rna2920, rna2920 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2920
Unique Name	rna2920
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	769
Alignment location	CM002460.1:272427..273359 -

Link to JBrowse

Properties


Property Name	Value
Product	dtdp-glucose -dehydratase
Orig transcript id	gnl\|cribi\|Naga_100248g1.4999.mrna
Orig protein id	gnl\|cribi\|Naga_100248g1.4999
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:272427..273359 -

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_100248g1	gene2801	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27755.1	cds2912	Nannochloropsis gaditana (N. gaditana B-31)	CDS

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2920	rna2920-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:272427..273359-
coding sequence from alignment at CM002460.1:272427..273359-

mRNA sequence

>rna2920 ID=rna2920|Name=rna2920|organism=Nannochloropsis gaditana|type=mRNA|length=769bp
GGTGGCGGAGACGATGATGTACGCCTATCACAACCAGAGCTCCGTGGACG
TCCGGGTGGCGCGGATTTTCAACACCTTCGGCCCGCGCATGCACCCGAAC
GACGGACGCGTGGTCAGCAACTTCATCATCCAGGCCCTGCAGGGTAAGGA
CATCACTATTTACGGCGAGGGTCACCAGACCCGCTCTTTCCAGTATGTGG
AGGACCTGGTGACGGGCTTGACGAAGCTCATGAACTCGGACTACGGCCTC
CCGGTCAATCTGGGCAATCCCGAGGAATACACCGTGAAAGACTTCGCCCT
CCTTGTCAAGGAGCTGGTTGTGGGCTCTCCCTCCGCCATCGTCCACATGC
CCGCCACCAAGGACGACCCAGCCAAGCGAAAGCCTGACATCCGGGTAGCC
ATGGACGTTTTGGGCTGGCAGCCGCGAGTGCCTGTGCGGGAGGGATTGAG
CAAGACGGTGGCCTACTTCCGCTCTGAATTGGAAGACACGGGTGAGATAG
TACCCACGGGGCCCGATGCGACACGGCCCAAGCCCTGCTGCTCGAACGTC
CTGTCGCCGAGCAGAGAGTATGAAGACCATTTGTATGCAGAAACGATGCC
GGCGGCAGATGAGACAAGGTTGTACTGAGATCGGGGGGGGGGGGCGAGTG
AACAGGGAACAGTGGACATGTAGTGTACCGGACTGATGTCTTCGTGGAAG
AAGATTCCTTCTCTGCGAGGAGTAATTCATGGAGCCTTCCGGCTCTGTAT
GAATATTTTTTTATTTCTT

protein sequence of rna2920

>rna2920-protein ID=rna2920-protein|Name=rna2920|organism=Nannochloropsis gaditana|type=polypeptide|length=303bp
MTDILMRMPLRCHNQQHRGASMVNALRGSGRASSSVSSPYAALLTAAAVG
GAALTVGVACLWPQLIEEYAGIRIVVKKVRCNRSRGRGVGTGSKNEDKSD
KGGSDEMSAALRDVIQHEIGHQVHERVNAMNKAHQAAGWGGKVFPPTATL
PESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWI
GHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGT
LNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDE
GKR

mRNA from alignment at CM002460.1:272427..273359-

Legend: CDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2920 ID=rna2920|Name=rna2920|organism=Nannochloropsis gaditana|type=mRNA|length=933bp|location=Sequence derived from alignment at CM002460.1:272427..273359- (Nannochloropsis gaditana)
ACACATGTCTCGATGTTGCTATTAAATGACTGACATACTCATGCGTATGC
CGTTGCGGTGCCACAACCAACAGCACAGGGGCGCATCTATGGTAAATGCA
CTAAGGGGGTCGGGACGAGCAAGCTCCTCAGTGTCCTCCCCATATGCTGC
TCTGTTGACTGCGGCAGCAGTGGGAGGGGCAGCGCTCACTGTGGGAGTGG
CATGTTTATGGCCACAACTGATTGAGGAGTATGCGGGAATCAGAATCGTG
GTGAAAAAGGTGCGATGCAATCGCAGCAGAGGGCGAGGTGTGGGCACGGG
GAGCAAAAACGAGGACAAGTCTGATAAAGGCGGCAGCGATGAGATGTCTG
CAGCGCTGCGGGACGTCATACAGCACGAAATCGGTCATCAGGTGCATGAG
CGTGTGAATGCGATGAACAAGGCTCATCAAGCTGCAGGCTGGGGGGGCAA
GGTCTTTCCACCCACAGCAACGCTGCCTGAGTCCCAGAGGATGAGGGTGT
TGGTGACGGGGGGGGCGGGCTTTGTGGGTTCCCATCTGGTCGACCGCCTG
ATGGCCGAGGGGCACGAGGTGATCGTGGTGGACAACATGTTCACGGGGCG
GAAGAAGAACGTGGCGCACTGGATCGGGCACCCCCACTTCATGCTCATCG
TCCACGACGTGGTGGAGCCCATCCTCCTGGAGGTGGACCAGATCTACCAC
CTGGCCTGCCCCGCCTCCCCCCCCCACTACCAGTACAACCCGATCAAGAC
GATCAAGACCAGCACCATGGGCACCTTGAACATGCTCGGCCTCGCCAAGC
GGGTCCGGGCCCGCATGCTCCTGACCTCCACCAGCGAGGTGTATGGCGAC
CCGCAAATCCACCCCCAGCCCGAGTCCTATTGGGGCAACGTGAACCCTAT
CGGGCCCCGGGCGTGCTACGACGAGGGGAAGCG

Coding sequence (CDS) from alignment at CM002460.1:272427..273359-

>rna2920 ID=rna2920|Name=rna2920|organism=Nannochloropsis gaditana|type=CDS|length=908bp|location=Sequence derived from alignment at CM002460.1:272427..273359- (Nannochloropsis gaditana)
ATGACTGACATACTCATGCGTATGCCGTTGCGGTGCCACAACCAACAGCA
CAGGGGCGCATCTATGGTAAATGCACTAAGGGGGTCGGGACGAGCAAGCT
CCTCAGTGTCCTCCCCATATGCTGCTCTGTTGACTGCGGCAGCAGTGGGA
GGGGCAGCGCTCACTGTGGGAGTGGCATGTTTATGGCCACAACTGATTGA
GGAGTATGCGGGAATCAGAATCGTGGTGAAAAAGGTGCGATGCAATCGCA
GCAGAGGGCGAGGTGTGGGCACGGGGAGCAAAAACGAGGACAAGTCTGAT
AAAGGCGGCAGCGATGAGATGTCTGCAGCGCTGCGGGACGTCATACAGCA
CGAAATCGGTCATCAGGTGCATGAGCGTGTGAATGCGATGAACAAGGCTC
ATCAAGCTGCAGGCTGGGGGGGCAAGGTCTTTCCACCCACAGCAACGCTG
CCTGAGTCCCAGAGGATGAGGGTGTTGGTGACGGGGGGGGCGGGCTTTGT
GGGTTCCCATCTGGTCGACCGCCTGATGGCCGAGGGGCACGAGGTGATCG
TGGTGGACAACATGTTCACGGGGCGGAAGAAGAACGTGGCGCACTGGATC
GGGCACCCCCACTTCATGCTCATCGTCCACGACGTGGTGGAGCCCATCCT
CCTGGAGGTGGACCAGATCTACCACCTGGCCTGCCCCGCCTCCCCCCCCC
ACTACCAGTACAACCCGATCAAGACGATCAAGACCAGCACCATGGGCACC
TTGAACATGCTCGGCCTCGCCAAGCGGGTCCGGGCCCGCATGCTCCTGAC
CTCCACCAGCGAGGTGTATGGCGACCCGCAAATCCACCCCCAGCCCGAGT
CCTATTGGGGCAACGTGAACCCTATCGGGCCCCGGGCGTGCTACGACGAG
GGGAAGCG

Synonyms

Publications