rna2937, rna2937 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2937
Unique Name	rna2937
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	2063
Alignment location	CM002460.1:312021..314462 +

Link to JBrowse

Properties


Property Name	Value
Product	tetratricopeptide repeat family protein
Orig transcript id	gnl\|cribi\|Naga_100034g44.6298.mrna
Orig protein id	gnl\|cribi\|Naga_100034g44.6298
Gbkey	mRNA
Note	encoded by transcript variant 2; alternatively spliced

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:312021..314462 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100034g44	gene2817	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2937	rna2937-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27725.1	cds2929	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:312021..314462+
coding sequence from alignment at CM002460.1:312021..314462+

mRNA sequence

>rna2937 ID=rna2937|Name=rna2937|organism=Nannochloropsis gaditana|type=mRNA|length=2063bp
ACAAGGGTGCAAAAGCCCGCACGGCCCCCAGGCCTCCACACGCGAGCCCC
AAAGCTATCAAGCGCTTCACCATGGAGACAACTTTGATCTATATCTGTTG
AATGTTGATGAAAAACCGTCGGATTTTTAAAATCGGAATTGCCTCAATCT
GACGGGTGCGGCGATCTGAGCTTTTTCTCGTCGTGGGCTGGTTGATGTTG
ACGTTGTGGAGAGGAAATTTTGGTTCGCCCTACTTGTAAATTATGACAAC
ACCGCGCCTGTCGTCATCATACGTCATGTTCTTGACAACACAATCTAAGC
AGGTCATAAGCAGGCAGTTGAGCGTCTCAAAGGGTCCATGAGGAGTCTGA
TTTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCAGGGGACGCGGTTG
GTCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTGTCTTCGCCCTTAT
GATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAATTCACCACGGGCCA
GCCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCACAGATCATTTAGA
AAAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGGATAAGATGAGGAA
TCTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAAGATGCAGAGGCAA
ATAAGGGGGGAAAGATGGAGGCATTGGCTCTCTTTGAAAGCGCGGAAGCC
ACCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCCTAGAAGACGACGA
CCCTGCGCTCTTAACAACACGCAGCAATCTTGCCTCCATCCTGCAGCGCA
CAGGCCGAGGGGTTGAGGCGGAGGAGATGATGCGCACGACGATATCTCGG
GTGCAGGAGAAGGCGCGAGGGAAGGCGTCTCCCGAGGTGGCCACGGCGAT
GAACAACTTGGGCTACTTGCTCAAGGAGGAGGGACGACTGGGGGAGTCCC
GAGCGCTCTATAAAGAAGCCTTGCGGATTCGGAGAGCCTTGTATCCGAAA
GAACACCCCCTTGTCATCGTCTCTCTCAACAACCTTGCCGAGCTCTGTCT
GGTCACCCCGGGGCTTGAAGGCGAAGGAAGGGCGCTTCAGGACGAGATTT
TGAAACTTTTGAACCCGGTAAGGCGTGATGGCGATGGAAGCAAGAGCGTA
GGTATGATACACGAGGAAAAGCCAAATTGAGTACCTCATCCGAAAAGGAA
TGCCAGGGCCCAGTTCGATCTGCGCTGCTGTGCTTTGAACACGCACGTAT
CCTGCTGCTTTTGCCCTTCTTTTGGTTGTGGAGGAGGTATCAGGGCTTTG
TAGCAAAATTCTATTTTGAATTTTTCACATGCGGCATTTCACTCGTTTTT
CAGCTGTTCTGTCACGATAGGTTTTGAAATAGGAGAACGTTAAATGATTC
TGTCAACGTGATATAACGCCTCTTACTATTATAATTTGATCCGATGAAAT
GTACGACTGTTAAGACACATCCATGCAAACTCAAATCATCTGTTCTGTTT
GCCTCGTAAGAGCAGTTTGATGCGTAGTCCGAAAATTGAGTCTCTACGAC
TTGGTCGATAAGCCTCTGAACTCAAGGTTGAGAGAGCACTTCCGGACAAG
TCCATCTCTGGAACCATTTACTCCCTCCCTCCCTCCCTCTCTCCCTCCCT
CACCGCTTTTAACTGGAGTTGCTTCCGCGGTGCGCGTCTTTCCATGCGTA
TCCAGTGTCAAGTAGTTTAACGAATGAAGTTCGTGGCTTATAAAGGAAAG
CTCATTGAGTGATAAAAAAAAGGGAAGGAGGAAGAGACCGGCGTCTTCCT
GTAGAAGAACAAGGAGAATGTAACCAATTTCACATTGTTCTTTCCTGCAA
GAGAGGCATCTGTTTCGTCTAAGCCTCCCCCGAATACCCGGAAAATCCCG
TCACTTAGAGCTCGTCCACGAGCTCGTCCAAGACTTTGCTCTTGACTTGG
TATTTTTGGGAAGAACAGAACAAATCAATTAAAGAGCTTCGCCTTTGGAC
ATTTTGCTAGACTTAGAGAAAATATTTGAACAAGTTTTGCTGGGCCGCCT
CTCATGCATCAGA

protein sequence of rna2937

>rna2937-protein ID=rna2937-protein|Name=rna2937|organism=Nannochloropsis gaditana|type=polypeptide|length=381bp
MRSLICSLLKGHNTQCQGTRLVASGSLWSTRMPVFALMIGSCTSASILLN
SPRASHVQHRLFLSSCHRSFRKETECEADLEDVDKMRNLDVRQPSMETEK
DVGLALREVQDLYKEGKYTEALQVSLGMKDWLERELGEDHPVYASCLNNV
ALMHKMTNELEDAVHYYAMALDTYKRSVGVNHRSYATALNNLGLVFLMQA
QQAEANKGGKMEALALFESAEATLREVLVIRAQLLEDDDPALLTTRSNLA
SILQRTGRGVEAEEMMRTTISRVQEKARGKASPEVATAMNNLGYLLKEEG
RLGESRALYKEALRIRRALYPKEHPLVIVSLNNLAELCLVTPGLEGEGRA
LQDEILKLLNPVRRDGDGSKSVGMIHEEKPN

mRNA from alignment at CM002460.1:312021..314462+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2937 ID=rna2937|Name=rna2937|organism=Nannochloropsis gaditana|type=mRNA|length=2442bp|location=Sequence derived from alignment at CM002460.1:312021..314462+ (Nannochloropsis gaditana)
TGCAAAAGCCCGCACGGCCCCCAGGCCTCCACACGCGAGCCCCAAAGCTA
TCAAGCGCTTCACCATGGAGACAACTTTGATCTATATCTGTTGAATGTTG
ATGAAAAACCGTCGGATTTTTAAAATCGGAATTGCCTCAATCTGACGGGT
GCGGCGATCTGAGCTTTTTCTCGTCGTGGGCTGGTTGATGTTGACGTTGT
GGAGAGGAAATTTTGGTTCGCCCTACTTGTAAATTATGACAACACCGCGC
CTGTCGTCATCATACGTCATGTTCTTGACAACACAATCTAAGCAGGTCAT
AAGCAGGCAGTTGAGCGTCTCAAAGGGTCCATGAGGAGTCTGATTTGTAG
CCTCCTCAAGGTGGGTGGGAGTCCTCTTCAGGGGTTCGGTtggccctccc
ctcatcaCATTCAATCCACCATCCACCTATTTCCGTCCTCCAGGGGCACA
ATACGCAATGCCAGGGGACGCGGTTGGTCGCTTCTGGAAGTTTGTGGTCG
ACGAGAATGCCTGTCTTCGCCCTTATGATTGGTTCGTGTACGTCAGCCTC
CATACTGCTCAATTCACCACGGGCCAGCCACGTCCAACACCGCCTTTTTC
TCTCAAGCTGTCACAGATCATTTAGAAAAGAGACAGAGTGTGAGGCAGAT
TTGGAAGATGTGGATAAGATGAGGAATCTCGATGTTCGACAGCCCAGTAT
GGAGACGGAAAAAGATGTAGGTCTGGCTTTAAGGGAGGTTCAGGATTTGT
ACAAAGAAGGTAAATACACCGAGGCCCTCCAGGTGTCTTTGGGTATGAAA
GATTGGCTAGAGCGGGAACTGGGTGAGGATCATCCTGTTTACGCGTCTTG
TTTAAATAATGTTGCCTTGATGCATAAGATGACGAATGAattggaggacg
cggtccaTTACTATGCCATGGCGCTTGACACGTACAAGCGGAGTGTGGGC
GTCAATCATCGATCATATGCCACCGCGCTAAATAATTTAGGGCTGGTTTT
CTTGATGCAAGCTCAGCAGGCAGAGGCAAataaggggggaaagatggAGG
CATTGGCTCTCTTTGAAAGCGCGGAAGCCACCTTGCGCGAAGTTCTCGTC
ATCCGCGCTCAGCTCCTAGAAGACGACGACCCTGCGCTCTTAACAACACG
CAGCAATCTTGCCTCCATCCTGCAGCGCACAGGCCGAGGGgttgaggcgg
aggagatgatgcGCACGACGATATCTCGggtgcaggagaaggcgcgAGGG
AAGGCGTCTCCCGAGGTGGCCACGGCGATGAACAACTTGGGCTACttgct
caaggaggagggacgactGGGGGAGTCCCGAGCGCTCTATAAAGAAGCCT
TGCGGATTCGGAGAGCCTTGTATCCGAAAGAACACCCCCTTGTCATCGTC
TCTCTCAACAACCTTGCCGAGCTCTGTCTGGTCACCCCGGGGCttgaagg
cgaaggaagggcgcTTCAGGACGAGATTTTGAAACTTTTGAACCCGGTAA
GGCGTGATGGCGATGGAAGCAAGAGCGTAGGTATGATACACGAGGAAAAG
CCAAATTGAGTACCTCATCCGAAAAGGAATGCCAGGGCCCAGTTCGATCT
GCGCTGCTGTGCTTTGAACACGCACGTATCCTGCTGCTTTTGCCCTTCTT
TTGGTTGTGGAGGAGGTATCAGGGCTTTGTAGCAAAATTCTATTTTGAAT
TTTTCACATGCGGCATTTCACTCGTTTTTCAGCTGTTCTGTCACGATAGG
TTTTGAAATAGGAGAACGTTAAATGATTCTGTCAACGTGATATAACGCCT
CTTACTATTATAATTTGATCCGATGAAATGTACGACTGTTAAGACACATC
CATGCAAACTCAAATCATCTGTTCTGTTTGCCTCGTAAGAGCAGTTTGAT
GCGTAGTCCGAAAATTGAGTCTCTACGACTTGGTCGATAAGCCTCTGAAC
TCAAGGTTGAGAGAGCACTTCCGGACAAGTCCATCTCTGGAACCAtttac
tccctccctccctccctctctccctccctcaccgctTTTAACTGGAGTTG
CTTCCGCGGTGCGCGTCTTTCCATGCGTATCCAGTGTCAAGTAGTTTAAC
GAATGAAGTTCGTGGCTTATAAAGGAAAGCTCATTGAGTGAtaaaaaaaa
gggaaggaggaagagaccgGCGTCTTCCTGtagaagaacaaggagaatGT
AACCAATTTCACATTGTTCTTTCCTGCAAGAGAGGCATCTGTTTCGTCTA
AGCCTCCCCCGAATACCCGGAAAATCCCGTCACTTAGAGCTCGTCCACGA
GCTCGTCCAAGACTTTGCTCTTGACTTGGTATTTTTGGGAAGAACAGAAC
AAATCAATTAAAGAGCTTCGCCTTTGGACATTTTGCTAGACTTAGAGAAA
ATATTTGAACAAGTTTTGCTGGGCCGCCTCTCATGCATCAGA

Coding sequence (CDS) from alignment at CM002460.1:312021..314462+

>rna2937 ID=rna2937|Name=rna2937|organism=Nannochloropsis gaditana|type=CDS|length=2292bp|location=Sequence derived from alignment at CM002460.1:312021..314462+ (Nannochloropsis gaditana)
ATGAGGAGTCTGATTTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCA
GGGGACGCGGTTGGTCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTG
TCTTCGCCCTTATGATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAAT
TCACCACGGGCCAGCCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCA
CAGATCATTTAGAAAAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGG
ATAAGATGAGGAATCTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAA
GATGTAGGTCTGGCTTTAAGGGAGGTTCAGGATTTGTACAAAGAAGGTAA
ATACACCGAGGCCCTCCAGGTGTCTTTGGGTATGAAAGATTGGCTAGAGC
GGGAACTGGGTGAGGATCATCCTGTTTACGCGTCTTGTTTAAATAATGTT
GCCTTGATGCATAAGATGACGAATGAattggaggacgcggtccaTTACTA
TGCCATGGCGCTTGACACGTACAAGCGGAGTGTGGGCGTCAATCATCGAT
CATATGCCACCGCGCTAAATAATTTAGGGCTGGTTTTCTTGATGCAAGCT
CAGCAGGCAGAGGCAAataaggggggaaagatggAGGCATTGGCTCTCTT
TGAAAGCGCGGAAGCCACCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGC
TCCTAGAAGACGACGACCCTGCGCTCTTAACAACACGCAGCAATCTTGCC
TCCATCCTGCAGCGCACAGGCCGAGGGgttgaggcggaggagatgatgcG
CACGACGATATCTCGggtgcaggagaaggcgcgAGGGAAGGCGTCTCCCG
AGGTGGCCACGGCGATGAACAACTTGGGCTACttgctcaaggaggaggga
cgactGGGGGAGTCCCGAGCGCTCTATAAAGAAGCCTTGCGGATTCGGAG
AGCCTTGTATCCGAAAGAACACCCCCTTGTCATCGTCTCTCTCAACAACC
TTGCCGAGCTCTGTCTGGTCACCCCGGGGCttgaaggcgaaggaagggcg
cTTCAGGACGAGATTTTGAAACTTTTGAACCCGGTAAGGCGTGATGGCGA
TGGAAGCAAGAGCGTAGGTATGATACACGAGGAAAAGCCAAATTGAATGA
GGAGTCTGATTTGTAGCCTCCTCAAGGGGCACAATACGCAATGCCAGGGG
ACGCGGTTGGTCGCTTCTGGAAGTTTGTGGTCGACGAGAATGCCTGTCTT
CGCCCTTATGATTGGTTCGTGTACGTCAGCCTCCATACTGCTCAATTCAC
CACGGGCCAGCCACGTCCAACACCGCCTTTTTCTCTCAAGCTGTCACAGA
TCATTTAGAAAAGAGACAGAGTGTGAGGCAGATTTGGAAGATGTGGATAA
GATGAGGAATCTCGATGTTCGACAGCCCAGTATGGAGACGGAAAAAGATG
TAGGTCTGGCTTTAAGGGAGGTTCAGGATTTGTACAAAGAAGGTAAATAC
ACCGAGGCCCTCCAGGTGTCTTTGGGTATGAAAGATTGGCTAGAGCGGGA
ACTGGGTGAGGATCATCCTGTTTACGCGTCTTGTTTAAATAATGTTGCCT
TGATGCATAAGATGACGAATGAattggaggacgcggtccaTTACTATGCC
ATGGCGCTTGACACGTACAAGCGGAGTGTGGGCGTCAATCATCGATCATA
TGCCACCGCGCTAAATAATTTAGGGCTGGTTTTCTTGATGCAAGCTCAGC
AGGCAGAGGCAAataaggggggaaagatggAGGCATTGGCTCTCTTTGAA
AGCGCGGAAGCCACCTTGCGCGAAGTTCTCGTCATCCGCGCTCAGCTCCT
AGAAGACGACGACCCTGCGCTCTTAACAACACGCAGCAATCTTGCCTCCA
TCCTGCAGCGCACAGGCCGAGGGgttgaggcggaggagatgatgcGCACG
ACGATATCTCGggtgcaggagaaggcgcgAGGGAAGGCGTCTCCCGAGGT
GGCCACGGCGATGAACAACTTGGGCTACttgctcaaggaggagggacgac
tGGGGGAGTCCCGAGCGCTCTATAAAGAAGCCTTGCGGATTCGGAGAGCC
TTGTATCCGAAAGAACACCCCCTTGTCATCGTCTCTCTCAACAACCTTGC
CGAGCTCTGTCTGGTCACCCCGGGGCttgaaggcgaaggaagggcgcTTC
AGGACGAGATTTTGAAACTTTTGAACCCGGTAAGGCGTGATGGCGATGGA
AGCAAGAGCGTAGGTATGATACACGAGGAAAAGCCAAATTGA

Synonyms

Publications