT  N HLL S YEAR   ELPVL+R+FP   V    A +LDIILY+R+QIQ EN+     + + QN +PWGI+S+K Q+VDYELPM PITM+RNALG+  GGSGV L++ QY+ SV+FW  HA ++
Sbjct:  247 VKHDLVLDPFCFRQFDDPKYNGTRINFDKKEFEKRINEIYVQHNKKLIDGYAPFCKHLFVENFTDTRTNTVKITQANAHLLMSDYEARAAHELPVLVRWFPSHSVTPSMAKYLDIILYNRDQIQNENKATGTAMDQTQNEAPWGIISIKAQNVDYELPMTPITMMRNALGKEEGGSGVPLNRNQYIKSVEFWKNHANVK 445          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|325187396|emb|CCA21935.1| (conserved hypothetical protein [Albugo laibachii Nc14] >gi|325190309|emb|CCA24785.1| conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 220.32 bits (560), Expect = 2.911e-66
Identity = 104/199 (52.26%), Postives = 137/199 (68.84%), Query Frame = 0
Query:   49 AKHDIVVDDFCLRQFSQEE-NYSKIRLPPSEFEEQVNA-YYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKE-QNHSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
              HD+V+D FC RQF   + N ++I    +EFE+++N  Y + N  LVDGYAPFCKH+F+ NF   R+    IT  N HLL S YEAR   ELPVL+R+FP   V    A +LDIILY+R+QIQ EN+     + + Q+ +PWGI+S+K Q+VDYELPM PITM+RNALG+  GGSGV LD+ +YL SV+FW  HA ++
Sbjct:  226 VNHDLVLDPFCFRQFDDAKYNGTRINYDKNEFEKRINEIYVKQNKNLVDGYAPFCKHLFVENFTDTRTNMVKITQANAHLLMSEYEARAAYELPVLVRWFPSHSVTPSMAKYLDIILYNRDQIQNENKATGTAMDQTQDEAPWGIISIKAQNVDYELPMTPITMMRNALGKEEGGSGVPLDRNKYLKSVEFWKNHANVK 424          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|118356530|ref|XP_001011521.1| (flagellar associated protein [Tetrahymena thermophila SB210] >gi|89293288|gb|EAR91276.1| flagellar associated protein [Tetrahymena thermophila SB210])

HSP 1 Score: 211.075 bits (536), Expect = 1.521e-65
Identity = 108/194 (55.67%), Postives = 137/194 (70.62%), Query Frame = 0
Query:   53 IVVDDFCLRQFSQEENYSK-IRLPPSEFEEQVNAYYQANPTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQN-HSPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            IV+D FCL+QF      S  +     E +E +N  Y  +  LVDGYAPFCKH+F+PNF   +  TS IT EN HLL+++YEAR EKELPVL RYFP   V  + A+ LDIILYS+EQIQ EN  M N+   ++    WG+VSVKPQ++DYE+PM PITM+RNALG+  GGSGV LD+ +YL SV+FWS +AII+
Sbjct:    6 IVIDPFCLKQFDPNVKTSTYVCSTVEEMQEHLNKIYDPS-KLVDGYAPFCKHLFIPNFTQTKLSTSKITPENEHLLKTIYEARTEKELPVLRRYFPVGSVPQEVASHLDIILYSKEQIQLENAAMGNVDPNKDIDYHWGVVSVKPQNLDYEIPMDPITMMRNALGKEEGGSGVPLDRKKYLESVEFWSKNAIIK 198          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|566030513|gb|ETI53424.1| (hypothetical protein F443_03620 [Phytophthora parasitica P1569] >gi|567968115|gb|ETK93265.1| hypothetical protein L915_03514 [Phytophthora parasitica] >gi|567996565|gb|ETL46672.1| hypothetical protein L916_03465 [Phytophthora parasitica] >gi|568025815|gb|ETL99817.1| hypothetical protein L917_03385 [Phytophthora parasitica] >gi|568056263|gb|ETM52975.1| hypothetical protein L914_03489 [Phytophthora parasitica] >gi|570334196|gb|ETO82144.1| hypothetical protein F444_03689 [Phytophthora parasitica P1976] >gi|570958233|gb|ETP23212.1| hypothetical protein F441_03615 [Phytophthora parasitica CJ01A1] >gi|570994004|gb|ETP51218.1| hypothetical protein F442_03600 [Phytophthora parasitica P10297] >gi|970660780|gb|KUF98303.1| Uroporphyrinogen-III synthase [Phytophthora nicotianae])

HSP 1 Score: 212.231 bits (539), Expect = 2.333e-65
Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 0
Query:   50 KHDIVVDDFCLRQFSQEENYS--KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            + DIV+D F  RQF  ++ YS  +I     EF ++VN  Y+AN   LVDGYAPFCKH+F+ NF G R     IT  N H+L S YEAR E ELPVL R+FP   V  K A +LDIILYSREQI KENE   ++  + +H  SPWGIVS+K QDVD+ELPM+PITM+RNA+G+  GGSGV LD+ +Y+ +V++W  HA+I+
Sbjct:   48 RGDIVLDGFAKRQFD-DKTYSGTQIDFDKKEFVKKVNEIYEANNKQLVDGYAPFCKHLFIKNFTGARLNMVAITQANAHMLMSDYEARTEYELPVLGRWFPSHSVTPKVAEYLDIILYSREQIIKENE-AVDVPADPDHGDSPWGIVSIKAQDVDHELPMKPITMMRNAVGKEQGGSGVPLDRDEYMKAVEYWRNHAVIK 245          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|570994005|gb|ETP51219.1| (hypothetical protein, variant [Phytophthora parasitica P10297])

HSP 1 Score: 211.075 bits (536), Expect = 2.818e-65
Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 0
Query:   50 KHDIVVDDFCLRQFSQEENYS--KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            + DIV+D F  RQF  ++ YS  +I     EF ++VN  Y+AN   LVDGYAPFCKH+F+ NF G R     IT  N H+L S YEAR E ELPVL R+FP   V  K A +LDIILYSREQI KENE   ++  + +H  SPWGIVS+K QDVD+ELPM+PITM+RNA+G+  GGSGV LD+ +Y+ +V++W  HA+I+
Sbjct:   25 RGDIVLDGFAKRQFD-DKTYSGTQIDFDKKEFVKKVNEIYEANNKQLVDGYAPFCKHLFIKNFTGARLNMVAITQANAHMLMSDYEARTEYELPVLGRWFPSHSVTPKVAEYLDIILYSREQIIKENE-AVDVPADPDHGDSPWGIVSIKAQDVDHELPMKPITMMRNAVGKEQGGSGVPLDRDEYMKAVEYWRNHAVIK 222          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|675183881|ref|XP_008900825.1| (hypothetical protein PPTG_08476 [Phytophthora parasitica INRA-310] >gi|568099032|gb|ETN13750.1| hypothetical protein PPTG_08476 [Phytophthora parasitica INRA-310])

HSP 1 Score: 212.231 bits (539), Expect = 2.837e-65
Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 0
Query:   50 KHDIVVDDFCLRQFSQEENYS--KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            + DIV+D F  RQF  ++ YS  +I     EF ++VN  Y+AN   LVDGYAPFCKH+F+ NF G R     IT  N H+L S YEAR E ELPVL R+FP   V  K A +LDIILYSREQI KENE   ++  + +H  SPWGIVS+K QDVD+ELPM+PITM+RNA+G+  GGSGV LD+ +Y+ +V++W  HA+I+
Sbjct:   48 RGDIVLDGFAKRQFD-DKTYSGTQIDFDKKEFVKKVNEIYEANNKQLVDGYAPFCKHLFIKNFTGARLNMVAITQANAHMLMSDYEARTEYELPVLGRWFPSHSVTPKVAEYLDIILYSREQIIKENE-AVDVPADPDHGDSPWGIVSIKAQDVDHELPMKPITMMRNAVGKEQGGSGVPLDRDEYMKAVEYWRNHAVIK 245          
BLAST of EWM27735.1 vs. NCBI_GenBank
Match: gi|970655246|gb|KUF93435.1| (hypothetical protein AM587_10007889 [Phytophthora nicotianae])

HSP 1 Score: 211.846 bits (538), Expect = 3.566e-65
Identity = 109/200 (54.50%), Postives = 140/200 (70.00%), Query Frame = 0
Query:   50 KHDIVVDDFCLRQFSQEENYS--KIRLPPSEFEEQVNAYYQAN-PTLVDGYAPFCKHIFMPNFAGLRSGTSPITSENVHLLRSVYEARKEKELPVLIRYFPKEEVALKPAAFLDIILYSREQIQKENEDMANLVKEQNH--SPWGIVSVKPQDVDYELPMQPITMLRNALGRGYGGSGVALDQTQYLASVDFWSCHAIIR 244
            + DIV+D F  RQF  ++ YS  +I     EF ++VN  Y+AN   LVDGYAPFCKH+F+ NF G R     IT  N H+L S YEAR E ELPVL R+FP   V  K A +LDIILYSREQI KENE   ++  + +H  SPWGIVS+K QDVD+ELPM+PITM+RNA+G+  GGSGV LD+ +Y+ +V++W  HA+I+
Sbjct:   48 RGDIVLDGFAKRQFD-DKTYSGTQIDFDKKEFVKKVNEIYEANNKQLVDGYAPFCKHLFIKNFTGARLNMVAITQANAHMLMSDYEARTEYELPVLGRWFPSHSVTPKVAEYLDIILYSREQIIKENE-AVDVPADPDHGDSPWGIVSIKAQDVDHELPMKPITMMRNAVGKEQGGSGVPLDRDEYMKAVEYWRNHAVIK 245          
The following BLAST results are available for this feature:
BLAST of EWM27735.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110008|gb|EWM27735.1|0.000e+0100.00Protein of unknown function DUF3228 [Nannochlorops... [more]
gi|929770020|ref|XP_014159943.1|3.248e-7156.50hypothetical protein SARC_01800 [Sphaeroforma arct... [more]
gi|298707970|emb|CBJ30341.1|4.240e-6948.37flagellar associated protein [Ectocarpus siliculos... [more]
gi|635370780|emb|CCI41043.1|3.738e-6853.27unnamed protein product [Albugo candida][more]
gi|325187396|emb|CCA21935.1|2.911e-6652.26conserved hypothetical protein [Albugo laibachii N... [more]
gi|118356530|ref|XP_001011521.1|1.521e-6555.67flagellar associated protein [Tetrahymena thermoph... [more]
gi|566030513|gb|ETI53424.1|2.333e-6554.50hypothetical protein F443_03620 [Phytophthora para... [more]
gi|570994005|gb|ETP51219.1|2.818e-6554.50hypothetical protein, variant [Phytophthora parasi... [more]
gi|675183881|ref|XP_008900825.1|2.837e-6554.50hypothetical protein PPTG_08476 [Phytophthora para... [more]
gi|970655246|gb|KUF93435.1|3.566e-6554.50hypothetical protein AM587_10007889 [Phytophthora ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2948rna2948Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications