EWM27761.1, cds2917 (CDS) Nannochloropsis gaditana

Overview
NameEWM27761.1
Unique Namecds2917
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:285016..285100 +
Alignment locationCM002460.1:285194..286911 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27761.1
Productsplicing factor 3b subunit 2
Orig transcript idgnl|cribi|Naga_100248g6.5005.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:285016..285100 +
CM002460.1supercontigCM002460.1:285194..286911 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
Vocabulary: INTERPRO
TermDefinition
IPR007180DUF382
IPR006568PSP
Homology
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|585110037|gb|EWM27761.1| (splicing factor 3b subunit 2 [Nannochloropsis gaditana])

HSP 1 Score: 1188.71 bits (3074), Expect = 0.000e+0
Identity = 600/600 (100.00%), Postives = 600/600 (100.00%), Query Frame = 0
Query:    1 MSMTISWKMVPPKSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARGASDVSIALNPDELADQLGDEEALKERYEQEVEARQAAKRLADDDSDDEQGGGRKKRKGEKGWSGGKKGKEFKF 600
            MSMTISWKMVPPKSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARGASDVSIALNPDELADQLGDEEALKERYEQEVEARQAAKRLADDDSDDEQGGGRKKRKGEKGWSGGKKGKEFKF
Sbjct:    1 MSMTISWKMVPPKSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARGASDVSIALNPDELADQLGDEEALKERYEQEVEARQAAKRLADDDSDDEQGGGRKKRKGEKGWSGGKKGKEFKF 600          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|553186930|ref|XP_005854519.1| (splicing factor 3B subunit 2 [Nannochloropsis gaditana CCMP526] >gi|422294546|gb|EKU21846.1| splicing factor 3B subunit 2 [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 802.742 bits (2072), Expect = 0.000e+0
Identity = 408/443 (92.10%), Postives = 408/443 (92.10%), Query Frame = 0
Query:   43 GGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKV 485
            GGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDE                                  RHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYK 
Sbjct:    6 GGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDE----------------------------------RHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAPSEEPKELYKT 414          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|553177216|ref|XP_005852444.1| (splicing factor 3B subunit 2, partial [Nannochloropsis gaditana CCMP526] >gi|422296090|gb|EKU23389.1| splicing factor 3B subunit 2, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 648.662 bits (1672), Expect = 0.000e+0
Identity = 341/368 (92.66%), Postives = 348/368 (94.57%), Query Frame = 0
Query:   11 PPKSTGRRRGRSRKIKEGERRRRLPREWRMSPGGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVF 378
            P K  G+  G+  K +    +++  +      GGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVF
Sbjct:   14 PAKINGKAAGKISKNQRRREKKKAAKRMAHESGGGHTNGSVPTASGAPPPAPAPDVEIQYVSADLESELAGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVF 381          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|298707650|emb|CBJ25967.1| (proline-rich spliceosome-associated (PSP) family protein [Ectocarpus siliculosus])

HSP 1 Score: 443.351 bits (1139), Expect = 8.218e-145
Identity = 276/566 (48.76%), Postives = 358/566 (63.25%), Query Frame = 0
Query:   23 RKIKEGERRRRLPREWRMSPGGG--------HTNGSVPTASGAPPPAP---APDVEIQYVSADLESELAG---DDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGS-----------RLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQAGLEAP-----SEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARG-ASDVSIALNPDELADQLGDEEALKERYEQE 557
            RK+ + E+RR+  ++ +     G         +NG V  AS  PPPAP   A DV+++YV AD  S L G   D  +LEEF++IF++F+   +    +  D    +     A  + +    +           G            RLSRK RK  +RLSVAELKQLV RPDVVEAHDVT+ DP++LV +K+YRN+VPVPRHWC KRKYL GKRGIEK PFELP+F+  TGI K R A+EE    + A+QK RERV PKMG++DIDY VL DAF ++QTKPPLT  G+LYYEGKEFEA+ + H PG +S +L  ALGI    PPPWL+NMQRYGPP +YP LRIPGLNAP+P GA +G     WGKPPVD  G PLYGDVF          L  + G   EE+++ HWG +    E  ++++EEEEEEEE EE  +++ G ETP+ E  G+SS VSGLETP     M+LRK+AG++ P     S  P+ELYKV++ R+   GAG  F GD+KYV+ G  GGG    G G   +     DV ++LNPDE+ +QL DEE L+E++E++
Sbjct:   69 RKLTKNEKRRQKNKQRKAQAVEGAVVEKSMAESNG-VAVASWPPPPAPKDEASDVQVEYV-ADNTSVLDGAEMDAASLEEFKQIFERFTKVADEASGAAADAAEAEAEAAAAAAEAAKAASKKAAAAAARGSDGEEEGSDEEGAGPRLSRKARKLKSRLSVAELKQLVQRPDVVEAHDVTAADPRMLVFLKSYRNTVPVPRHWCQKRKYLQGKRGIEKTPFELPEFIAMTGIDKIRAAIEEADSQKKAKQKQRERVAPKMGKIDIDYQVLHDAFFKHQTKPPLTNPGDLYYEGKEFEAKNQEHKPGHVSSDLREALGIGEDDPPPWLINMQRYGPPLSYPHLRIPGLNAPIPAGARYGFGSSEWGKPPVDSKGNPLYGDVFN---------LAAKDGDDVEEMDKSHWGDL---AESDDDDDEEEEEEEEEEEEEEEDGGAETPMFEGGGVSS-VSGLETPDTM--MDLRKRAGVDTPDTTGLSAVPQELYKVVQSRDSAVGAGALFGGDRKYVLPGSKGGGGGAAGLGGDASEAPPRDVQVSLNPDEVDEQLNDEEGLREKFEEQ 617          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|635360312|emb|CCI50321.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 436.802 bits (1122), Expect = 6.734e-144
Identity = 249/495 (50.30%), Postives = 313/495 (63.23%), Query Frame = 0
Query:   52 PTASGAPPPAPAPDVEIQYVSADLESEL---AGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELP--DFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEV--------EEEEEEEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRV---GARGAS 529
            P A   P  +P   ++++YVS DL+ EL   + DDP+  EF  +F KFS+AEEL GT  ++E   DE    A E +     + G  D + E+  +  SRKQRKK+ RLSVAELKQLVA PDVVEAHDVT+ DP+ LV +K+YRN++PVPRHWCHKRKYL GKRGIEK PF LP  +F+  TGI   R    E+   +T++QK RER+ PK+GR+DIDY VL DAF RYQTKP L+  G+LY+EGKEFE + ++  PG LS EL NALG+    PPPWL+NMQRYGPPPAYP L+IPGLNAP+PEGASFG HPGGWGKPPVDE G PLYGDVFG            E     E + R  WG  E++E EV         E+E  E+ +E       D +G ETP+T+  G+SSV SGL TPG    ++LRK   G E P ++P++LY VL Q++   G    +     YV+          G A  +   G R AS
Sbjct:   33 PAADTNPQSSPKDTIDVEYVSLDLKQELNALSNDDPSYTEFMRVFSKFSSAEELMGTLDNEENYDDEKSTVARESL-----KNGVLDADAEEGQTPASRKQRKKMKRLSVAELKQLVAFPDVVEAHDVTAADPRFLVYLKSYRNTIPVPRHWCHKRKYLQGKRGIEKKPFMLPGHNFIAHTGIADVRGVDIEEDAKKTSKQKSRERMQPKVGRIDIDYQVLHDAFFRYQTKPDLSILGDLYFEGKEFEVKLKSKIPGQLSSELKNALGMVEGVPPPWLLNMQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDETGAPLYGDVFGK---------AVETRTLVEGIGRERWG--ELQEPEVIEEEQDEQSEDETTEQNDEVITTEHMDATGTETPLTD--GISSVTSGLTTPG---VVDLRKGIRGTETP-DQPQQLYTVLPQQQASVGT-ALYGSAHAYVVPSANAN--VEGTASTISESGIRSAS 502          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|970650567|gb|KUF89574.1| (hypothetical protein AM588_10002272 [Phytophthora nicotianae])

HSP 1 Score: 434.876 bits (1117), Expect = 3.458e-143
Identity = 264/502 (52.59%), Postives = 329/502 (65.54%), Query Frame = 0
Query:   25 IKEGERRRRLPREWRMSPGGG------HTNGSVPTASGAPPPAPAPDVEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEE-------EEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGG 510
            + + +RRR   R  + +   G      +T+     A      AP PDVE++YVSADL  ELA   +DPA EE   +F KFS+AEELCG +  D +   +  +   +   G + +  EE E+E+     LSRK RKK  RLSVAELKQLVA PDVVEAHDVTS DP+LLV +K+YRN+VPVPRHWCHKRKYL GKRG EK PF+LP+F+  TGI + R+++ E    +  +Q+ RERV PKMGR+DIDY VL DAF R+QTKP LT  G++YYEGKEFE + ++  PG LS+EL  ALG+    PPPWL+N+QRYGPPPAYP L+IPGLNAP+PEGASFG HPGGWGKPPVDE G PLYGDVFG            E     EE+NR  WG +E +EEE EEEE E EE       E  G+    D +GLETP+ +  G+SSV SGL TPG    ++LRK   G E P + P++LY VLEQ+E   G   + +G   YV+ GG
Sbjct:    7 LTKNQRRRLKKRAQKQAEANGVKIEPANTSNGTTKAEKETALAPPPDVEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGAT--DNEDGKDDDKKEKDGADGDDDQAKEEAEKEQI----LSRKARKKSKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKT---------TESEKQGEEINRERWGELEEQEEEEEEEEGEGEEEQTEGAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTPGV---VDLRKGIRGTETP-DVPQQLYTVLEQKETSVGTSLYGSG-HAYVVPGG 486          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|970665639|gb|KUG02234.1| (Splicing factor 3B subunit 2 [Phytophthora nicotianae])

HSP 1 Score: 434.106 bits (1115), Expect = 6.764e-143
Identity = 264/502 (52.59%), Postives = 328/502 (65.34%), Query Frame = 0
Query:   25 IKEGERRRRLPREWRMSPGGG------HTNGSVPTASGAPPPAPAPDVEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEE-------EEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGG 510
            + + +RRR   R  + +   G      +T+     A      AP PDVE++YVSADL  ELA   +DPA EE   +F KFS+AEELCG +  D +   +  +   +   G + +  EE E E+     LSRK RKK  RLSVAELKQLVA PDVVEAHDVTS DP+LLV +K+YRN+VPVPRHWCHKRKYL GKRG EK PF+LP+F+  TGI + R+++ E    +  +Q+ RERV PKMGR+DIDY VL DAF R+QTKP LT  G++YYEGKEFE + ++  PG LS+EL  ALG+    PPPWL+N+QRYGPPPAYP L+IPGLNAP+PEGASFG HPGGWGKPPVDE G PLYGDVFG            E     EE+NR  WG +E +EEE EEEE E EE       E  G+    D +GLETP+ +  G+SSV SGL TPG    ++LRK   G E P + P++LY VLEQ+E   G   + +G   YV+ GG
Sbjct:    7 LTKNQRRRLKKRAQKQAEANGVKIEPANTSNGTTKAEKETALAPPPDVEVEYVSADLSKELALPQEDPAYEEMMRVFGKFSSAEELCGAT--DNEDGKDDDKKEKDGADGDDDQAKEEAEXEQI----LSRKARKKSKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKT---------TESEKQGEEINRERWGELEEQEEEEEEEEGEGEEEQTEGAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTPGV---VDLRKGIRGTETP-DVPQQLYTVLEQKETSVGTSLYGSG-HAYVVPGG 486          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|301111880|ref|XP_002905019.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262095349|gb|EEY53401.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 431.795 bits (1109), Expect = 5.233e-142
Identity = 254/460 (55.22%), Postives = 311/460 (67.61%), Query Frame = 0
Query:   61 APAPDVEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSR-LSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEEEEEGEERRK-----DESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGG 511
            AP  DVE++YVSADL  ELA   DDPA EE   +F KFS+AEELCG +       D       +K    +  G E+  +EE+   + LSRK RKK  RLSVAELKQLV  PDVVEAHDVTS DP+LLV +K+YRN+VPVPRHWCHKRKYL GKRG EK PF+LP+F+  TGI + R+++ E    +  +Q+ RERV PKMGR+DIDY VL DAF R+QTKP LT  G++YYEGKEFE + ++  PG LS+EL  ALG+    PPPWL+N+QRYGPPPAYP L+IPGLNAP+P+GASFG HPGGWGKPPVDE G PLYGDVFG            E     E++NR  WG  E +EEE EEE+ EEE+ E   E        D +GLETP+ +  G+SSV SGL TPG    ++LRK   G E P +EP++LY VLEQ+E   G   + +G   YV+ GG 
Sbjct:   49 APPLDVEVEYVSADLSKELALPQDDPAYEEMMRVFGKFSSAEELCGAT-------DNEDGKDDDKEGKDDAEGNEDQTKEEEEEEQVLSRKARKKSKRLSVAELKQLVVYPDVVEAHDVTSADPRLLVFLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDEKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPDGASFGYHPGGWGKPPVDENGVPLYGDVFG---------KPAESENQGEDINRERWGEFEEQEEEEEEEDGEEEQPEGNVEGNDDADGLDATGLETPLVD--GISSVASGLTTPGV---VDLRKGIRGTETP-DEPQQLYTVLEQKETSVGTSLYGSG-HAYVVPGGA 485          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|325191500|emb|CCA26273.1| (conserved hypothetical protein [Albugo laibachii Nc14])

HSP 1 Score: 431.795 bits (1109), Expect = 5.398e-142
Identity = 248/514 (48.25%), Postives = 318/514 (61.87%), Query Frame = 0
Query:   30 RRRRLPREWRMSPGGGHTNGS-VPTASGAPPPAPAPDVEIQYVSADLESEL---AGDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEE------EEEEEEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGGGGGRAMGGAGRVGARGASDVS 532
            +RRRL  + +++    H      P     P  +P   ++++YVS +L+ EL   + +DP   EF  +F KFS+AEEL G     +  ++E   G  +K      + G  D +  +  +  SRKQRKK+ RLSVAELKQLVA PDVVEAHDVT+ DP+ LV +K+YRN++PVPRHWCHKRKYL GKRGIEK PF LPDFV  TGI   R    E+   +T++QK RER+ PK+GR+DIDY VL DAF RYQTKP L+  G+LYYEGKEFE + ++  PG LS EL NALG+    PPPWL+NMQRYGPPPAYP L+IPGL+AP+PEGASFG HPGGWGKPPVDE G PLYGDVFG            E     E + R  WG ++  E   EE++E       E+ +E     R D +G ETP+T+  G+SSV SGL TPG    ++LRK   G E P ++P++LY VL Q++   G    +     YV+        A G A  +   G   VS
Sbjct:   12 QRRRL--KQKLAKQSSHAKSKEDPVVDSNPQNSPKDAIDVEYVSLNLKEELNALSDNDPTYMEFMRVFSKFSSAEELMG-----QVEIEESATGEMKKSIRDSNKNGALDVDTNEDQTPASRKQRKKMKRLSVAELKQLVAFPDVVEAHDVTAADPRFLVYLKSYRNTIPVPRHWCHKRKYLQGKRGIEKKPFMLPDFVAHTGIADVRGVDIEEDAKKTSKQKSRERMQPKVGRIDIDYQVLHDAFFRYQTKPDLSILGDLYYEGKEFEVKLKSKIPGQLSSELKNALGMVDGVPPPWLLNMQRYGPPPAYPNLKIPGLSAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGK---------AVEMRTLVEGIGRERWGELQEPEVVEEEQDEQSEDEMTEQNDEVITTERMDATGTETPLTD--GISSVNSGLTTPG---VVDLRKGIRGTETP-DQPQQLYTVLPQQQASVGT-ALYGSAHSYVVPSAN----AEGTASTISESGTKSVS 498          
BLAST of EWM27761.1 vs. NCBI_GenBank
Match: gi|570316496|gb|ETO64444.1| (hypothetical protein F444_17999 [Phytophthora parasitica P1976])

HSP 1 Score: 430.254 bits (1105), Expect = 2.678e-141
Identity = 264/503 (52.49%), Postives = 328/503 (65.21%), Query Frame = 0
Query:   25 IKEGERRRRLPREWRMSPGGG------HTNGSVPTASGAPPPAPAPDVEIQYVSADLESELA--GDDPALEEFREIFKKFSTAEELCGTSVDDEKGVDEGGEGAGEKVSGGEGRGGEEDEEEEKTGSRLSRKQRKKLNRLSVAELKQLVARPDVVEAHDVTSQDPQLLVQMKAYRNSVPVPRHWCHKRKYLTGKRGIEKAPFELPDFVKATGIQKQREAMEEKLRLQTARQKMRERVNPKMGRMDIDYAVLEDAFLRYQTKPPLTPHGELYYEGKEFEARTRNHTPGVLSEELVNALGIPPLYPPPWLMNMQRYGPPPAYPALRIPGLNAPLPEGASFGMHPGGWGKPPVDEYGRPLYGDVFGVLGGGDGGALGGEGGAGAEEVNRRHWGGVEVEEEEVEEEEEEEEE-------EEEGEERRKDESGLETPVTEATGLSSVVSGLETPGEAMGMELRKQA-GLEAPSEEPKELYKVLEQREGGGGAGGFFAGDKKYVMEGGG 511
            + + +RRR   R  + +   G      +T+     A      AP PDVE++YVSADL  ELA   +DPA EE   IF KFS+AEELCG + +++   D+  E  G      + +   E+E+       LSRK RKK  RLSVAELKQLVA PDVVEAHDVTS DP+LLV +K+YRN+VPVPRHWCHKRKYL GKRG EK PF+LP+F+  TGI + R+++ E    +  +Q+ RERV PKMGR+DIDY VL DAF R+QTKP LT  G++YYEGKEFE + ++  PG LS+EL  ALG+    PPPWL+N+QRYGPPPAYP L+IPGLNAP+PEGASFG HPGGWGKPPVDE G PLYGDVFG            E     EE+NR  WG +E +EEE EEEE E EE       E  G+    D +GLETP+ +  G+SSV SGL TPG    ++LRK   G E P + P++LY VLEQ+E   G   + +G   YV+ GG 
Sbjct:    7 LTKNQRRRLKKRAQKQAEANGVKIEPANTSNGTTKAEKETALAPPPDVEVEYVSADLSKELALPQEDPAYEEMMRIFGKFSSAEELCGATDNEDGKDDDKKEKDGADGDDDQAKEEAEEEQ------ILSRKARKKSKRLSVAELKQLVAYPDVVEAHDVTSADPRLLVYLKSYRNTVPVPRHWCHKRKYLQGKRGFEKQPFQLPEFIAQTGIAEVRDSVAEDDDKKRNKQRARERVQPKMGRVDIDYQVLHDAFFRFQTKPKLTQLGDVYYEGKEFEVKLKSKVPGQLSDELKAALGMVEGVPPPWLLNVQRYGPPPAYPNLKIPGLNAPIPEGASFGYHPGGWGKPPVDENGVPLYGDVFGKT---------TESEKQGEEINRERWGELEEQEEEEEEEEGEGEEEQTEGAMEGNGDVDGLDATGLETPLVD--GISSVASGLTTPGV---VDLRKGIRGTETP-DVPQQLYTVLEQKETSVGTSLYGSG-HAYVVPGGA 487          
The following BLAST results are available for this feature:
BLAST of EWM27761.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110037|gb|EWM27761.1|0.000e+0100.00splicing factor 3b subunit 2 [Nannochloropsis gadi... [more]
gi|553186930|ref|XP_005854519.1|0.000e+092.10splicing factor 3B subunit 2 [Nannochloropsis gadi... [more]
gi|553177216|ref|XP_005852444.1|0.000e+092.66splicing factor 3B subunit 2, partial [Nannochloro... [more]
gi|298707650|emb|CBJ25967.1|8.218e-14548.76proline-rich spliceosome-associated (PSP) family p... [more]
gi|635360312|emb|CCI50321.1|6.734e-14450.30unnamed protein product [Albugo candida][more]
gi|970650567|gb|KUF89574.1|3.458e-14352.59hypothetical protein AM588_10002272 [Phytophthora ... [more]
gi|970665639|gb|KUG02234.1|6.764e-14352.59Splicing factor 3B subunit 2 [Phytophthora nicotia... [more]
gi|301111880|ref|XP_002905019.1|5.233e-14255.22conserved hypothetical protein [Phytophthora infes... [more]
gi|325191500|emb|CCA26273.1|5.398e-14248.25conserved hypothetical protein [Albugo laibachii N... [more]
gi|570316496|gb|ETO64444.1|2.678e-14152.49hypothetical protein F444_17999 [Phytophthora para... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2925rna2925Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications