EWM27755.1, cds2912 (CDS) Nannochloropsis gaditana

Overview
NameEWM27755.1
Unique Namecds2912
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:272427..273334 -

Link to JBrowse

Properties
Property NameValue
Start range272427
Start range.
Protein idEWM27755.1
Productdtdp-glucose -dehydratase
Partialtrue
Orig transcript idgnl|cribi|Naga_100248g1.4999.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:272427..273334 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
GO:0005737cytoplasm
Vocabulary: Molecular Function
TermDefinition
GO:0000166nucleotide binding
GO:0050662coenzyme binding
GO:0003824catalytic activity
Vocabulary: INTERPRO
TermDefinition
IPR001509Epimerase_deHydtase_N
IPR016040NAD(P)-bd_dom
Homology
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|585110031|gb|EWM27755.1| (dtdp-glucose -dehydratase, partial [Nannochloropsis gaditana])

HSP 1 Score: 629.402 bits (1622), Expect = 0.000e+0
Identity = 303/303 (100.00%), Postives = 303/303 (100.00%), Query Frame = 0 
Query:    1 MTDILMRMPLRCHNQQHRGASMVNALRGSGRASSSVSSPYAALLTAAAVGGAALTVGVACLWPQLIEEYAGIRIVVKKVRCNRSRGRGVGTGSKNEDKSDKGGSDEMSAALRDVIQHEIGHQVHERVNAMNKAHQAAGWGGKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            MTDILMRMPLRCHNQQHRGASMVNALRGSGRASSSVSSPYAALLTAAAVGGAALTVGVACLWPQLIEEYAGIRIVVKKVRCNRSRGRGVGTGSKNEDKSDKGGSDEMSAALRDVIQHEIGHQVHERVNAMNKAHQAAGWGGKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR
Sbjct:    1 MTDILMRMPLRCHNQQHRGASMVNALRGSGRASSSVSSPYAALLTAAAVGGAALTVGVACLWPQLIEEYAGIRIVVKKVRCNRSRGRGVGTGSKNEDKSDKGGSDEMSAALRDVIQHEIGHQVHERVNAMNKAHQAAGWGGKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|553190626|ref|XP_005855230.1| (UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526] >gi|422293832|gb|EKU21132.1| UDP-glucuronate decarboxylase [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 337.806 bits (865), Expect = 4.992e-110
Identity = 156/163 (95.71%), Postives = 160/163 (98.16%), Query Frame = 0 
Query:  141 GKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            G+++PPTATL E QR R+LVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR
Sbjct:  148 GQLYPPTATLSEGQRRRILVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 310
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|298708329|emb|CBJ48392.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 300.056 bits (767), Expect = 1.293e-95
Identity = 145/208 (69.71%), Postives = 165/208 (79.33%), Query Frame = 0 
Query:  104 SDEM--SAALRDVIQHEIGHQVHERVNAMNK------AHQAAGWGGKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            SDE   S+ ++++++ E+  +V ++V+ +N       + +        FPPTA L E  RMRVLVTGGAGFVGSHLVD LM  GH+VIV+DN FTGR+KNV HWIGHP F LI HDVVEPI LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKR  ARMLLTSTSEVYGDP+ HPQ E+YWGNVNPIGPRACYDEGKR
Sbjct:   90 SDEYVSSSRVQEMVEVEVQRRVQQQVSLLNSEPHTLPSEERGPAVANNFPPTADLSEKDRMRVLVTGGAGFVGSHLVDALMKMGHDVIVLDNFFTGRQKNVQHWIGHPSFHLITHDVVEPIKLEVDQIYHLACPASPPHYQYNPIKTIKTSTQGTLNMLGLAKRTGARMLLTSTSEVYGDPEEHPQRETYWGNVNPIGPRACYDEGKR 297
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|470305216|ref|XP_004348266.1| (UDP-glucuronic acid decarboxylase 1 [Capsaspora owczarzaki ATCC 30864] >gi|765553062|gb|KJE93683.1| UDP-glucuronic acid decarboxylase 1 [Capsaspora owczarzaki ATCC 30864])

HSP 1 Score: 293.123 bits (749), Expect = 2.515e-93
Identity = 135/201 (67.16%), Postives = 162/201 (80.60%), Query Frame = 0 
Query:  103 GSDEMSAALRDVIQHEIGHQVHERVNAMNKAHQAAGWGGKVFPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            G  E+  A  D I+ EI  ++H  +  +NK  + A   GKV+PPT      +R ++LVTGGAGFVGSHLVD LMA+GHEV VVDN +TGR++N+ HW+GHP+F LIVHDV EPI L+VDQIYHLA PASPPHYQ+NPIKTIKT+ +GTLNMLGLA+RV+A  LL STSEVYGDP++HPQPESYWG+VNPIGPRACYDEGKR
Sbjct:   39 GPAEIDVATSDYIEREIQRRMHASLLTLNK--ELALQVGKVYPPTEYRNAGERKKILVTGGAGFVGSHLVDALMAQGHEVTVVDNFYTGRRQNIEHWVGHPNFQLIVHDVQEPIFLQVDQIYHLASPASPPHYQHNPIKTIKTNAVGTLNMLGLARRVKAEFLLASTSEVYGDPEVHPQPESYWGHVNPIGPRACYDEGKR 237
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|223999897|ref|XP_002289621.1| (dtdp-glucose 4,6-dehydratase, partial [Thalassiosira pseudonana CCMP1335] >gi|220974829|gb|EED93158.1| dtdp-glucose 4,6-dehydratase, partial [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 286.96 bits (733), Expect = 7.367e-93
Identity = 123/157 (78.34%), Postives = 146/157 (92.99%), Query Frame = 0 
Query:  147 TATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            T +LP+ +R ++LVTGGAGFVGSHLVD+LM EGHEVIV+DN FTG++KN+ HW+ HP F L+VHDV EPI+LEVD+IYHLACPASPPHYQYNP+KTIKTSTMGT+NMLGLAKRV+A++LLTSTSE+YGDP++HPQPESYWGNVN IGPR+CYDEGKR
Sbjct:    3 TPSLPDGKRKKILVTGGAGFVGSHLVDKLMMEGHEVIVIDNFFTGQRKNIEHWMHHPRFSLVVHDVTEPIMLEVDEIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKAKILLTSTSEIYGDPKVHPQPESYWGNVNTIGPRSCYDEGKR 159
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|397589944|gb|EJK54854.1| (hypothetical protein THAOC_25481 [Thalassiosira oceanica])

HSP 1 Score: 288.115 bits (736), Expect = 8.994e-93
Identity = 126/157 (80.25%), Postives = 144/157 (91.72%), Query Frame = 0 
Query:  147 TATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            T  LP+S+R ++LVTGG+GFVGSHLVDRLM+EGHEV+V+DN FTGRK NV HW+ HP+F L+ HDV +PILLEVDQIYHLACPASPPHYQYNP+KTIKTSTMGT+NMLGLAKRV+AR+LL STSE+YGDPQ+HPQPESYWGNVN IG RACYDEGKR
Sbjct:   53 TVRLPDSKRKKILVTGGSGFVGSHLVDRLMSEGHEVVVLDNFFTGRKANVEHWLQHPNFSLVRHDVTQPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKARILLASTSEIYGDPQVHPQPESYWGNVNTIGIRACYDEGKR 209
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|1183363477|gb|ORX90249.1| (NAD(P)-binding protein [Basidiobolus meristosporus CBS 931.73])

HSP 1 Score: 287.73 bits (735), Expect = 5.284e-92
Identity = 126/160 (78.75%), Postives = 141/160 (88.12%), Query Frame = 0 
Query:  144 FPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            FPP   L  S++ R+LVTGGAGFVGSHLVDRLM  GHEVIVVDN FTG K+NV HWIGHPHF L+ HDVV+P ++EVDQIYHLACPASPPHYQYNPIKT+KTS +GT+NMLGLAKRV+AR LL STSE+YGDP++HPQ E YWGNVNPIGPRACYDEGKR
Sbjct:   69 FPPIRMLKASEKKRILVTGGAGFVGSHLVDRLMIMGHEVIVVDNFFTGNKRNVQHWIGHPHFELVRHDVVDPFMIEVDQIYHLACPASPPHYQYNPIKTVKTSVLGTMNMLGLAKRVKARFLLASTSEIYGDPEMHPQKEEYWGNVNPIGPRACYDEGKR 228
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|224005937|ref|XP_002291929.1| (dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335] >gi|220972448|gb|EED90780.1| dtdp-glucose 4,6-dehydratase [Thalassiosira pseudonana CCMP1335])

HSP 1 Score: 286.574 bits (732), Expect = 9.694e-92
Identity = 125/157 (79.62%), Postives = 144/157 (91.72%), Query Frame = 0 
Query:  147 TATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            T  LP++ R ++LVTGGAGFVGSHLVDRLM+EGHEV+V+DN FTGRK NV HW+ HP+F L+ HDV++PILLEVDQIYHLACPASPPHYQYNP+KTIKTSTMGT+NMLGLAKRV+AR+LL STSE+YGDP +HPQPESYWGNV+ IGPRACYDEGKR
Sbjct:   51 TTRLPDALRKKILVTGGAGFVGSHLVDRLMSEGHEVVVLDNFFTGRKANVEHWLHHPNFSLVRHDVIQPILLEVDQIYHLACPASPPHYQYNPVKTIKTSTMGTINMLGLAKRVKARILLASTSEIYGDPTVHPQPESYWGNVHTIGPRACYDEGKR 207
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|676390577|ref|XP_009038566.1| (hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens] >gi|323450941|gb|EGB06820.1| hypothetical protein AURANDRAFT_28689 [Aureococcus anophagefferens])

HSP 1 Score: 285.419 bits (729), Expect = 1.051e-91
Identity = 126/160 (78.75%), Postives = 143/160 (89.38%), Query Frame = 0 
Query:  144 FPPTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            +PP   LP+++++R+LVTGGAGFVGS+LVD+LM  GHEV V+DN+FTGRKKN+ HW  HPHF  IV DVVE I+LEVDQIYHLACPASPPHYQYNPIKTIKTST GTLNMLGLAKRV ARMLL STSE+YGDP++HPQ E+YWGNVNPIGPRACYDEGKR
Sbjct:   13 YPPVRKLPQNEKLRILVTGGAGFVGSNLVDKLMRGGHEVTVLDNLFTGRKKNIEHWFNHPHFQFIVGDVVESIMLEVDQIYHLACPASPPHYQYNPIKTIKTSTEGTLNMLGLAKRVNARMLLASTSEIYGDPEVHPQVETYWGNVNPIGPRACYDEGKR 172
[Close]
BLAST of EWM27755.1 vs. NCBI_GenBank
Match: gi|219130674|ref|XP_002185484.1| (nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1] >gi|217403015|gb|EEC42971.1| nad-dependent epimerase/dehydratase [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 290.041 bits (741), Expect = 1.670e-91
Identity = 129/158 (81.65%), Postives = 146/158 (92.41%), Query Frame = 0 
Query:  146 PTATLPESQRMRVLVTGGAGFVGSHLVDRLMAEGHEVIVVDNMFTGRKKNVAHWIGHPHFMLIVHDVVEPILLEVDQIYHLACPASPPHYQYNPIKTIKTSTMGTLNMLGLAKRVRARMLLTSTSEVYGDPQIHPQPESYWGNVNPIGPRACYDEGKR 303
            PT  LP+ QR ++LVTGGAGFVGSHLVD+LM +G EVIVVDN FTG+KKNVAHW+ HP+F L+VHDV EPI LEVD+IYHLACPASPPHYQYNP+KTIKTSTMGTLNMLGLAKRVRA++LLTSTSE+YGDP++HPQPESYWGNVN IGPR+CYDEGKR
Sbjct:  180 PTKVLPDHQRKKILVTGGAGFVGSHLVDKLMMDGMEVIVVDNFFTGQKKNVAHWLHHPNFSLVVHDVTEPIQLEVDEIYHLACPASPPHYQYNPVKTIKTSTMGTLNMLGLAKRVRAKILLTSTSEIYGDPKVHPQPESYWGNVNTIGPRSCYDEGKR 337
The following BLAST results are available for this feature:
BLAST of EWM27755.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110031|gb|EWM27755.1|0.000e+0100.00dtdp-glucose -dehydratase, partial [Nannochloropsi... [more]
gi|553190626|ref|XP_005855230.1|4.992e-11095.71UDP-glucuronate decarboxylase [Nannochloropsis gad... [more]
gi|298708329|emb|CBJ48392.1|1.293e-9569.71conserved unknown protein [Ectocarpus siliculosus][more]
gi|470305216|ref|XP_004348266.1|2.515e-9367.16UDP-glucuronic acid decarboxylase 1 [Capsaspora ow... [more]
gi|223999897|ref|XP_002289621.1|7.367e-9378.34dtdp-glucose 4,6-dehydratase, partial [Thalassiosi... [more]
gi|397589944|gb|EJK54854.1|8.994e-9380.25hypothetical protein THAOC_25481 [Thalassiosira oc... [more]
gi|1183363477|gb|ORX90249.1|5.284e-9278.75NAD(P)-binding protein [Basidiobolus meristosporus... [more]
gi|224005937|ref|XP_002291929.1|9.694e-9279.62dtdp-glucose 4,6-dehydratase [Thalassiosira pseudo... [more]
gi|676390577|ref|XP_009038566.1|1.051e-9178.75hypothetical protein AURANDRAFT_28689 [Aureococcus... [more]
gi|219130674|ref|XP_002185484.1|1.670e-9181.65nad-dependent epimerase/dehydratase [Phaeodactylum... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2920rna2920Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications