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Properties
| Property Name | Value |
|---|
| Product | splicing factor 3b subunit 2 |
| Orig transcript id | gnl|cribi|Naga_100248g6.5005.mrna |
| Orig protein id | gnl|cribi|Naga_100248g6.5005 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:284480..287106 + |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2925 ID=rna2925|Name=rna2925|organism=Nannochloropsis gaditana|type=mRNA|length=1921bp
AGCTCTCTTTGACAATGGCAAGGTGGTATCCTCCCTCGACATCGACGACA
AGGCCCCAAGGACGCAGGCGCGTGAAGCTGACGAAAGCCGCCTGTCGTGG
TGATCGATCACCAGACTTCCCCTATCTCCCAGATCAGCGGTCCTCGACTC
ACGCAACCACTTTTCGTACAACTCTAGCTGACTGTGACCACCGACGACTC
AAGTCATAAGATGAGGAGTTGGCAGGGTATCTCTTCTATCAACATGTACT
CTCCTCTTTCTGGTGTGCGACATTGAGACCATCTTATCTTTCCCTATACT
CCGTCTACCGCTACAACATGACTAGGTTCTCCCCACCCGGTGCCCTTTCC
TCATTGCCCCAGAAAACTAGACCGTTGACGCCGTGACAATGGCCAACAGT
TCTCCTAATCCGACAGCAGCTTTGAACGGTCTCCTTGTCTCCGTCGCGGA
CCCTCTGAAGCACAACGAAGGTGTGCAAGCCTGGATTGGCTATACCGTTG
TCACTCAGGCTGACGACAGCCGTAGCGAGTTCCAAGCCCCCCGCACAAGT
GTCCTCCGCCGCTACTCTGACTTCAACTGGTTGCATATGAAGTTGAGCCA
CTCCTTTCCTGGATGTATCCTCCCCCCTCTTCCTGAAAAGGCCATGGTCG
GTCGCTTCGAAGCCCCCTTCGTGGAAGCGCGCCGCCGCGCCCTGGAGCGC
TACTTGTTGCGCGTGGTGAAGCACCCTGAGTTGGGAAAAAGCAGTGACCT
GGTCCTATTTTTGCAGGAAAATGAGGCCAAACTCGAGCACGCCAAGGCGG
AATGGCGGCGTGAGCAGATGAGGCAACCCAAGGTGCTGCGCTTGGTCAAG
CAAGCCTTCGCCCACATGGAGCACTCCCTCTCTAGTGCCTCCACCGGAAA
GGTCGAGGTTCCCCGGAGCGATTCCGACGCCGTCCTGGACGACATTGCGA
CCTGCGTGCACGTCTTGGAGGTGCACTTCCACAGCGCCGCGCGCGAGGCC
TCTACCTGGGTCCGGAGGGAGAAGGAGGCAGCCGACGGGTGCTTCCAGCT
CGGCCTCGCGCTCACCCTGCTGGGCCAGAACGAGGCTGGAGGGTTGGGGG
AAGTAATTAGGGGCACGGGGCATGCTTTGGACGCGGCGTCGGTGCTGGCA
ACCGGGGCTGTGGAAAGCTCTGGCTTGCTCTTGGAGGGGCCACTGGTGGA
GTGGAGCCGGGGGCTGGGCTCCGCCAAACTCGCTTTGCTTCGACGCATGG
AGGCTCGGAGAGCCTACCACGAGGCCTTGGTGGAGGTGGCGGTACGCGCG
CAGGGCAAAGAGAAGTGGGTAGGTATGATTGGAAAGGAGGACAAGCTGCA
GGCGGCCGAGGGGGCGTGGGGAAAGGCGGTGGCGGCGGCGGAGGCGAAGA
GGAAGGAGTTTGAGACCGTGTCGGGGAGGATTGTGCGGGATTGGGGGGCG
TTTCGGGAGGAAAAGGCCGAGGAACTGCGAAAAGCGGCGGTGGCATTCCT
GGAGGCGCAGGTGGGACGACACGAGAAGATGCGGACGGCCTGGGCGGGGG
CCCTCTCGAAAGTTAAGGAGGTGGATCCCAAGCAGGGCCTGAATCAGGAG
GCCACGACAGGGGGAGGGGAGAAGGGGGGGGCGAGCCGGGACGAGGGGGG
AGCTGGTAGGGGGGCGGGGGCGGGCGGAGGGAAGGGGGAAGAGGAGATGA
TAGCAGAGTGAATGGAGAGTCTGGGCTGAAGGTTCCCGTTTCGGGCTTGT
AAAGATAGCGAGAATGAAGCGCCACGCCAGTATAGAGGCAAATGCGATTG
ACTGGAAAGGAGCGTGTACAAGACATGGGAGGGAGGAGGAGGAGGCCTGT
AGACAACGCTGAAACGAATGCCTTGAGGGAGTGACAAGCAGGGCGATGCC
GGGCTAGAGTGTTGGGACTTT back to topprotein sequence of rna2925 >rna2925-protein ID=rna2925-protein|Name=rna2925|organism=Nannochloropsis gaditana|type=polypeptide|length=600bp
MSMTISWKMVPPKSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGS
VPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAE
ELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQR
KKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHW
CHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMR
ERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNH
TPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPE
GASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEV
NRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSS
VVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEQREGGGGAGGFFA
GDKKYVMEGGGGGGRAMGGAGRVGARGASDVSIALNPDELADQLGDEEAL
KERYEQEVEARQAAKRLADDDSDDEQGGGRKKRKGEKGWSGGKKGKEFKF back to topmRNA from alignment at CM002460.1:284480..287106+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2925 ID=rna2925|Name=rna2925|organism=Nannochloropsis gaditana|type=mRNA|length=2627bp|location=Sequence derived from alignment at CM002460.1:284480..287106+ (Nannochloropsis gaditana)
AGTCGTCGGTGGTCACAGTCAGCTAGAGTTGTACGAAAAGTGGTTGCGTG
AGTCGAGGACCGCTGATCTGGGAGATAGGGGAAGTCTGGTGATCGATCAC
CACGACAGGCGGCTTTCGTCAGCTTCACGCGCCTGCGTCCTTGGGGCCTT
GTCGTCGATGTCGAGGGAGGATACCACCTTGCCATTGTCAAAGAGAGCTT
GGAAAGGCATATTTGCGAGTGTGGATGACACATGAAGCCGCTAGGCGCCT
CTGTCAAGCCCGTGGTCCTGAGCCCGAGCACTcgtctcctgcttcttcca
tgGAGATATCGCACCCCTGACTTTTCCCCGTattcccgcctccccatctt
ctCACTTACAAGGCAAAGCAACTTCTCATCTAAGTTGGAAGAGTATAGGC
GTGCCTAGTGTACCTTTTGGGAGGAGTGTTGCGATTGTCTTGAACAGGAA
AGCAGGCGCGTCACGGGGAgccgaggaaggaaacaaagCACGAAAAAGTC
TTTGAGGTGTTCGCGGCCCAGGCAGCATGTCGGATAATGAGCATGACCAT
AAGCTGGAAAATGGTCCCGCCAAAATCAAcgggaaggcggcggggaagat
CTCGAAAAATcaaagaaggaggtgatGCTAACTGCCTGtcattccctttc
cctcccactgGACGATCGCGTCGCTTCTCACACGcatattttcctcccct
cctcggacattcagagagaagaagaaggctgcCAAGAGAATGGCGCATGa
gtccggggggggggcatacCAACGGCAGCGTTCCCACTGCCTCcggtgct
cctcccccggcgccaGCGCCCGACGTCGAAATCCAATATGTGTCGGCCGA
CCTGGAGAGCGAGTTGGCGGGTGATGACCCGGCGCTGGAAGAATTCAGGG
AGATCTTCAAGAAGTTTTccacggcggaggagctctGTGGCACCAGCGTG
GACGATGAAAAAGGGgttgacgagggaggagagggtgcgggGGAGAAAGT
TTCAGGCGGtgagggccgggggggggaggaggacgaggaggaggagaaaa
ctGGGTCGCGTCTATCTAGAAAACAACGGAAGAAGCTGAACCGACTGTCG
GTGGCGGAGCTCAAGCAGCTGGTAGCCCGACccgacgtggtggaggcgca
cGACGTGACCTCCCAGGACCCGCAGCTCCTCGTGCAGATGAAGGCCTACC
GCAACTCGGTGCCGGTGCCCAGACATTGGTGCCACAAGCGGAAGTACCTG
ACGGGGAAGCGCGGCATCGAGAAGGCGCCCTTCGAGCTCCCCGACTTCGT
CAAGGCTACCGGGATCCAGAAGCAgcgggaggcgatggaggagaagctgc
gcCTGCAGACGGCCCGCCAGAAAATGCGCGAACGTGTGAACCCGAAGATG
GGGCGGATGGACATCGACTACGCCGTGCTTGAGGACGCCTTTCTCCGCTA
CCAGACCAAGCCCCCCCTAACGCCGCACGGCGAGCTCTACTACGAAGGCA
AGGAGTTCGAGGCGCGCACCCGGAACCACACCCCAGGCGTGCTCTcggag
gagctggtcaaCGCACTtggcatcccccccctctacccgcctccttggct
CATGAACATGCAGCGGTacggcccccctcccgcctatCCTGCGCTGCGGA
TCCCGGGCTTGAACGCTCCTTTGCCCGAAGGGGCGAGCTTCGGAATGCAC
CCGGGAGGTTGGGGGAAGCCGCCCGTGGATGAGTACGGGAGGCCTTTGTA
CGGGGATGTGTTTGGAGtgctgggagggggcgacgggggggcgctggggg
gggagggaggggcgggcgctgAGGAGGTGAACAGGAGGCATtgggggggc
gtggaagtggaggaggaggaggtagaagaggaagaagaggaagaagagga
agaagaggagggggaggagagaaggaaggatgaaagTGGGCTGGAGACCC
CCGTGACAGAGGCGACGGGGCTATCGTCGGTGGTGTCGGGCCTGGAGACC
ccgggggaggcgatgggtATGGAGCTGCGGAAGCAGGCGGGGCTGGAGGC
GCCGAGCGAGGAACCCAAGGAGCTGTACAAGGTGCTtgagcagagggagg
gggggggaggtgcggggGGATTTTTCGCGGGAGACAAGAAATATgtgatg
gagggcggggggggcggcgggcgagcgatgggaggggcggggcgtgTAGG
AGCGCGTGGAGCTAGCGACGTGTCGATTGCCCTCAATCCGGACGAGCTAG
CCGATCAGttgggggacgaggaggcgttgAAGGAAAGGTatgagcaggag
gtggaggcccggCAAGCAGCCAAGAGGCTGGCGGACGACGACAGCGACGa
cgagcaggggggggggcgcaagAAGCgcaaaggagagaaagggtggagtg
gagggaagaaggggaaagaattCAAGTTCTAGGGAGtcggaggggccggg
gggccGGTGGATGGTGCATGAATCTTGATttccaggggggggggagctgg
aggcaaggagaggagggaaaaggggctgCCGTGCCCTAGGGGTTGACCAG
TGGGAAGACGCTGCGGTCGGTGGGTGTGCTATGACACGTTTGGTTTGGAT
CAAACGAAATAAAAGAGCTTGACGCGC back to topCoding sequence (CDS) from alignment at CM002460.1:284480..287106+ >rna2925 ID=rna2925|Name=rna2925|organism=Nannochloropsis gaditana|type=CDS|length=3606bp|location=Sequence derived from alignment at CM002460.1:284480..287106+ (Nannochloropsis gaditana)
ATGAGCATGACCATAAGCTGGAAAATGGTCCCGCCAAAATCAAcgggaag
gcggcggggaagatCTCGAAAAATcaaagaaggagagagaagaagaaggc
tgcCAAGAGAATGGCGCATGagtccggggggggggcatacCAACGGCAGC
GTTCCCACTGCCTCcggtgctcctcccccggcgccaGCGCCCGACGTCGA
AATCCAATATGTGTCGGCCGACCTGGAGAGCGAGTTGGCGGGTGATGACC
CGGCGCTGGAAGAATTCAGGGAGATCTTCAAGAAGTTTTccacggcggag
gagctctGTGGCACCAGCGTGGACGATGAAAAAGGGgttgacgagggagg
agagggtgcgggGGAGAAAGTTTCAGGCGGtgagggccgggggggggagg
aggacgaggaggaggagaaaactGGGTCGCGTCTATCTAGAAAACAACGG
AAGAAGCTGAACCGACTGTCGGTGGCGGAGCTCAAGCAGCTGGTAGCCCG
ACccgacgtggtggaggcgcacGACGTGACCTCCCAGGACCCGCAGCTCC
TCGTGCAGATGAAGGCCTACCGCAACTCGGTGCCGGTGCCCAGACATTGG
TGCCACAAGCGGAAGTACCTGACGGGGAAGCGCGGCATCGAGAAGGCGCC
CTTCGAGCTCCCCGACTTCGTCAAGGCTACCGGGATCCAGAAGCAgcggg
aggcgatggaggagaagctgcgcCTGCAGACGGCCCGCCAGAAAATGCGC
GAACGTGTGAACCCGAAGATGGGGCGGATGGACATCGACTACGCCGTGCT
TGAGGACGCCTTTCTCCGCTACCAGACCAAGCCCCCCCTAACGCCGCACG
GCGAGCTCTACTACGAAGGCAAGGAGTTCGAGGCGCGCACCCGGAACCAC
ACCCCAGGCGTGCTCTcggaggagctggtcaaCGCACTtggcatcccccc
cctctacccgcctccttggctCATGAACATGCAGCGGTacggcccccctc
ccgcctatCCTGCGCTGCGGATCCCGGGCTTGAACGCTCCTTTGCCCGAA
GGGGCGAGCTTCGGAATGCACCCGGGAGGTTGGGGGAAGCCGCCCGTGGA
TGAGTACGGGAGGCCTTTGTACGGGGATGTGTTTGGAGtgctgggagggg
gcgacgggggggcgctggggggggagggaggggcgggcgctgAGGAGGTG
AACAGGAGGCATtgggggggcgtggaagtggaggaggaggaggtagaaga
ggaagaagaggaagaagaggaagaagaggagggggaggagagaaggaagg
atgaaagTGGGCTGGAGACCCCCGTGACAGAGGCGACGGGGCTATCGTCG
GTGGTGTCGGGCCTGGAGACCccgggggaggcgatgggtATGGAGCTGCG
GAAGCAGGCGGGGCTGGAGGCGCCGAGCGAGGAACCCAAGGAGCTGTACA
AGGTGCTtgagcagagggagggggggggaggtgcggggGGATTTTTCGCG
GGAGACAAGAAATATgtgatggagggcggggggggcggcgggcgagcgat
gggaggggcggggcgtgTAGGAGCGCGTGGAGCTAGCGACGTGTCGATTG
CCCTCAATCCGGACGAGCTAGCCGATCAGttgggggacgaggaggcgttg
AAGGAAAGGTatgagcaggaggtggaggcccggCAAGCAGCCAAGAGGCT
GGCGGACGACGACAGCGACGacgagcaggggggggggcgcaagAAGCgca
aaggagagaaagggtggagtggagggaagaaggggaaagaattCAAGTTC
TAGATGAGCATGACCATAAGCTGGAAAATGGTCCCGCCAAAATCAAcggg
aaggcggcggggaagatCTCGAAAAATcaaagaaggagagagaagaagaa
ggctgcCAAGAGAATGGCGCATGagtccggggggggggcatacCAACGGC
AGCGTTCCCACTGCCTCcggtgctcctcccccggcgccaGCGCCCGACGT
CGAAATCCAATATGTGTCGGCCGACCTGGAGAGCGAGTTGGCGGGTGATG
ACCCGGCGCTGGAAGAATTCAGGGAGATCTTCAAGAAGTTTTccacggcg
gaggagctctGTGGCACCAGCGTGGACGATGAAAAAGGGgttgacgaggg
aggagagggtgcgggGGAGAAAGTTTCAGGCGGtgagggccggggggggg
aggaggacgaggaggaggagaaaactGGGTCGCGTCTATCTAGAAAACAA
CGGAAGAAGCTGAACCGACTGTCGGTGGCGGAGCTCAAGCAGCTGGTAGC
CCGACccgacgtggtggaggcgcacGACGTGACCTCCCAGGACCCGCAGC
TCCTCGTGCAGATGAAGGCCTACCGCAACTCGGTGCCGGTGCCCAGACAT
TGGTGCCACAAGCGGAAGTACCTGACGGGGAAGCGCGGCATCGAGAAGGC
GCCCTTCGAGCTCCCCGACTTCGTCAAGGCTACCGGGATCCAGAAGCAgc
gggaggcgatggaggagaagctgcgcCTGCAGACGGCCCGCCAGAAAATG
CGCGAACGTGTGAACCCGAAGATGGGGCGGATGGACATCGACTACGCCGT
GCTTGAGGACGCCTTTCTCCGCTACCAGACCAAGCCCCCCCTAACGCCGC
ACGGCGAGCTCTACTACGAAGGCAAGGAGTTCGAGGCGCGCACCCGGAAC
CACACCCCAGGCGTGCTCTcggaggagctggtcaaCGCACTtggcatccc
ccccctctacccgcctccttggctCATGAACATGCAGCGGTacggccccc
ctcccgcctatCCTGCGCTGCGGATCCCGGGCTTGAACGCTCCTTTGCCC
GAAGGGGCGAGCTTCGGAATGCACCCGGGAGGTTGGGGGAAGCCGCCCGT
GGATGAGTACGGGAGGCCTTTGTACGGGGATGTGTTTGGAGtgctgggag
ggggcgacgggggggcgctggggggggagggaggggcgggcgctgAGGAG
GTGAACAGGAGGCATtgggggggcgtggaagtggaggaggaggaggtaga
agaggaagaagaggaagaagaggaagaagaggagggggaggagagaagga
aggatgaaagTGGGCTGGAGACCCCCGTGACAGAGGCGACGGGGCTATCG
TCGGTGGTGTCGGGCCTGGAGACCccgggggaggcgatgggtATGGAGCT
GCGGAAGCAGGCGGGGCTGGAGGCGCCGAGCGAGGAACCCAAGGAGCTGT
ACAAGGTGCTtgagcagagggagggggggggaggtgcggggGGATTTTTC
GCGGGAGACAAGAAATATgtgatggagggcggggggggcggcgggcgagc
gatgggaggggcggggcgtgTAGGAGCGCGTGGAGCTAGCGACGTGTCGA
TTGCCCTCAATCCGGACGAGCTAGCCGATCAGttgggggacgaggaggcg
ttgAAGGAAAGGTatgagcaggaggtggaggcccggCAAGCAGCCAAGAG
GCTGGCGGACGACGACAGCGACGacgagcaggggggggggcgcaagAAGC
gcaaaggagagaaagggtggagtggagggaagaaggggaaagaattCAAG
TTCTAG back to top
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