rna2938, rna2938 (mRNA) Nannochloropsis gaditana

Overview
Namerna2938
Unique Namerna2938
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2359
Alignment locationCM002460.1:314137..314458 -

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g43.6292.mrna
Orig protein idgnl|cribi|Naga_100034g43.6292
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:314137..314458 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100034g43gene2818Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2938rna2938-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27719.1cds2930Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2938 ID=rna2938|Name=rna2938|organism=Nannochloropsis gaditana|type=mRNA|length=2359bp
TGCAAAAGCCCGCACGGCCCCCAGGCCTCCACACGCGAGCCCCAAAGCTA
TCAAGCGCTTCACCATGGAGACAACTTTGATCTATATCTGTTGAATGTTG
ATGAAAAACCGTCGGATTTTTAAAATCGGAATTGCCTCAATCTGACGGGT
GCGGCGATCTGAGCTTTTTCTCGTCGTGGGCTGGTTGATGTTGACGTTGT
GGAGAGGAAATTTTGGTTCGCCCTACTTGTAAATTATGACAACACCGCGC
CTGTCGTCATCATACGTCATGTTCTTGACAACACAATCTAAGCAGGTCAT
AAGCAGGCAGTTGAGCGTCTCAAAGGGTCCATGAGGAGTCTGATTTGTAG
CCTCCTCAAGGGGCACAATACGCAATGCCAGGGGACGCGGTTGGTCGCTT
CTGGAAGTTTGTGGTCGACGAGAATGCCTGTCTTCGCCCTTATGATTGGT
TCGTGTACGTCAGCCTCCATACTGCTCAATTCACCACGGGCCAGCCACGT
CCAACACCGCCTTTTTCTCTCAAGCTGTCACAGATCATTTAGAAAAGAGA
CAGAGTGTGAGGCAGATTTGGAAGATGTGGATAAGATGAGGAATCTCGAT
GTTCGACAGCCCAGTATGGAGACGGAAAAAGATGTAGGTCTGGCTTTAAG
GGAGGTTCAGGATTTGTACAAAGAAGGTAAATACACCGAGGCCCTCCAGG
TGTCTTTGGGTATGAAAGATTGGCTAGAGCGGGAACTGGGTGAGGATCAT
CCTGTTTACGCGTCTTGTTTAAATAATGTTGCCTTGATGCATAAGATGAC
GAATGAATTGGAGGACGCGGTCCATTACTATGCCATGGCGCTTGACACGT
ACAAGCGGAGTGTGGGCGTCAATCATCGATCATATGCCACCGCGCTAAAT
AATTTAGGGCTGGTTTTCTTGATGCAAGCTCAGCAGGCAGAGGCAAATAA
GGGGGGAAAGATGGAGGCATTGGCTCTCTTTGAAAGCGCGGAAGCCACCT
TGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCCTAGAAGACGACGACCCT
GCGCTCTTAACAACACGCAGCAATCTTGCCTCCATCCTGCAGCGCACAGG
CCGAGGGGTTGAGGCGGAGGAGATGATGCGCACGACGATATCTCGGGTGC
AGGAGAAGGCGCGAGGGAAGGCGTCTCCCGAGGTGGCCACGGCGATGAAC
AACTTGGGCTACTTGCTCAAGGAGGAGGGACGACTGGGGGAGTCCCGAGC
GCTCTATAAAGAAGCCTTGCGGATTCGGAGAGCCTTGTATCCGAAAGAAC
ACCCCCTTGTCATCGTCTCTCTCAACAACCTTGCCGAGCTCTGTCTGGTC
ACCCCGGGGCTTGAAGGCGAAGGAAGGGCGCTTCAGGACGAGATTTTGAA
ACTTTTGAACCCGGTAAGGCGTGATGGCGATGGAAGCAAGAGCGTAGGTA
TGATACACGAGGAAAAGCCAAATTGAGTACCTCATCCGAAAAGGAATGCC
AGGGCCCAGTTCGATCTGCGCTGCTGTGCTTTGAACACGCACGTATCCTG
CTGCTTTTGCCCTTCTTTTGGTTGTGGAGGAGGTATCAGGGCTTTGTAGC
AAAATTCTATTTTGAATTTTTCACATGCGGCATTTCACTCGTTTTTCAGC
TGTTCTGTCACGATAGGTTTTGAAATAGGAGAACGTTAAATGATTCTGTC
AACGTGATATAACGCCTCTTACTATTATAATTTGATCCGATGAAATGTAC
GACTGTTAAGACACATCCATGCAAACTCAAATCATCTGTTCTGTTTGCCT
CGTAAGAGCAGTTTGATGCGTAGTCCGAAAATTGAGTCTCTACGACTTGG
TCGATAAGCCTCTGAACTCAAGGTTGAGAGAGCACTTCCGGACAAGTCCA
TCTCTGGAACCATTTACTCCCTCCCTCCCTCCCTCTCTCCCTCCCTCACC
GCTTTTAACTGGAGTTGCTTCCGCGGTGCGCGTCTTTCCATGCGTATCCA
GTGTCAAGTAGTTTAACGAATGAAGTTCGTGGCTTATAAAGGAAAGCTCA
TTGAGTGATAAAAAAAAGGGAAGGAGGAAGAGACCGGCGTCTTCCTGTAG
AAGAACAAGGAGAATGTAACCAATTTCACATTGTTCTTTCCTGCAAGAGA
GGCATCTGTTTCGTCTAAGCCTCCCCCGAATACCCGGAAAATCCCGTCAC
TTAGAGCTCGTCCACGAGCTCGTCCAAGACTTTGCTCTTGACTTGGTATT
TTTGGGAAGAACAGAACAAATCAATTAAAGAGCTTCGCCTTTGGACATTT
TGCTAGACTTAGAGAAAATATTTGAACAAGTTTTGCTGGGCCGCCTCTCA
TGCATCAGA
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protein sequence of rna2938

>rna2938-protein ID=rna2938-protein|Name=rna2938|organism=Nannochloropsis gaditana|type=polypeptide|length=84bp
MHERRPSKTCSNIFSNQEQSLGRARGRALSDGIFRVFGGGLDETDASLAG
KNNVKLVTFSLFFYRKTPVSSSFPFFYHSMSFPL
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mRNA from alignment at CM002460.1:314137..314458-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2938 ID=rna2938|Name=rna2938|organism=Nannochloropsis gaditana|type=mRNA|length=322bp|location=Sequence derived from alignment at CM002460.1:314137..314458- (Nannochloropsis gaditana)
ATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAATATTTTCTCTAAGTC
TAGCAAAATGTCCAAAGGCGAAGCTCTTTAATTGATTTGTTCTGTTCTTC
CCAAAAATACCAAGTCAAGAGCAAAGTCTTGGACGAGCTCGTGGACGAGC
TCTAAGTGACGGGATTTTCCGGGTATTCGGGGGAGGCTTAGACGAAACAG
ATGCCTCTCTTGCAGGAAAGAACAATGTGAAATTGGTTACATTCTCCTTG
TTCTTCTACAGGAAGACGCCGGTCTCTTCCTCCTTCCCTTTTTTTTATCA
CTCAATGAGCTTTCCTTTATAA
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Coding sequence (CDS) from alignment at CM002460.1:314137..314458-

>rna2938 ID=rna2938|Name=rna2938|organism=Nannochloropsis gaditana|type=CDS|length=510bp|location=Sequence derived from alignment at CM002460.1:314137..314458- (Nannochloropsis gaditana)
TCAAGAGCAAAGTCTTGGACGAGCTCGTGGACGAGCTCTAAGTGACGGGA
TTTTCCGGGTATTCGGGGGAGGCTTAGACGAAACAGATGCCTCTCTTGCA
GGAAAGAACAATGTGAAATTGGTTACATTCTCCTTGTTCTTCTACAGGAA
GACGCCGGTCTCTTCCTCCTTCCCTTTTTTTTATCACTCAATGAGCTTTC
CTTTATAAATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAATATTTTC
TCTAATCAAGAGCAAAGTCTTGGACGAGCTCGTGGACGAGCTCTAAGTGA
CGGGATTTTCCGGGTATTCGGGGGAGGCTTAGACGAAACAGATGCCTCTC
TTGCAGGAAAGAACAATGTGAAATTGGTTACATTCTCCTTGTTCTTCTAC
AGGAAGACGCCGGTCTCTTCCTCCTTCCCTTTTTTTTATCACTCAATGAG
CTTTCCTTTATAAATGCATGAGAGGCGGCCCAGCAAAACTTGTTCAAATA
TTTTCTCTAA
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Synonyms
Publications