rna2943, rna2943 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2943
Unique Name	rna2943
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	291
Alignment location	CM002460.1:318238..320079 +

Link to JBrowse

Properties


Property Name	Value
Product	uncharacterized protein
Orig transcript id	gnl\|cribi\|Naga_100034g38.6295.mrna
Orig protein id	gnl\|cribi\|Naga_100034g38.6295
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:318238..320079 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g38	gene2823	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2943	rna2943-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27722.1	cds2935	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:318238..320079+
coding sequence from alignment at CM002460.1:318238..320079+

mRNA sequence

>rna2943 ID=rna2943|Name=rna2943|organism=Nannochloropsis gaditana|type=mRNA|length=291bp
ATGTTACCCGCTCCAAGACACCTGCGACAGCCCCGCCACACGCGCGCATC
AGTTCTTCAAAGAGGGTTCGACCCCTTTGACCCGAAAGAGCAAATGGTCC
AAATTCCTCACGTCCGCTTCATTTTCAATTCCATCCTCCGGGACACCCGC
ACGGAGACGACAGTGATGGAAAGGCAGGGATGGGCTGGAGGAGAAAGGCG
TGCCTCTACTATGGAGAATAGGACCAATATAGCACGAAGAGACAGGGAGC
ATAGAAGGCGTCCGACTTCTAGTGAACGCTTCCATTCATAA

protein sequence of rna2943

>rna2943-protein ID=rna2943-protein|Name=rna2943|organism=Nannochloropsis gaditana|type=polypeptide|length=613bp
MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECF
LHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEG
DRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGML
LLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLV
GVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTR
VDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGD
ERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPH
SWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVT
SISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLV
IEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGART
ADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDP
APLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTG
TKEIIELSDEDSR

mRNA from alignment at CM002460.1:318238..320079+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2943 ID=rna2943|Name=rna2943|organism=Nannochloropsis gaditana|type=mRNA|length=1842bp|location=Sequence derived from alignment at CM002460.1:318238..320079+ (Nannochloropsis gaditana)
ATGATCGGGGATTCTCTTGCCGGCCTCGGTTTACGATTGCAAGCGAAGTG
GTTGGCAGAATGCCAGCAAAATATTCAGATATCCATCAATACTATGACAA
GTATAGAGGGTGAGGACGCTAAATACTTCGACCGGGTTTATGAATGTTTT
TTGCACTCGAACATACGGGATTCAGGTGCAGGCTGCTTTCCGCCAGATTT
CGCACTGTCTCGAAACAAGCGAATTGCAGGTCCACTTGTGGTGCAGGTAG
ACGCCATTAAGAATATTGGAGCTCCGGACGCGACTAGGCACAAAGAGGGA
GACCGAAACCGGTGCCTGCTTTTGGCATTGTCGGATGGACACCAGCAAGC
ACTTGGCCTCGAGTACCGCCCAATCCCCGAGCTACGTATTTCCACGGCGC
TGGGCTGCAAGATTGCGCTGCTGAATGTACAAATAAAAGAAGGTATGCTT
CTTTTGACGCGAGAAACAGTTCAAGTGCTGGGTGGCGGCCTGCATATAAG
TCTGGATCAGCTTTCTAATGGAGGGCTGTCGATCGGGCAGGCACGTGCAG
AGCAAGATGAGCGCAAGCCACTACTTCcctcacctccgcctccgctcgTC
GGCGTGGGCAGCGACCTTAATCGCGAATGCAGCGTcgcaggggaaaaggg
gggggcattCCATGAGAATAGACTGAGAGAAAGTACAAGTTTAAACCTTC
CCGTAGGACATCCAAGGGGCTCGTTCAACGACGATATTGATTGGACAAGA
GTCGACGTTCCATCGGAGTATCACCAGCTTGTATTATGGGAGACACAAGG
CACTAATGCGCAGCGAGGTGAAGGGCGAGCCAACCAAAACCATCTGAACT
GTGTCTCACCGGAAACGCGTGGGGTTTGCAGCGTACTTGAAGACGGCgac
gagaggaggggatcaAAACGGAAGAGGGCCGATGGTCCGGCATCTTACTC
TCCTGAAGGGGCGCAAGGATCCAATGGGGGAAAACCCACGCCCCGAACAT
CGCGGTCGGGGAGTGAGGATAAGAAGGCCCCGTCTTTCCATGGCCCTCAC
TCCtgggcgtcctcccccgggaTGCCTTCAACGGCCTCGCAATCCCAAGG
CAACCTAACGACTTTCTCCGGAGAGTGGCCCGGCGTGACGTTGGCGGATG
TCTGTGGGCACCTCCCGGGCCAGCACTTACGAGTGAAAGGCGTGGTTACG
TCCATATCACGCGCCAGAAATACTCGATCCGGCCTTCGCATTACTGTCCA
CGTCAGTGACGGGGCAGGACCCGACGTTGAGGCACGCCTCTCCGACGAGC
TCGTCTCGCAGGTATTGGGTTTGAGCGCGGTTGCGTTCAGCAACCTGGTG
ATCGAAGATCGCGCCGCGGCGGAGACAGTTATGAAAAGGCTTCCCCCGCG
ACTGGCGAGTCTTGAGGGAGTTTTTACCTTGAAGGTGCCGGCCGCAGGAG
GCAGTGGGGCtgatgaaagaagaggacaaaCAGAGCCCGGCGCGCGAACG
GCCGATTGCAAAAAGGAAATTGGGAAGCCAATCACCAAACCACACCTCCC
AATTTTATTGTCTTGCGAGCCCCCTGGTGCACAGGAATTTATGAGGCTTT
TGCACCTTTGCCAGATCGAATATGATCATCTTTGGGGAAAAGAAGACCCG
GCACCTTTGCCGTCAGTGAGGAAGTCACAGACTATGGAAGGCAATGGAAA
TAGTGGAATGCACGAAGGAAGCCCTGGACATCAGCAGTTCATGTTCTTGT
GTGAAAGGTTCACAGACAGTCTAGGCGAAGCCCGACAGTCTACGACCGGT
ACGAAAGAAATTATTGAATTGTCGGATGAAGATAGTCGTTGA

Coding sequence (CDS) from alignment at CM002460.1:318238..320079+

>rna2943 ID=rna2943|Name=rna2943|organism=Nannochloropsis gaditana|type=CDS|length=1842bp|location=Sequence derived from alignment at CM002460.1:318238..320079+ (Nannochloropsis gaditana)
ATGATCGGGGATTCTCTTGCCGGCCTCGGTTTACGATTGCAAGCGAAGTG
GTTGGCAGAATGCCAGCAAAATATTCAGATATCCATCAATACTATGACAA
GTATAGAGGGTGAGGACGCTAAATACTTCGACCGGGTTTATGAATGTTTT
TTGCACTCGAACATACGGGATTCAGGTGCAGGCTGCTTTCCGCCAGATTT
CGCACTGTCTCGAAACAAGCGAATTGCAGGTCCACTTGTGGTGCAGGTAG
ACGCCATTAAGAATATTGGAGCTCCGGACGCGACTAGGCACAAAGAGGGA
GACCGAAACCGGTGCCTGCTTTTGGCATTGTCGGATGGACACCAGCAAGC
ACTTGGCCTCGAGTACCGCCCAATCCCCGAGCTACGTATTTCCACGGCGC
TGGGCTGCAAGATTGCGCTGCTGAATGTACAAATAAAAGAAGGTATGCTT
CTTTTGACGCGAGAAACAGTTCAAGTGCTGGGTGGCGGCCTGCATATAAG
TCTGGATCAGCTTTCTAATGGAGGGCTGTCGATCGGGCAGGCACGTGCAG
AGCAAGATGAGCGCAAGCCACTACTTCcctcacctccgcctccgctcgTC
GGCGTGGGCAGCGACCTTAATCGCGAATGCAGCGTcgcaggggaaaaggg
gggggcattCCATGAGAATAGACTGAGAGAAAGTACAAGTTTAAACCTTC
CCGTAGGACATCCAAGGGGCTCGTTCAACGACGATATTGATTGGACAAGA
GTCGACGTTCCATCGGAGTATCACCAGCTTGTATTATGGGAGACACAAGG
CACTAATGCGCAGCGAGGTGAAGGGCGAGCCAACCAAAACCATCTGAACT
GTGTCTCACCGGAAACGCGTGGGGTTTGCAGCGTACTTGAAGACGGCgac
gagaggaggggatcaAAACGGAAGAGGGCCGATGGTCCGGCATCTTACTC
TCCTGAAGGGGCGCAAGGATCCAATGGGGGAAAACCCACGCCCCGAACAT
CGCGGTCGGGGAGTGAGGATAAGAAGGCCCCGTCTTTCCATGGCCCTCAC
TCCtgggcgtcctcccccgggaTGCCTTCAACGGCCTCGCAATCCCAAGG
CAACCTAACGACTTTCTCCGGAGAGTGGCCCGGCGTGACGTTGGCGGATG
TCTGTGGGCACCTCCCGGGCCAGCACTTACGAGTGAAAGGCGTGGTTACG
TCCATATCACGCGCCAGAAATACTCGATCCGGCCTTCGCATTACTGTCCA
CGTCAGTGACGGGGCAGGACCCGACGTTGAGGCACGCCTCTCCGACGAGC
TCGTCTCGCAGGTATTGGGTTTGAGCGCGGTTGCGTTCAGCAACCTGGTG
ATCGAAGATCGCGCCGCGGCGGAGACAGTTATGAAAAGGCTTCCCCCGCG
ACTGGCGAGTCTTGAGGGAGTTTTTACCTTGAAGGTGCCGGCCGCAGGAG
GCAGTGGGGCtgatgaaagaagaggacaaaCAGAGCCCGGCGCGCGAACG
GCCGATTGCAAAAAGGAAATTGGGAAGCCAATCACCAAACCACACCTCCC
AATTTTATTGTCTTGCGAGCCCCCTGGTGCACAGGAATTTATGAGGCTTT
TGCACCTTTGCCAGATCGAATATGATCATCTTTGGGGAAAAGAAGACCCG
GCACCTTTGCCGTCAGTGAGGAAGTCACAGACTATGGAAGGCAATGGAAA
TAGTGGAATGCACGAAGGAAGCCCTGGACATCAGCAGTTCATGTTCTTGT
GTGAAAGGTTCACAGACAGTCTAGGCGAAGCCCGACAGTCTACGACCGGT
ACGAAAGAAATTATTGAATTGTCGGATGAAGATAGTCGTTGA

Synonyms

Publications