EWM27719.1, cds2930 (CDS) Nannochloropsis gaditana

Overview
NameEWM27719.1
Unique Namecds2930
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:314412..314458 -
Alignment locationCM002460.1:314137..314344 -

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Properties
Property NameValue
Protein idEWM27719.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100034g43.6292.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:314412..314458 -
CM002460.1supercontigCM002460.1:314137..314344 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
BLAST of EWM27719.1 vs. NCBI_GenBank
Match: gi|585109992|gb|EWM27719.1| (hypothetical protein Naga_100034g43 [Nannochloropsis gaditana])

HSP 1 Score: 173.326 bits (438), Expect = 6.887e-55
Identity = 84/84 (100.00%), Postives = 84/84 (100.00%), Query Frame = 0
Query:    1 MHERRPSKTCSNIFSNQEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSSFPFFYHSMSFPL 84
            MHERRPSKTCSNIFSNQEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSSFPFFYHSMSFPL
Sbjct:    1 MHERRPSKTCSNIFSNQEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSSFPFFYHSMSFPL 84          
BLAST of EWM27719.1 vs. NCBI_GenBank
Match: gi|585110023|gb|EWM27750.1| (hypothetical protein Naga_100034g41 [Nannochloropsis gaditana])

HSP 1 Score: 154.066 bits (388), Expect = 5.878e-47
Identity = 80/88 (90.91%), Postives = 80/88 (90.91%), Query Frame = 0
Query:    1 MHERRPSKTCSNIFSN----QEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSSFPFFYHSMSFPL 84
            MHERRPSKTCSNIFS     QEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSS   FYHSMSFPL
Sbjct:   20 MHERRPSKTCSNIFSKSSEIQEQSLGRARGRALSDGIFRVFGGGLDETDASLAGKNNVKLVTFSLFFYRKTPVSSS--LFYHSMSFPL 105          
The following BLAST results are available for this feature:
BLAST of EWM27719.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585109992|gb|EWM27719.1|6.887e-55100.00hypothetical protein Naga_100034g43 [Nannochlorops... [more]
gi|585110023|gb|EWM27750.1|5.878e-4790.91hypothetical protein Naga_100034g41 [Nannochlorops... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2938rna2938Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications