EWM27722.1, cds2935 (CDS) Nannochloropsis gaditana

Overview
NameEWM27722.1
Unique Namecds2935
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:318238..320079 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27722.1
Productuncharacterized protein
Orig transcript idgnl|cribi|Naga_100034g38.6295.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:318238..320079 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005622intracellular
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
Vocabulary: INTERPRO
TermDefinition
IPR033472DUF1767
Homology
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|585109995|gb|EWM27722.1| (uncharacterized protein Naga_100034g38 [Nannochloropsis gaditana])

HSP 1 Score: 1254.97 bits (3246), Expect = 0.000e+0
Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query:    1 MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR 613
            MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR
Sbjct:    1 MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR 613          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1083863633|ref|XP_018626529.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X2 [Nicotiana tomentosiformis])

HSP 1 Score: 118.627 bits (296), Expect = 1.967e-24
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            IG  L GLGLRL+  WL  C + ++ S+   T ++      F   +E FL+S++   GAG  P D        + GP V+QVD I NI  P   R+++      RCL L+++DG Q   G+EYRPI +L +    G K+A+ NV ++ G+L+L  E ++VLGG
Sbjct:   88 IGRVLEGLGLRLRRDWLESCVRGLEGSVREFTQLDDNAKAKF--CFEQFLYSDMNYCGAGWLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQHVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 248          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|697184963|ref|XP_009601501.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X1 [Nicotiana tomentosiformis] >gi|1025340287|ref|XP_016508043.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X1 [Nicotiana tabacum])

HSP 1 Score: 118.627 bits (296), Expect = 2.535e-24
Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            IG  L GLGLRL+  WL  C + ++ S+   T ++      F   +E FL+S++   GAG  P D        + GP V+QVD I NI  P   R+++      RCL L+++DG Q   G+EYRPI +L +    G K+A+ NV ++ G+L+L  E ++VLGG
Sbjct:   88 IGRVLEGLGLRLRRDWLESCVRGLEGSVREFTQLDDNAKAKF--CFEQFLYSDMNYCGAGWLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQHVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 248          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|698461414|ref|XP_009781767.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X2 [Nicotiana sylvestris] >gi|1025333047|ref|XP_016506782.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X2 [Nicotiana tabacum])

HSP 1 Score: 117.857 bits (294), Expect = 4.059e-24
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            IG  L GLGLRL+  WL  C + ++ S+   T ++  D       +E FL+S++   GAG  P D        + GP V+QVD I NI  P   R+++      RCL L+++DG Q+  G+EYRPI +L +    G K+A+ NV ++ G+L+L  E ++VLGG
Sbjct:   87 IGRVLEGLGLRLRKDWLESCVRGLEGSVREFTRLD--DNAKAKLCFEQFLYSDMNYCGAGMLPRDVFKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 247          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|698461409|ref|XP_009781766.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X1 [Nicotiana sylvestris] >gi|1025333043|ref|XP_016506781.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X1 [Nicotiana tabacum])

HSP 1 Score: 117.857 bits (294), Expect = 4.951e-24
Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            IG  L GLGLRL+  WL  C + ++ S+   T ++  D       +E FL+S++   GAG  P D        + GP V+QVD I NI  P   R+++      RCL L+++DG Q+  G+EYRPI +L +    G K+A+ NV ++ G+L+L  E ++VLGG
Sbjct:   87 IGRVLEGLGLRLRKDWLESCVRGLEGSVREFTRLD--DNAKAKLCFEQFLYSDMNYCGAGMLPRDVFKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 247          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|702255790|ref|XP_010026274.1| (PREDICTED: recQ-mediated genome instability protein 1 [Eucalyptus grandis] >gi|629118637|gb|KCW83127.1| hypothetical protein EUGRSUZ_B00088 [Eucalyptus grandis])

HSP 1 Score: 117.087 bits (292), Expect = 7.902e-24
Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            + + L G+GLRL+ +WL  C   ++ S+   +S++          ++ FL S++  SGAG  PP+        + GP V+QVD I NI  P   R++       RCL L+++DG Q+  G+EYRP+P+L      G KIAL NV ++ G+L+L  E ++VLGG
Sbjct:   91 VTELLQGMGLRLRGEWLDSCLDALRTSLPHFSSLDPPSVAKL--CFQHFLLSDMNTSGAGVLPPEVHAMHLAHLPGPFVLQVDEIVNISCPLRGRYQNAPAGLKRCLKLSMTDGVQRVFGMEYRPLPDLHPLAPAGFKIALCNVHVRHGLLMLVPEAIEVLGG 251          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1091651661|ref|XP_018675447.1| (PREDICTED: recQ-mediated genome instability protein 1 [Musa acuminata subsp. malaccensis])

HSP 1 Score: 116.701 bits (291), Expect = 8.175e-24
Identity = 68/164 (41.46%), Postives = 90/164 (54.88%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGED-AKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            I + L  LGLRL+  WL  C   +   +   +  EG D A    R +E FL S++  SGAG  P +  L     + GP VVQVD I NI AP   R+ +      RCL L+++DG Q+  G+EYRPI EL +  A G K+ L NV I+ G+LLL  E   +LGG
Sbjct:   82 IDEFLRKLGLRLRPDWLESCADRL---MAAGSGFEGLDVAGKAKRCFEQFLLSDMNVSGAGVLPENVHLMHKTELEGPFVVQVDEIVNISAPLRERYHDTPAGCKRCLKLSITDGVQRVFGMEYRPIKELEVLAASGLKVVLRNVHIRRGLLLLVPEAFAILGG 242          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|823121632|ref|XP_012467635.1| (PREDICTED: recQ-mediated genome instability protein 1 [Gossypium raimondii] >gi|763740484|gb|KJB07983.1| hypothetical protein B456_001G056700 [Gossypium raimondii])

HSP 1 Score: 116.316 bits (290), Expect = 1.049e-23
Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            IGD L  +GL+L+ +WL  C Q ++ S+   ++++          ++ FL S++  SG G  P +        + GP V+QVD I NI  P   R++E      RCL L+++DG Q+  G+EYRPI +L++    G K+A+ NV I+ G+L+L  E++Q+LGG
Sbjct:   95 IGDFLLRMGLKLRREWLDSCVQGLESSVPRFSTLDASAKSKL--CFQQFLFSDMNYSGGGILPSNVDSMHLVDLKGPFVLQVDEIVNISCPLKGRYQETPSGIKRCLKLSMTDGVQRVFGMEYRPIKDLQVLAPAGLKVAICNVHIRHGLLVLVPESLQILGG 255          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|965656711|dbj|BAT73130.1| (hypothetical protein VIGAN_01059000 [Vigna angularis var. angularis])

HSP 1 Score: 115.931 bits (289), Expect = 1.215e-23
Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 0
Query:    4 DSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGED-AKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            D L  LGL L+  WLA C + +Q+S+   TS E  D A    R +E FL +++   GAG  PP       + + GP V+QVD I NI  P   R+++      RCL L+++DG Q+  G+EYRPI  L +    G K+A+ NV ++ G+L+L  E ++VLGG
Sbjct:   64 DFLRRLGLSLKRGWLASCLRQLQVSV---TSFEHLDVAAKAKRCFEQFLFADMNLCGAGVLPPAVDSMHLRVLPGPYVLQVDEIINITCPLRGRYEQAPPGPKRCLKLSMTDGVQRVFGMEYRPIKALEVCAPSGLKVAISNVHVRRGLLMLVPEVIEVLGG 222          
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1032278588|gb|OAO92916.1| (RMI1 [Arabidopsis thaliana])

HSP 1 Score: 115.931 bits (289), Expect = 2.127e-23
Identity = 59/164 (35.98%), Postives = 97/164 (59.15%), Query Frame = 0
Query:    2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIE-GEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
            I + L+ +G++L+ +W   C   ++ SI   + ++    AK+    +E F+ S++   G G  PP+ A      +AGP V+QVD I NIG P   R++  +    RCL L+++DG Q+  G+EYRPI +L++    G KI + +VQ++ G+L+L  E V+VLGG
Sbjct:  100 ISEVLSRMGIKLKREWWVSCVSGLETSIPQFSYLDVAAKAKH---CFEQFMFSDMNLCGGGVLPPNVASMNRIELAGPFVLQVDEIVNIGCPLKGRYENANAGLKRCLKLSMTDGVQRVFGMEYRPIKDLQVLAPAGLKIVVSSVQVRHGLLMLVPEIVEVLGG 260          
The following BLAST results are available for this feature:
BLAST of EWM27722.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585109995|gb|EWM27722.1|0.000e+0100.00uncharacterized protein Naga_100034g38 [Nannochlor... [more]
gi|1083863633|ref|XP_018626529.1|1.967e-2438.04PREDICTED: recQ-mediated genome instability protei... [more]
gi|697184963|ref|XP_009601501.1|2.535e-2438.04PREDICTED: recQ-mediated genome instability protei... [more]
gi|698461414|ref|XP_009781767.1|4.059e-2438.04PREDICTED: recQ-mediated genome instability protei... [more]
gi|698461409|ref|XP_009781766.1|4.951e-2438.04PREDICTED: recQ-mediated genome instability protei... [more]
gi|702255790|ref|XP_010026274.1|7.902e-2436.81PREDICTED: recQ-mediated genome instability protei... [more]
gi|1091651661|ref|XP_018675447.1|8.175e-2441.46PREDICTED: recQ-mediated genome instability protei... [more]
gi|823121632|ref|XP_012467635.1|1.049e-2336.20PREDICTED: recQ-mediated genome instability protei... [more]
gi|965656711|dbj|BAT73130.1|1.215e-2339.51hypothetical protein VIGAN_01059000 [Vigna angular... [more]
gi|1032278588|gb|OAO92916.1|2.127e-2335.98RMI1 [Arabidopsis thaliana][more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2943rna2943Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications