rna2939, rna2939 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2939
Unique Name	rna2939
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	255
Alignment location	CM002460.1:315008..316293 +

Link to JBrowse

Properties


Property Name	Value
Product	Methyltransferase FkbM
Orig transcript id	gnl\|cribi\|Naga_100034g42.6287.mrna
Orig protein id	gnl\|cribi\|Naga_100034g42.6287
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:315008..316293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g42	gene2819	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2939	rna2939-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27714.1	cds2931	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:315008..316293+
coding sequence from alignment at CM002460.1:315008..316293+

mRNA sequence

>rna2939 ID=rna2939|Name=rna2939|organism=Nannochloropsis gaditana|type=mRNA|length=255bp
ATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAATATTTTCTCTAATCA
AGAGCAAAGTCTTGGACGAGCTCGTGGACGAGCTCTAAGTGACGGGATTT
TCCGGGTATTCGGGGGAGGCTTAGACGAAACAGATGCCTCTCTTGCAGGA
AAGAACAATGTGAAATTGGTTACATTCTCCTTGTTCTTCTACAGGAAGAC
GCCGGTCTCTTCCTCCTTCCCTTTTTTTTATCACTCAATGAGCTTTCCTT
TATAA

protein sequence of rna2939

>rna2939-protein ID=rna2939-protein|Name=rna2939|organism=Nannochloropsis gaditana|type=polypeptide|length=336bp
MPKKWHCYEKTRAWSLAFPSILLLLFVSQLWWHFDDITCTGRSSINGKCT
TRLANAILEKEIWQDVENDSPDKDMHLASPTAHLKTEFQVASPGYPHGIL
EYVTKTHNGEKAVTESFHHIIAATKCNGLVLDIGANTGFYSMLTLSEGCK
HVVSFDPQPSCVRHIEHGLVKNDFKHGAIVPRPVDYVSGRTLELNPKYDC
AGRWPVLQHEGKAPDPADLIKVETVTLTETLPYNSYISLAKVDTEGAEYR
VLLAMMPFDRQGVIDQFVSLVRDHGFSCRPLEIFPWAANDFYTKENVTGL
AKRIDSAVQLNICFITIRFNTEQIGSDGIRLTYCLV

mRNA from alignment at CM002460.1:315008..316293+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2939 ID=rna2939|Name=rna2939|organism=Nannochloropsis gaditana|type=mRNA|length=1286bp|location=Sequence derived from alignment at CM002460.1:315008..316293+ (Nannochloropsis gaditana)
ATGCCGAAAAAATGGCATTGCTATGAGAAGACAAGGGCGTGGTCTTTagc
ttttccctccatatTACTTCTTCTGTTCGTCTCACAACTTTGGTGGCACT
TCGATGACATCACTTGTACCGGGAGGAGCTCAATTAATGGAAAATGTACC
ACTCGCTTAGCCAATGCAATCTTAGAAAAAGAAATCTGGCAAGACGTGGA
GAATGATTCACCGGACAAAGACATGCATTTGGCGTCTCCAACAGCTCATT
TGAAGACTGAGTTTCAAGTGGCGAGCCCAGGTTATCCCCACGGCATTCTA
GAATACGTAACAAAAACCCACAACGGTGAGAAAGCTGTCACGGAATCCTT
TCATCACATCATTGCTGCCACGAAGTGCAATGGTCTGGTACTTGATATTG
GGGCGAACACTGGCTTCTACAGTATGCTTACGCTTTCCGAGGGCTGCAAG
CATGTTGTCTCATTTGATCCGCAGCCAAGCTGTGTGCGCCACATCGAACA
TGGGCTGGTCAAAAACGACTTTAAACATGGGGCGATAGTGCCACGGCCCG
TTGATTACGTATCCGGTCGAACGCTTGAGCTTAACCCGAAATATGACTGC
GCAGGACGGTGGCCCGTGCTACAGCATGAAGGTAAAGCACCTGACCCAGC
TGATCTAATAAAGGTGAGTTATTTGCTGTTGCTTGAAAATTCAAACCGAT
TATATTCTCTTGGACTATCGACGTAGCCCGGCAACAGGAGATCATCTAAT
CAGTGAGGAAAATTCTTCGTAATCACTACGGCCCCCCATCTACCAGGTTG
AAACAGTCACTTTAACAGAAACCTTGCCGTACAACAGTTACATATCGTTG
GCCAAAGTGGATACGGAAGGAGCTGAATATAGGGTTTTGCTGGCCATGAT
GCCTTTTGTGGAGCGTAACATGGTCGAAAATATAATTTTCGAAATAACAC
CAAGGTGGTGGACGCCTATTCATGGCTTATAGGACCGACAAGGTGTTATC
GATCAATTCGTTTCTCTCGTGAGGGATCATGGCTTCAGCTGCCGGCCATT
GGAAATCTTCCCTTGGGCTGCCAATGATTTCTACACGAAAGAAAACGTGA
CTGGCTTAGCCAAGAGGATCGACTCCGCCGTGCAAGTTGATTTCTGGTTT
TGTAAGGAGAAATCCTGCTGGTGAGGACGATATCTCGTTTGATGGAATTT
AGTTGAATATCTGTTTCATTACAATTAGATTCAATACGGAGCAAATTGGC
AGTGATGGAATTAGGTTAACATATTGCCTCGTATAA

Coding sequence (CDS) from alignment at CM002460.1:315008..316293+

>rna2939 ID=rna2939|Name=rna2939|organism=Nannochloropsis gaditana|type=CDS|length=4044bp|location=Sequence derived from alignment at CM002460.1:315008..316293+ (Nannochloropsis gaditana)
ATGCCGAAAAAATGGCATTGCTATGAGAAGACAAGGGCGTGGTCTTTagc
ttttccctccatatTACTTCTTCTGTTCGTCTCACAACTTTGGTGGCACT
TCGATGACATCACTTGTACCGGGAGGAGCTCAATTAATGGAAAATGTACC
ACTCGCTTAGCCAATGCAATCTTAGAAAAAGAAATCTGGCAAGACGTGGA
GAATGATTCACCGGACAAAGACATGCATTTGGCGTCTCCAACAGCTCATT
TGAAGACTGAGTTTCAAGTGGCGAGCCCAGGTTATCCCCACGGCATTCTA
GAATACGTAACAAAAACCCACAACGGTGAGAAAGCTGTCACGGAATCCTT
TCATCACATCATTGCTGCCACGAAGTGCAATGGTCTGGTACTTGATATTG
GGGCGAACACTGGCTTCTACAGTATGCTTACGCTTTCCGAGGGCTGCAAG
CATGTTGTCTCATTTGATCCGCAGCCAAGCTGTGTGCGCCACATCGAACA
TGGGCTGGTCAAAAACGACTTTAAACATGGGGCGATAGTGCCACGGCCCG
TTGATTACGTATCCGGTCGAACGCTTGAGCTTAACCCGAAATATGACTGC
GCAGGACGGTGGCCCGTGCTACAGCATGAAGGTAAAGCACCTGACCCAGC
TGATCTAATAAAGGTTGAAACAGTCACTTTAACAGAAACCTTGCCGTACA
ACAGTTACATATCGTTGGCCAAAGTGGATACGGAAGGAGCTGAATATAGG
GTTTTGCTGGCCATGATGCCTTTTGACCGACAAGGTGTTATCGATCAATT
CGTTTCTCTCGTGAGGGATCATGGCTTCAGCTGCCGGCCATTGGAAATCT
TCCCTTGGGCTGCCAATGATTTCTACACGAAAGAAAACGTGACTGGCTTA
GCCAAGAGGATCGACTCCGCCGTGCAATTGAATATCTGTTTCATTACAAT
TAGATTCAATACGGAGCAAATTGGCAGTGATGGAATTAGGTTAACATATT
GCCTCGTATAAATGCCGAAAAAATGGCATTGCTATGAGAAGACAAGGGCG
TGGTCTTTagcttttccctccatatTACTTCTTCTGTTCGTCTCACAACT
TTGGTGGCACTTCGATGACATCACTTGTACCGGGAGGAGCTCAATTAATG
GAAAATGTACCACTCGCTTAGCCAATGCAATCTTAGAAAAAGAAATCTGG
CAAGACGTGGAGAATGATTCACCGGACAAAGACATGCATTTGGCGTCTCC
AACAGCTCATTTGAAGACTGAGTTTCAAGTGGCGAGCCCAGGTTATCCCC
ACGGCATTCTAGAATACGTAACAAAAACCCACAACGGTGAGAAAGCTGTC
ACGGAATCCTTTCATCACATCATTGCTGCCACGAAGTGCAATGGTCTGGT
ACTTGATATTGGGGCGAACACTGGCTTCTACAGTATGCTTACGCTTTCCG
AGGGCTGCAAGCATGTTGTCTCATTTGATCCGCAGCCAAGCTGTGTGCGC
CACATCGAACATGGGCTGGTCAAAAACGACTTTAAACATGGGGCGATAGT
GCCACGGCCCGTTGATTACGTATCCGGTCGAACGCTTGAGCTTAACCCGA
AATATGACTGCGCAGGACGGTGGCCCGTGCTACAGCATGAAGGTAAAGCA
CCTGACCCAGCTGATCTAATAAAGGTTGAAACAGTCACTTTAACAGAAAC
CTTGCCGTACAACAGTTACATATCGTTGGCCAAAGTGGATACGGAAGGAG
CTGAATATAGGGTTTTGCTGGCCATGATGCCTTTTGACCGACAAGGTGTT
ATCGATCAATTCGTTTCTCTCGTGAGGGATCATGGCTTCAGCTGCCGGCC
ATTGGAAATCTTCCCTTGGGCTGCCAATGATTTCTACACGAAAGAAAACG
TGACTGGCTTAGCCAAGAGGATCGACTCCGCCGTGCAATTGAATATCTGT
TTCATTACAATTAGATTCAATACGGAGCAAATTGGCAGTGATGGAATTAG
GTTAACATATTGCCTCGTATAAATGCCGAAAAAATGGCATTGCTATGAGA
AGACAAGGGCGTGGTCTTTagcttttccctccatatTACTTCTTCTGTTC
GTCTCACAACTTTGGTGGCACTTCGATGACATCACTTGTACCGGGAGGAG
CTCAATTAATGGAAAATGTACCACTCGCTTAGCCAATGCAATCTTAGAAA
AAGAAATCTGGCAAGACGTGGAGAATGATTCACCGGACAAAGACATGCAT
TTGGCGTCTCCAACAGCTCATTTGAAGACTGAGTTTCAAGTGGCGAGCCC
AGGTTATCCCCACGGCATTCTAGAATACGTAACAAAAACCCACAACGGTG
AGAAAGCTGTCACGGAATCCTTTCATCACATCATTGCTGCCACGAAGTGC
AATGGTCTGGTACTTGATATTGGGGCGAACACTGGCTTCTACAGTATGCT
TACGCTTTCCGAGGGCTGCAAGCATGTTGTCTCATTTGATCCGCAGCCAA
GCTGTGTGCGCCACATCGAACATGGGCTGGTCAAAAACGACTTTAAACAT
GGGGCGATAGTGCCACGGCCCGTTGATTACGTATCCGGTCGAACGCTTGA
GCTTAACCCGAAATATGACTGCGCAGGACGGTGGCCCGTGCTACAGCATG
AAGGTAAAGCACCTGACCCAGCTGATCTAATAAAGGTTGAAACAGTCACT
TTAACAGAAACCTTGCCGTACAACAGTTACATATCGTTGGCCAAAGTGGA
TACGGAAGGAGCTGAATATAGGGTTTTGCTGGCCATGATGCCTTTTGACC
GACAAGGTGTTATCGATCAATTCGTTTCTCTCGTGAGGGATCATGGCTTC
AGCTGCCGGCCATTGGAAATCTTCCCTTGGGCTGCCAATGATTTCTACAC
GAAAGAAAACGTGACTGGCTTAGCCAAGAGGATCGACTCCGCCGTGCAAT
TGAATATCTGTTTCATTACAATTAGATTCAATACGGAGCAAATTGGCAGT
GATGGAATTAGGTTAACATATTGCCTCGTATAAATGCCGAAAAAATGGCA
TTGCTATGAGAAGACAAGGGCGTGGTCTTTagcttttccctccatatTAC
TTCTTCTGTTCGTCTCACAACTTTGGTGGCACTTCGATGACATCACTTGT
ACCGGGAGGAGCTCAATTAATGGAAAATGTACCACTCGCTTAGCCAATGC
AATCTTAGAAAAAGAAATCTGGCAAGACGTGGAGAATGATTCACCGGACA
AAGACATGCATTTGGCGTCTCCAACAGCTCATTTGAAGACTGAGTTTCAA
GTGGCGAGCCCAGGTTATCCCCACGGCATTCTAGAATACGTAACAAAAAC
CCACAACGGTGAGAAAGCTGTCACGGAATCCTTTCATCACATCATTGCTG
CCACGAAGTGCAATGGTCTGGTACTTGATATTGGGGCGAACACTGGCTTC
TACAGTATGCTTACGCTTTCCGAGGGCTGCAAGCATGTTGTCTCATTTGA
TCCGCAGCCAAGCTGTGTGCGCCACATCGAACATGGGCTGGTCAAAAACG
ACTTTAAACATGGGGCGATAGTGCCACGGCCCGTTGATTACGTATCCGGT
CGAACGCTTGAGCTTAACCCGAAATATGACTGCGCAGGACGGTGGCCCGT
GCTACAGCATGAAGGTAAAGCACCTGACCCAGCTGATCTAATAAAGGTTG
AAACAGTCACTTTAACAGAAACCTTGCCGTACAACAGTTACATATCGTTG
GCCAAAGTGGATACGGAAGGAGCTGAATATAGGGTTTTGCTGGCCATGAT
GCCTTTTGACCGACAAGGTGTTATCGATCAATTCGTTTCTCTCGTGAGGG
ATCATGGCTTCAGCTGCCGGCCATTGGAAATCTTCCCTTGGGCTGCCAAT
GATTTCTACACGAAAGAAAACGTGACTGGCTTAGCCAAGAGGATCGACTC
CGCCGTGCAATTGAATATCTGTTTCATTACAATTAGATTCAATACGGAGC
AAATTGGCAGTGATGGAATTAGGTTAACATATTGCCTCGTATAA

Synonyms

Publications