rna2946, rna2946 (mRNA) Nannochloropsis gaditana

Overview
Namerna2946
Unique Namerna2946
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1630
Alignment locationCM002460.1:326927..329262 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g34.6312.mrna
Orig protein idgnl|cribi|Naga_100034g34.6312
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:326927..329262 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g34gene2826Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2946rna2946-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27739.1cds2938Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2946 ID=rna2946|Name=rna2946|organism=Nannochloropsis gaditana|type=mRNA|length=1630bp
GGCATGGAGCTTTTCGCCACTTCTGCAATGTACGGCCATCCTCCCCATGA
TCTCTCTCCTTTTCAAATCAAAGGTGTGACACTTTCACCACCAAGAATAT
TTGGTGGCGGCCGACTCAAAAACTTTTTTGTGTTTTCTTTTCCAATAGAA
AAAAGTAGTAGTAAAGTAGTAGGCCGAGGAGTTAACCTCCCCTCCTTACT
TCCTCCATGCCAGGATAAAGAAAAACAAGTTGAGGAGAACCTGGATAAGG
ATGTACAGGGTGTGCGATGTGACCAAACATCGGGCATGGACCAAGTGACA
AGTTTAAAAAGACATGAGACAACTCGTGCGGGTGGCAGCCAACGAAACAA
GAGCATTAAAACATGGCCTTGTGTCGGAAAGTGGCCAGAGATGCTACCGA
TATGAAGTGACATTATCATTTGGTTTAAGCCGCGGAAACGAGAAATTTGC
AGGTTGACCTGACCGTTTCAGATCAGCAAATTAGCCAGACGACGGCAGTG
TTCGAACGCGCAAAAATGAATCGAGCCGTCTACATGTTGTAGGCTATACC
AGATTTGTTGCGGACGGCGATAGAGGGCTTTAAGATCCGGAGGAAGGCTT
AGGAATTAAGTGTGCGAAGGCGGGGAAGGCATTCAAAGGTTAAGGCACAG
ATTGATTCAGTTCAAGTATCCCTTACAGCCAGTGACAAGGATGTCAGATT
GGCGCCTTCGCACGTCTTCCTACTCAACAAGTTGGACAGCAGGATCGGCA
GGCTCTGTTTGACGCTGGTTCGTCAAAACCTCGATGTTTCCACCGCCATT
TTCCTCAGCTAATTGCGCCAGACTTGCCCCTTGAGCTTGACGAGCCAACT
CTAAGTCAATGGTGGAGAGGAGGCGCTGCTCCTCGTCGGTGTACTGCTTG
ACACCAGTTCGAGGCGTGACCTGTATGAGAGCGTCCCGTCGGATCTATTT
TGTGGTTGTCAGGTAAAGGTAAATTAATTTAAGGTATGTTCCCTGCTGAA
AAGAATGGGGTAAAGAATATTTGTTGGCTTGTTTGTCCCTTTCCTCGCAA
CATTGACAGGATTTCGACGCATCTCTCACCTGGCTGCCAGCGATTGCGAC
AGGTTTCGAGATTCCAAAGCCCAAAAGATCATTTTCATTGGCGGTGGAAA
ATTTTCCATCAAGATCCAAAAGCGCGGAAATACCCAGGTCGTCAAAAGCA
CGATTGTCTTTCTCCCAAGTTTCCTTGGTCAAAGGAAAGAGCAGATTATT
GAAAGTCAACTCGAAATTGTAGGGAAACTGCAGCCCTCGCAATTGAATTC
TGGTTTGCAGCGGATGAAGTACGAAAGAAGTGAGTAGTTTGTAAGCAATC
GTCACCCCAAAACCCATCCATCTATCTATGTATCCGTCAGTCAGTAAGCT
CACTTTTTTGCAGCAACTGGTCCACCTTCTCTACCGTAACAAGTGATAAG
AAGCGCCGCATTGTCATTCTCAAGCGCATAATTGATAACCCCGGGACGTT
CGGGTCCTAACGGATAGCCCTCGATCTCGGGCAGCCGCACAGTGCCCTGA
TTGTGGGAAACGCAAGCTTGAGACATGAGTAATAATACAAACCCCTTCGA
TGAATCTTGCACAAATCACCTTTGCAATTA
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protein sequence of rna2946

>rna2946-protein ID=rna2946-protein|Name=rna2946|organism=Nannochloropsis gaditana|type=polypeptide|length=223bp
MTNIFSLFLKCTTSFCCILLKHTMTIAVTSDRVLSFAGMVLGVAFGAFLL
LFVQCEGFVPAGPQRLLTPQYPTPASMDATEPTFGRTLISLKSDQDLKET
QNAAGVGISVMGRSLAVTGLFLSSFWGGGLEQVMAAPMATSRQQSTQRQE
RPFGKTKKNALKEENKELTDVIAKVICARFIEGVCIITHVSSLRFPQSGH
CAAARDRGLSVRTRTSRGYQLCA
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mRNA from alignment at CM002460.1:326927..329262-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2946 ID=rna2946|Name=rna2946|organism=Nannochloropsis gaditana|type=mRNA|length=2336bp|location=Sequence derived from alignment at CM002460.1:326927..329262- (Nannochloropsis gaditana)
TTAAGTCGCGAGTAGCGCGGGCTTCTACCCGGCGGAAGGAAAAACGCCCC
GCAAGTTGAGGGTCCCCGAGAGCATCTCTGTGCGTGCGAATGGGACATAT
TATCGGGTGAATCGGCGTAGTCAATCCCGGTAACCAGGCTTTTAGGCTCT
AGCGTACAATAAATCGTGAGACGGCCGCAGTCAGTCCAACGAAAGCTTTT
CTATCGGGTCACCGGCGATATGGGCATGGCGGCGTCCGAGGCGAGTGCGC
GGATGGTGAGGGCAAGCGAGCGGCAAGTGAGCAGTCAAGCTGCGGGCCCC
AGGCTTCCCCAGGACCCTCACGAAACTGTGAAGGTCGTGACAATTGTGAT
ATGGAGGCACAAAGCAGCAGTATTCTCGTATTGTGGGCGGTGCTCGATCA
ATTCGCTGGCACATGACAAACATTTTCTCCCTATTTCTGAAGTGCACAAC
GTCTTTCTGTTGTATCCTCTTAAAACACACTATGACCATCGCAGTGACAA
GCGACAGAGTGCTATCCTTTGCAGGGATGGTTTTGGGGGTTGCTTTCGGC
GCATTCCTGCTTCTTTTTGTCCAATGCGAGGGATTTGTCCCTGCAGGACC
TCAACGCCTTCTGACTCCTCAGTATCCCACTCCGGCCTCAATGGACGCCA
CTGAGCCGACGTTTGGCAGGACTCTCATTTCGCTGAAATCTGATCAAGAT
CTAAAGGAGACCCAAAATGCAGCTGGCGTCGGTATTTCCGTCATGGGACG
TTCTTTGGCTGTTACTGGCTTGTTCCTGTCTTCATTTTGGGGAGGAGGAC
TGGAGCAAGTGATGGCCGCTCCCATGGCAACTAGTAGGCAACAGAGCACG
CAGCGACAGGTGTGTACGCTCATTAGCGCCTTATTTGTCAGGAAATGTCT
GACGGAATATTCAAAACTCTCATATCGGACACACTGATTATCGTGCGTTT
TCTTTTCTGACACTTCACAGGAAAGACCTTTTGGCAAGACGAAAAAAAAT
GCACTGAAAGAAGAAAATAAGGAGCTAACTGACGTAATTGCAAAGGTGAT
TTGTGCAAGATTCATCGAAGGGGTTTGTATTATTACTCATGTCTCAAGCT
TGCGTTTCCCACAATCAGGGCACTGTGCGGCTGCCCGAGATCGAGGGCTA
TCCGTTAGGACCCGAACGTCCCGGGGTTATCAATTATGCGCTTGAGAATG
ACAATGCGGCGCTTCTTATCACTTGTTACGGTAGAGAAGGTGGACCAGTT
GCTGCAAAAAAGTGAGCTTACTGACTGACGGATACATAGATAGATGGATG
GGTTTTGGGGTGACGATTGCTTACAAACTACTCACTTCTTTCGTACTTCA
TCCGCTGCAAACCAGAATTCAATTGCGAGGGCTGCAGTTTCCCTACAATT
TCGAGTTGACTTTCAATAATCTGCTCTTTCCTTTGACCAAGGAAACTTGG
GAGAAAGACAATCGTGCTTTTGACGACCTGGGTATTTCCGCGCTTTTGGA
TCTTGATGGAAAATTTTCCACCGCCAATGAAAATGATCTTTTGGGCTTTG
GAATCTCGAAACCTGTCGCAATCGCTGGCAGCCAGGTGAGAGATGCGTCG
AAATCCTGTCAATGTTGCGAGGAAAGGGACAAACAAGCCAACAAATATTC
TTTACCCCATTCTTTTCAGCAGGGAACATACCTTAAATTAATTTACCTTT
ACCTGACAACCACAAAATAGATCCGACGGGACGCTCTCATACAGGTCACG
CCTCGAACTGGTGTCAAGCAGTACACCGACGAGGAGCAGCGCCTCCTCTC
CACCATTGACTTAGAGTTGGCTCGTCAAGCTCAAGGGGCAAGTCTGGCGC
AATTAGCTGAGGAAAATGGCGGTGGAAACATCGAGGTTTTGACGAACCAG
CGTCAAACAGAGCCTGCCGATCCTGCTGTCCAACTTGTTGAGTAGGAAGA
CGTGCGAAGGCGCCAATCTGACATCCTTGTCACTGGCTGTAAGGGATACT
GTCGTCGAAGGATATCAGTGTGAGGAAAACCCAAAGAAAAATGAGTTGTA
CAGCGATAAACTCTGGTAACTAGGTCCTAAACAGCACTCTACAGTAAAGA
AGAAACGCCTTCACTCGCCTTGAACTGAATCAATCTGTGCCTTAACCTTT
GAATGCCTTCCCCGCCTTCGCACACTTAATTCCTAAGCCTTCCTCCGGAT
CTTAAAGCCCTCTATCGCCGTCCGCAACAAATCTGGTATAGCCTACAACA
TGTAGACGGCTCGATTCATTTTTGCGCGTTCGAACACTGCCGTCGTCTGG
CTAATTTGCTGATCTGAAACGGTCAGGTCAACCTGC
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Coding sequence (CDS) from alignment at CM002460.1:326927..329262-

>rna2946 ID=rna2946|Name=rna2946|organism=Nannochloropsis gaditana|type=CDS|length=1344bp|location=Sequence derived from alignment at CM002460.1:326927..329262- (Nannochloropsis gaditana)
GAAAGACCTTTTGGCAAGACGAAAAAAAATGCACTGAAAGAAGAAAATAA
GGAGCTAACTGACGTAATTGCAAAGGTGATTTGTGCAAGATTCATCGAAG
GGGTTTGTATTATTACTCATGTCTCAAGCTTGCGTTTCCCACAATCAGGG
CACTGTGCGGCTGCCCGAGATCGAGGGCTATCCGTTAGGACCCGAACGTC
CCGGGGTTATCAATTATGCGCTTGAATGACAAACATTTTCTCCCTATTTC
TGAAGTGCACAACGTCTTTCTGTTGTATCCTCTTAAAACACACTATGACC
ATCGCAGTGACAAGCGACAGAGTGCTATCCTTTGCAGGGATGGTTTTGGG
GGTTGCTTTCGGCGCATTCCTGCTTCTTTTTGTCCAATGCGAGGGATTTG
TCCCTGCAGGACCTCAACGCCTTCTGACTCCTCAGTATCCCACTCCGGCC
TCAATGGACGCCACTGAGCCGACGTTTGGCAGGACTCTCATTTCGCTGAA
ATCTGATCAAGATCTAAAGGAGACCCAAAATGCAGCTGGCGTCGGTATTT
CCGTCATGGGACGTTCTTTGGCTGTTACTGGCTTGTTCCTGTCTTCATTT
TGGGGAGGAGGACTGGAGCAAGTGATGGCCGCTCCCATGGCAACTAGTAG
GCAACAGAGCACGCAGCGACAGGAAAGACCTTTTGGCAAGACGAAAAAAA
ATGCACTGAAAGAAGAAAATAAGGAGCTAACTGACGTAATTGCAAAGGTG
ATTTGTGCAAGATTCATCGAAGGGGTTTGTATTATTACTCATGTCTCAAG
CTTGCGTTTCCCACAATCAGGGCACTGTGCGGCTGCCCGAGATCGAGGGC
TATCCGTTAGGACCCGAACGTCCCGGGGTTATCAATTATGCGCTTGAATG
ACAAACATTTTCTCCCTATTTCTGAAGTGCACAACGTCTTTCTGTTGTAT
CCTCTTAAAACACACTATGACCATCGCAGTGACAAGCGACAGAGTGCTAT
CCTTTGCAGGGATGGTTTTGGGGGTTGCTTTCGGCGCATTCCTGCTTCTT
TTTGTCCAATGCGAGGGATTTGTCCCTGCAGGACCTCAACGCCTTCTGAC
TCCTCAGTATCCCACTCCGGCCTCAATGGACGCCACTGAGCCGACGTTTG
GCAGGACTCTCATTTCGCTGAAATCTGATCAAGATCTAAAGGAGACCCAA
AATGCAGCTGGCGTCGGTATTTCCGTCATGGGACGTTCTTTGGCTGTTAC
TGGCTTGTTCCTGTCTTCATTTTGGGGAGGAGGACTGGAGCAAGTGATGG
CCGCTCCCATGGCAACTAGTAGGCAACAGAGCACGCAGCGACAG
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Synonyms
Publications