EWM27722.1, cds2935 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|585109995|gb|EWM27722.1| (uncharacterized protein Naga_100034g38 [Nannochloropsis gaditana]) HSP 1 Score: 1254.97 bits (3246), Expect = 0.000e+0 Identity = 613/613 (100.00%), Postives = 613/613 (100.00%), Query Frame = 0
Query: 1 MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR 613
MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR
Sbjct: 1 MIGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDRNRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGGGLHISLDQLSNGGLSIGQARAEQDERKPLLPSPPPPLVGVGSDLNRECSVAGEKGGAFHENRLRESTSLNLPVGHPRGSFNDDIDWTRVDVPSEYHQLVLWETQGTNAQRGEGRANQNHLNCVSPETRGVCSVLEDGDERRGSKRKRADGPASYSPEGAQGSNGGKPTPRTSRSGSEDKKAPSFHGPHSWASSPGMPSTASQSQGNLTTFSGEWPGVTLADVCGHLPGQHLRVKGVVTSISRARNTRSGLRITVHVSDGAGPDVEARLSDELVSQVLGLSAVAFSNLVIEDRAAAETVMKRLPPRLASLEGVFTLKVPAAGGSGADERRGQTEPGARTADCKKEIGKPITKPHLPILLSCEPPGAQEFMRLLHLCQIEYDHLWGKEDPAPLPSVRKSQTMEGNGNSGMHEGSPGHQQFMFLCERFTDSLGEARQSTTGTKEIIELSDEDSR 613
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1083863633|ref|XP_018626529.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X2 [Nicotiana tomentosiformis]) HSP 1 Score: 118.627 bits (296), Expect = 1.967e-24 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
IG L GLGLRL+ WL C + ++ S+ T ++ F +E FL+S++ GAG P D + GP V+QVD I NI P R+++ RCL L+++DG Q G+EYRPI +L + G K+A+ NV ++ G+L+L E ++VLGG
Sbjct: 88 IGRVLEGLGLRLRRDWLESCVRGLEGSVREFTQLDDNAKAKF--CFEQFLYSDMNYCGAGWLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQHVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 248
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|697184963|ref|XP_009601501.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X1 [Nicotiana tomentosiformis] >gi|1025340287|ref|XP_016508043.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X1 [Nicotiana tabacum]) HSP 1 Score: 118.627 bits (296), Expect = 2.535e-24 Identity = 62/163 (38.04%), Postives = 92/163 (56.44%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
IG L GLGLRL+ WL C + ++ S+ T ++ F +E FL+S++ GAG P D + GP V+QVD I NI P R+++ RCL L+++DG Q G+EYRPI +L + G K+A+ NV ++ G+L+L E ++VLGG
Sbjct: 88 IGRVLEGLGLRLRRDWLESCVRGLEGSVREFTQLDDNAKAKF--CFEQFLYSDMNYCGAGWLPRDVHKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQHVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 248
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|698461414|ref|XP_009781767.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X2 [Nicotiana sylvestris] >gi|1025333047|ref|XP_016506782.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X2 [Nicotiana tabacum]) HSP 1 Score: 117.857 bits (294), Expect = 4.059e-24 Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
IG L GLGLRL+ WL C + ++ S+ T ++ D +E FL+S++ GAG P D + GP V+QVD I NI P R+++ RCL L+++DG Q+ G+EYRPI +L + G K+A+ NV ++ G+L+L E ++VLGG
Sbjct: 87 IGRVLEGLGLRLRKDWLESCVRGLEGSVREFTRLD--DNAKAKLCFEQFLYSDMNYCGAGMLPRDVFKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 247
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|698461409|ref|XP_009781766.1| (PREDICTED: recQ-mediated genome instability protein 1 isoform X1 [Nicotiana sylvestris] >gi|1025333043|ref|XP_016506781.1| PREDICTED: recQ-mediated genome instability protein 1-like isoform X1 [Nicotiana tabacum]) HSP 1 Score: 117.857 bits (294), Expect = 4.951e-24 Identity = 62/163 (38.04%), Postives = 93/163 (57.06%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
IG L GLGLRL+ WL C + ++ S+ T ++ D +E FL+S++ GAG P D + GP V+QVD I NI P R+++ RCL L+++DG Q+ G+EYRPI +L + G K+A+ NV ++ G+L+L E ++VLGG
Sbjct: 87 IGRVLEGLGLRLRKDWLESCVRGLEGSVREFTRLD--DNAKAKLCFEQFLYSDMNYCGAGMLPRDVFKLHLVDLKGPFVLQVDEIVNISCPLRDRYQKAAAGIKRCLKLSMTDGIQRVFGMEYRPIKDLDVLAPSGLKVAICNVHVRHGLLMLVPEVIEVLGG 247
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|702255790|ref|XP_010026274.1| (PREDICTED: recQ-mediated genome instability protein 1 [Eucalyptus grandis] >gi|629118637|gb|KCW83127.1| hypothetical protein EUGRSUZ_B00088 [Eucalyptus grandis]) HSP 1 Score: 117.087 bits (292), Expect = 7.902e-24 Identity = 60/163 (36.81%), Postives = 93/163 (57.06%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
+ + L G+GLRL+ +WL C ++ S+ +S++ ++ FL S++ SGAG PP+ + GP V+QVD I NI P R++ RCL L+++DG Q+ G+EYRP+P+L G KIAL NV ++ G+L+L E ++VLGG
Sbjct: 91 VTELLQGMGLRLRGEWLDSCLDALRTSLPHFSSLDPPSVAKL--CFQHFLLSDMNTSGAGVLPPEVHAMHLAHLPGPFVLQVDEIVNISCPLRGRYQNAPAGLKRCLKLSMTDGVQRVFGMEYRPLPDLHPLAPAGFKIALCNVHVRHGLLMLVPEAIEVLGG 251
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1091651661|ref|XP_018675447.1| (PREDICTED: recQ-mediated genome instability protein 1 [Musa acuminata subsp. malaccensis]) HSP 1 Score: 116.701 bits (291), Expect = 8.175e-24 Identity = 68/164 (41.46%), Postives = 90/164 (54.88%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGED-AKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
I + L LGLRL+ WL C + + + EG D A R +E FL S++ SGAG P + L + GP VVQVD I NI AP R+ + RCL L+++DG Q+ G+EYRPI EL + A G K+ L NV I+ G+LLL E +LGG
Sbjct: 82 IDEFLRKLGLRLRPDWLESCADRL---MAAGSGFEGLDVAGKAKRCFEQFLLSDMNVSGAGVLPENVHLMHKTELEGPFVVQVDEIVNISAPLRERYHDTPAGCKRCLKLSITDGVQRVFGMEYRPIKELEVLAASGLKVVLRNVHIRRGLLLLVPEAFAILGG 242
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|823121632|ref|XP_012467635.1| (PREDICTED: recQ-mediated genome instability protein 1 [Gossypium raimondii] >gi|763740484|gb|KJB07983.1| hypothetical protein B456_001G056700 [Gossypium raimondii]) HSP 1 Score: 116.316 bits (290), Expect = 1.049e-23 Identity = 59/163 (36.20%), Postives = 95/163 (58.28%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
IGD L +GL+L+ +WL C Q ++ S+ ++++ ++ FL S++ SG G P + + GP V+QVD I NI P R++E RCL L+++DG Q+ G+EYRPI +L++ G K+A+ NV I+ G+L+L E++Q+LGG
Sbjct: 95 IGDFLLRMGLKLRREWLDSCVQGLESSVPRFSTLDASAKSKL--CFQQFLFSDMNYSGGGILPSNVDSMHLVDLKGPFVLQVDEIVNISCPLKGRYQETPSGIKRCLKLSMTDGVQRVFGMEYRPIKDLQVLAPAGLKVAICNVHIRHGLLVLVPESLQILGG 255
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|965656711|dbj|BAT73130.1| (hypothetical protein VIGAN_01059000 [Vigna angularis var. angularis]) HSP 1 Score: 115.931 bits (289), Expect = 1.215e-23 Identity = 64/162 (39.51%), Postives = 93/162 (57.41%), Query Frame = 0
Query: 4 DSLAGLGLRLQAKWLAECQQNIQISINTMTSIEGED-AKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
D L LGL L+ WLA C + +Q+S+ TS E D A R +E FL +++ GAG PP + + GP V+QVD I NI P R+++ RCL L+++DG Q+ G+EYRPI L + G K+A+ NV ++ G+L+L E ++VLGG
Sbjct: 64 DFLRRLGLSLKRGWLASCLRQLQVSV---TSFEHLDVAAKAKRCFEQFLFADMNLCGAGVLPPAVDSMHLRVLPGPYVLQVDEIINITCPLRGRYEQAPPGPKRCLKLSMTDGVQRVFGMEYRPIKALEVCAPSGLKVAISNVHVRRGLLMLVPEVIEVLGG 222
BLAST of EWM27722.1 vs. NCBI_GenBank
Match: gi|1032278588|gb|OAO92916.1| (RMI1 [Arabidopsis thaliana]) HSP 1 Score: 115.931 bits (289), Expect = 2.127e-23 Identity = 59/164 (35.98%), Postives = 97/164 (59.15%), Query Frame = 0
Query: 2 IGDSLAGLGLRLQAKWLAECQQNIQISINTMTSIE-GEDAKYFDRVYECFLHSNIRDSGAGCFPPDFALSRNKRIAGPLVVQVDAIKNIGAPDATRHKEGDR--NRCLLLALSDGHQQALGLEYRPIPELRISTALGCKIALLNVQIKEGMLLLTRETVQVLGG 162
I + L+ +G++L+ +W C ++ SI + ++ AK+ +E F+ S++ G G PP+ A +AGP V+QVD I NIG P R++ + RCL L+++DG Q+ G+EYRPI +L++ G KI + +VQ++ G+L+L E V+VLGG
Sbjct: 100 ISEVLSRMGIKLKREWWVSCVSGLETSIPQFSYLDVAAKAKH---CFEQFMFSDMNLCGGGVLPPNVASMNRIELAGPFVLQVDEIVNIGCPLKGRYENANAGLKRCLKLSMTDGVQRVFGMEYRPIKDLQVLAPAGLKIVVSSVQVRHGLLMLVPEIVEVLGG 260 The following BLAST results are available for this feature:
BLAST of EWM27722.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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