rna2947, rna2947 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2947
Unique Name	rna2947
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2090
Alignment location	CM002460.1:329165..330599 +

Link to JBrowse

Properties


Property Name	Value
Product	l-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl
Orig transcript id	gnl\|cribi\|Naga_100034g33.6304.mrna
Orig protein id	gnl\|cribi\|Naga_100034g33.6304
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:329165..330599 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g33	gene2827	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2947	rna2947-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27731.1	cds2939	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:329165..330599+
coding sequence from alignment at CM002460.1:329165..330599+

mRNA sequence

>rna2947 ID=rna2947|Name=rna2947|organism=Nannochloropsis gaditana|type=mRNA|length=2090bp
TTAAGTCGCGAGTAGCGCGGGCTTCTACCCGGCGGAAGGAAAAACGCCCC
GCAAGTTGAGGGTCCCCGAGAGCATCTCTGTGCGTGCGAATGGGACATAT
TATCGGGTGAATCGGCGTAGTCAATCCCGGTAACCAGGCTTTTAGGCTCT
AGCGTACAATAAATCGTGAGACGGCCGCAGTCAGTCCAACGAAAGCTTTT
CTATCGGGTCACCGGCGATATGGGCATGGCGGCGTCCGAGGCGAGTGCGC
GGATGGTGAGGGCAAGCGAGCGGCAAGTGAGCAGTCAAGCTGCGGGCCCC
AGGCTTCCCCAGGACCCTCACGAAACTGTGAAGGTCGTGACAATTGTGAT
ATGGAGGCACAAAGCAGCAGTATTCTCGTATTGTGGGCGGTGCTCGATCA
ATTCGCTGGCACATGACAAACATTTTCTCCCTATTTCTGAAGTGCACAAC
GTCTTTCTGTTGTATCCTCTTAAAACACACTATGACCATCGCAGTGACAA
GCGACAGAGTGCTATCCTTTGCAGGGATGGTTTTGGGGGTTGCTTTCGGC
GCATTCCTGCTTCTTTTTGTCCAATGCGAGGGATTTGTCCCTGCAGGACC
TCAACGCCTTCTGACTCCTCAGTATCCCACTCCGGCCTCAATGGACGCCA
CTGAGCCGACGTTTGGCAGGACTCTCATTTCGCTGAAATCTGATCAAGAT
CTAAAGGAGACCCAAAATGCAGCTGGCGTCGGTATTTCCGTCATGGGACG
TTCTTTGGCTGTTACTGGCTTGTTCCTGTCTTCATTTTGGGGAGGAGGAC
TGGAGCAAGTGATGGCCGCTCCCATGGCAACTAGTAGGCAACAGAGCACG
CAGCGACAGGAAAGACCTTTTGGCAAGACGAAAAAAAATGCACTGAAAGA
AGAAAATAAGGAGCTAACTGACGTAATTGCAAAGGTGATTTGTGCAAGAT
TCATCGAAGGGGTTTGTATTATTACTCATGTCTCAAGCTTGCGTTTCCCA
CAATCAGGGCACTGTGCGGCTGCCCGAGATCGAGGGCTATCCGTTAGGAC
CCGAACGTCCCGGGGTTATCAATTATGCGCTTGAGAATGACAATGCGGCG
CTTCTTATCACTTGTTACGGTAGAGAAGGTGGACCAGTTGCTGCAAAAAA
GTGAGCTTACTGACTGACGGATACATAGATAGATGGATGGGTTTTGGGGT
GACGATTGCTTACAAACTACTCACTTCTTTCGTACTTCATCCGCTGCAAA
CCAGAATTCAATTGCGAGGGCTGCAGTTTCCCTACAATTTCGAGTTGACT
TTCAATAATCTGCTCTTTCCTTTGACCAAGGAAACTTGGGAGAAAGACAA
TCGTGCTTTTGACGACCTGGGTATTTCCGCGCTTTTGGATCTTGATGGAA
AATTTTCCACCGCCAATGAAAATGATCTTTTGGGCTTTGGAATCTCGAAA
CCTGTCGCAATCGCTGGCAGCCAGATCCGACGGGACGCTCTCATACAGGT
CACGCCTCGAACTGGTGTCAAGCAGTACACCGACGAGGAGCAGCGCCTCC
TCTCCACCATTGACTTAGAGTTGGCTCGTCAAGCTCAAGGGGCAAGTCTG
GCGCAATTAGCTGAGGAAAATGGCGGTGGAAACATCGAGGTTTTGACGAA
CCAGCGTCAAACAGAGCCTGCCGATCCTGCTGTCCAACTTGTTGAGTAGG
AAGACGTGCGAAGGCGCCAATCTGACATCCTTGTCACTGGCTGTAAGGGA
TACTGTCGTCGAAGGATATCAGTGTGAGGAAAACCCAAAGAAAAATGAGT
TGTACAGCGATAAACTCTGGTAACTAGGTCCTAAACAGCACTCTACAGTA
AAGAAGAAACGCCTTCACTCGCCTTGAACTGAATCAATCTGTGCCTTAAC
CTTTGAATGCCTTCCCCGCCTTCGCACACTTAATTCCTAAGCCTTCCTCC
GGATCTTAAAGCCCTCTATCGCCGTCCGCAACAAATCTGGTATAGCCTAC
AACATGTAGACGGCTCGATTCATTTTTGCGCGTTCGAACACTGCCGTCGT
CTGGCTAATTTGCTGATCTGAAACGGTCAGGTCAACCTGC

protein sequence of rna2947

>rna2947-protein ID=rna2947-protein|Name=rna2947|organism=Nannochloropsis gaditana|type=polypeptide|length=450bp
MSHSHAQRCSRGPSTCGAFFLPPGRSPRYSRLNSAKHIGEQLGDPSRAPT
WYPNLLLSKMKRLCQWSAIKLSKSTPENLIEENLHVPTHTELTLAASDPG
LPPLPPGLQGRALAAVHEGVLRLGMRIVAEPLSPDQWNLLIRLLSESEGG
KVQRYYHDKDRRLALGSILLQRAATSWVLGKRFSDINIERTRTYNKPYVN
AKDSRLPQWNYNVSHHGDWVVLASEPFHAVGTDLVDVGDRPFEAMTALEY
LEHFKRHLTPAEWQGLRSVGRDGEASQYRAFYRVWAMKEAYVKAIGVGLS
FPVRRLECSIVDVGADLTGMETDGVEEELMMDGYIMTDWRLRLVSLPPSY
LWCTAVGPKPTAHHLPSPGNVRHCAPCSACLYAPPSPSKGICGTSTAIAT
ATPASSAPHDILRKKVCVLTIRDCLPLGVQAQWDALSLVGPIANRSSNTG

mRNA from alignment at CM002460.1:329165..330599+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2947 ID=rna2947|Name=rna2947|organism=Nannochloropsis gaditana|type=mRNA|length=1435bp|location=Sequence derived from alignment at CM002460.1:329165..330599+ (Nannochloropsis gaditana)
ATGTCCCATTCGCACGCACAGAGATGCTCTCGGGGACCCTCAACTTGCGG
GGCGTTTTTCCTTCCGCCGGGTAGAAGCCCGCGCTACTCGCGACTTAATT
CGGTAGCATGATAGACTCAACGTTAATCATACATAGCGAACGCAATATAT
GTGATGGCACTGCCTGCGTTGCCATCCTACCCAGGCCAAACACATTGGAG
AGCAGCTCGGAGACCCCTCTCGTGCGCCCACTTGGTACCctaacctcctc
ctgtcgaaGATGAAGCGGCTTTGTCAATGGTCTGCCATCAAGCTGTCCAA
GTCGACTCCCGAAAATCTCATAGAGGAGAACCTGCATGTGCCAACGCATA
CAGAACTGACTTTAGCCGCAAGTGATCCGGGattgcccccccttcctcct
gggtTGCAGGGTCGAGCCCTGGCGGCTGTCCACGAGGGCGTTTTACGGCT
GGGCATGAGGATTGTGGCAGAGCCACTGTCGCCCGACCAATGGAACCTGC
TTATTCGGCTTCTGTCTGAGtcagagggggggaaagttCAGCGCTACTAT
CACGATAAAGATCGCCGACTGGCTCTAGGCAGCATTCTACTTCAACGGGC
AGCCACGAGCTGGGTGCTCGGCAAGCGGTTCAGTGACATAAACATCGAAC
GCACTAGAACTTACAATAAACCATATGTTAACGCAAAGGACTCCCGACTC
CCCCAGTGGAACTATAATGTATCGCATCATGGAGATTgggtggtgctggc
cagCGAGCCGTTTCACGCCGTCGGGACCGACCTCGTGGACGTCGGGGACA
GGCCTTTCGAGGCGATGACTGCCTTAGAGTACCTAGAGCATTTTAAGCGG
CACCTAACTCCCGCGGAGTGGCAGGGTTTGAGGAGCGTGGGACGGGATGG
CGAGGCAAGCCAGTACCGTGCCTTCTACCGCGTCTGGGCCATGAAAGAGG
CCTACGTAAAAGCCATTGGAGTGGGTTTGTCTTTTCCTGTCCGTCGTTTG
GAGTGCAGCATAGTAGACGTTGGAGCTGATTTGACAGGAATGGAAAcgga
cggcgtggaggaggagctcatGATGGACGGGTACATAATGACTGACTGGA
GGCTCCGCCTAGTAAGCCTGCCCCCGTCGTACCTGTGGTGCACAGCTGTT
GGACCGAAGCCCACTGCTCATCATCTCCCATCACCTGGTAACGTCCGCCA
TTGCGCTCCATGCTCTGCTTGTCTGTatgcgcctccctcgccctcaaAAG
GGATTTGCGGTACAAGTACAGCCATAGCGACAGCGACGCCTGCGTCGTCC
GCCCCGCATGATATACTACGAAAGAAGGTCTGCGTCCTAACAATTCGAGA
CTGTCTGCCACTCGGCGTCCAAGCTCAATGGGATGCCTTAAGTCTTGTTG
GGCCAATCGCTAATCGAAGTAGTAACACCGGATAA

Coding sequence (CDS) from alignment at CM002460.1:329165..330599+

>rna2947 ID=rna2947|Name=rna2947|organism=Nannochloropsis gaditana|type=CDS|length=2706bp|location=Sequence derived from alignment at CM002460.1:329165..330599+ (Nannochloropsis gaditana)
ATGTCCCATTCGCACGCACAGAGATGCTCTCGGGGACCCTCAACTTGCGG
GGCGTTTTTCCTTCCGCCGGGTAGAAGCCCGCGCTACTCGCGACTTAATT
CGGCCAAACACATTGGAGAGCAGCTCGGAGACCCCTCTCGTGCGCCCACT
TGGTACCctaacctcctcctgtcgaaGATGAAGCGGCTTTGTCAATGGTC
TGCCATCAAGCTGTCCAAGTCGACTCCCGAAAATCTCATAGAGGAGAACC
TGCATGTGCCAACGCATACAGAACTGACTTTAGCCGCAAGTGATCCGGGa
ttgcccccccttcctcctgggtTGCAGGGTCGAGCCCTGGCGGCTGTCCA
CGAGGGCGTTTTACGGCTGGGCATGAGGATTGTGGCAGAGCCACTGTCGC
CCGACCAATGGAACCTGCTTATTCGGCTTCTGTCTGAGtcagaggggggg
aaagttCAGCGCTACTATCACGATAAAGATCGCCGACTGGCTCTAGGCAG
CATTCTACTTCAACGGGCAGCCACGAGCTGGGTGCTCGGCAAGCGGTTCA
GTGACATAAACATCGAACGCACTAGAACTTACAATAAACCATATGTTAAC
GCAAAGGACTCCCGACTCCCCCAGTGGAACTATAATGTATCGCATCATGG
AGATTgggtggtgctggccagCGAGCCGTTTCACGCCGTCGGGACCGACC
TCGTGGACGTCGGGGACAGGCCTTTCGAGGCGATGACTGCCTTAGAGTAC
CTAGAGCATTTTAAGCGGCACCTAACTCCCGCGGAGTGGCAGGGTTTGAG
GAGCGTGGGACGGGATGGCGAGGCAAGCCAGTACCGTGCCTTCTACCGCG
TCTGGGCCATGAAAGAGGCCTACGTAAAAGCCATTGGAGTGGGTTTGTCT
TTTCCTGTCCGTCGTTTGGAGTGCAGCATAGTAGACGTTGGAGCTGATTT
GACAGGAATGGAAAcggacggcgtggaggaggagctcatGATGGACGGGT
ACATAATGACTGACTGGAGGCTCCGCCTAGTAAGCCTGCCCCCGTCGTAC
CTGTGGTGCACAGCTGTTGGACCGAAGCCCACTGCTCATCATCTCCCATC
ACCTGGTAACGTCCGCCATTGCGCTCCATGCTCTGCTTGTCTGTatgcgc
ctccctcgccctcaaAAGGGATTTGCGGTACAAGTACAGCCATAGCGACA
GCGACGCCTGCGTCGTCCGCCCCGCATGATATACTACGAAAGAAGGTCTG
CGTCCTAACAATTCGAGACTGTCTGCCACTCGGCGTCCAAGCTCAATGGG
ATGCCTTAAGTCTTGTTGGGCCAATCGCTAATCGAAGTAGTAACACCGGA
TAAATGTCCCATTCGCACGCACAGAGATGCTCTCGGGGACCCTCAACTTG
CGGGGCGTTTTTCCTTCCGCCGGGTAGAAGCCCGCGCTACTCGCGACTTA
ATTCGGCCAAACACATTGGAGAGCAGCTCGGAGACCCCTCTCGTGCGCCC
ACTTGGTACCctaacctcctcctgtcgaaGATGAAGCGGCTTTGTCAATG
GTCTGCCATCAAGCTGTCCAAGTCGACTCCCGAAAATCTCATAGAGGAGA
ACCTGCATGTGCCAACGCATACAGAACTGACTTTAGCCGCAAGTGATCCG
GGattgcccccccttcctcctgggtTGCAGGGTCGAGCCCTGGCGGCTGT
CCACGAGGGCGTTTTACGGCTGGGCATGAGGATTGTGGCAGAGCCACTGT
CGCCCGACCAATGGAACCTGCTTATTCGGCTTCTGTCTGAGtcagagggg
gggaaagttCAGCGCTACTATCACGATAAAGATCGCCGACTGGCTCTAGG
CAGCATTCTACTTCAACGGGCAGCCACGAGCTGGGTGCTCGGCAAGCGGT
TCAGTGACATAAACATCGAACGCACTAGAACTTACAATAAACCATATGTT
AACGCAAAGGACTCCCGACTCCCCCAGTGGAACTATAATGTATCGCATCA
TGGAGATTgggtggtgctggccagCGAGCCGTTTCACGCCGTCGGGACCG
ACCTCGTGGACGTCGGGGACAGGCCTTTCGAGGCGATGACTGCCTTAGAG
TACCTAGAGCATTTTAAGCGGCACCTAACTCCCGCGGAGTGGCAGGGTTT
GAGGAGCGTGGGACGGGATGGCGAGGCAAGCCAGTACCGTGCCTTCTACC
GCGTCTGGGCCATGAAAGAGGCCTACGTAAAAGCCATTGGAGTGGGTTTG
TCTTTTCCTGTCCGTCGTTTGGAGTGCAGCATAGTAGACGTTGGAGCTGA
TTTGACAGGAATGGAAAcggacggcgtggaggaggagctcatGATGGACG
GGTACATAATGACTGACTGGAGGCTCCGCCTAGTAAGCCTGCCCCCGTCG
TACCTGTGGTGCACAGCTGTTGGACCGAAGCCCACTGCTCATCATCTCCC
ATCACCTGGTAACGTCCGCCATTGCGCTCCATGCTCTGCTTGTCTGTatg
cgcctccctcgccctcaaAAGGGATTTGCGGTACAAGTACAGCCATAGCG
ACAGCGACGCCTGCGTCGTCCGCCCCGCATGATATACTACGAAAGAAGGT
CTGCGTCCTAACAATTCGAGACTGTCTGCCACTCGGCGTCCAAGCTCAAT
GGGATGCCTTAAGTCTTGTTGGGCCAATCGCTAATCGAAGTAGTAACACC
GGATAA

Synonyms

Publications