rna2915, rna2915 (mRNA) Nannochloropsis gaditana

Overview
Namerna2915
Unique Namerna2915
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length2045
Alignment locationCM002460.1:262506..263315 -

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Properties
Property NameValue
ProductTRAPP II complex, Trs120 protein
Orig transcript idgnl|cribi|Naga_100705g3.4005.mrna
Orig protein idgnl|cribi|Naga_100705g3.4005
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:262506..263315 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100705g3gene2796Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27764.1cds2907Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2915rna2915-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2915 ID=rna2915|Name=rna2915|organism=Nannochloropsis gaditana|type=mRNA|length=2045bp
AACGCGGACCCCCCCCCCCGCCCGGATCCCGCCCTCGCCCCGTCCTCCTC
CTCGATCTCCGCCTCCTCCTTCACAGTCCTGCAGCCAGTCTCTTTCCCTC
ACGCCTCGCCCCGCCGGGCCCGACATCCTCCCTCCCCGCCCTCCTCCCCA
CCCTTCTTTCCTCGCTCCCCCGGCCCCGCTCCCTCTCTCCCTCTCGCCCT
CGGCGATCCGCCCGCTGCCAAGCCCTCTACCTGTACCTTCCCCCCTTATG
CCTCCATCCCCATCCACTTTCGCGTCACCAACCGCTCCCCGACGGAAACG
CTCCCCGCCTGCAAGTGCTTCGCTCACTCCTACCAAGACTATGGACAGGG
AAACCTTAACTTCGCCATCGACTCGGTTCGCGCCATGTGGTCAGGGAGCT
TGGCCTGGACGACCCCTCCCCTCGCGCCGCTGGACTCTCACTTGCACGTG
GCCTTCGTGAGTTTCACGGCGTCGGGGGCCTACGGTGTGGGGTGGAGCGT
GTCCTACCTTCCCGACGAGGAGGGGCAGGGGGATGGGGAGGGAGGGGGGG
CAGGCGACGGAGGTGCCATGCCATCGTCCCATGCGGATTTGGGCGGGTGT
GCGAAGGAGGGGGTGTCAAGCGCGGAGGAGAAGAGGGAGCCGTTGCTGTA
CTGGGGCCAGGAGGCGCAGGTGCTGGTGATCACGGAGATTAATGGGGAAG
ACGAGATGGCCAAGGAGCATTGAGGAGTGGCATCGGGGGGCTGATGAAGC
AACGATTGACATCGAGTGCGAACTCAATGCTTTGAAGCATGGGTGGACGC
AATTTGCGGTTATACCAAAGTGTACAAATGAATACAGCAGACAGATATGT
CAGAGACAAATAAGCTGGGACAAGCCCAACACATGACTTTACTCGCTTCT
TCTTTTTGATGTCATCTTCGAGCACAATGTTTATCAGATAGGCGTGGCCC
CGCTTATTTGAGCCAAAATGTAGCGGCATCATCTCAAGAGAGCAAGAGCA
CGGATAGATGGTCCTCGTAAAATTTTCACTTCCTGTATTGAGGACAAGTG
CACACCACGGACTGAACTAGACACCGGAAGGTAAACGCCTCCGTTCTCGC
TATGGAGCATTAAAGTCGATTCTCTCGCTCGAACAAAAAATATTAATCTA
GTTTCTCCTCAAGGGGGTATGACTTCCATATTTTGACGCCCATCATGCAA
TTTATGCGGTATCGGAGTGGGCGGAGAGGGGGAGGAGGTTGAAAGCTTCT
TCCTTCATGTCTTCGGGACCTTTACATTCACTCAAACACTTTGCCATCGG
CCCTCAGGCATGTCCATCTCGACCTCTATACTATGTATCTCCCCCCTAAG
TTAGAAATAAAGCCGGGGCTTTGTTATTACTTTCCTGGACAGGTATTGGG
AAGGCACGGGGGACAAGGCAAGGACCAAATTTACCTCCTCCTTCCCCGGC
CCGCCCCTGTATTTTGTTCGGATGGCCGCATTCAACGATCATGATTTTTC
GTTTTTTTAATGCACGCACTTCATTTCCCCAAAAAAACATGAACAGTGGT
GCTGCGGGATATATGGAACCTTCGTCGCCACCTTTTCGAAAGCCGCCGGC
ACCACTCGACGACGCCCATCCTATAACCGGTCTTCGCGAGGCTATACGAG
CCCTCAACCAAGTCGATGACGCGATGATGGCTTACGATAACAAACTTACG
ATTCCGTCTGTGACCAGGTCTCTCGATGCCTTCGTGCAGGCATTGAAAAA
GGTACAGGACGGACGGCATGTCTTCGGCGACGAAGACATTCCGTTAGACC
TGTTGGAGCGCATAGAGAAGGAGGGTCTCAACCCTGATGTGTACACGATT
GAGCGTCTAGAAAAGGGCTTGGAGGACTTGGAGGCGGTTGCGCTCAGGGA
TCAACTGCTGGAGGAAATCAAAGAGGGTATGAAAGCAGGTATGAAGCGGA
AAGAGCGAAATGACCCCGAGACACAAAAGAGCACGATAGTTGTCAAGGAG
GAAGACTCGTGAAAAGAAAAATTCCAACGAGCGCAACCGTATGCT
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protein sequence of rna2915

>rna2915-protein ID=rna2915-protein|Name=rna2915|organism=Nannochloropsis gaditana|type=polypeptide|length=176bp
MNVLHHAEEEPNSFAAHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELP
MANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQA
FRRTWAVSPQRLFLVKYLFIQALASDAYHFARFIASHCPGRTSGAALPLC
SSPAGSAFRYQMPVCWSGCTLDFIHS
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mRNA from alignment at CM002460.1:262506..263315-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2915 ID=rna2915|Name=rna2915|organism=Nannochloropsis gaditana|type=mRNA|length=810bp|location=Sequence derived from alignment at CM002460.1:262506..263315- (Nannochloropsis gaditana)
CCTTGGTGCTCGGAACCAGCGACAGGAGCGATACCGGACTCCCAGGGAGG
CTGGTATCTCGCGTTGCCAGAAGGAAACGCGTGCTGTGTGACCTGATCGC
CCCTCCGGCGCTTGCCACCTTCCCGTGTTGTAGTCGTATCTCCTGCCATC
GCGCCAGGCGCCAACGTGTGTCTACCTTTACCGACAGGCATACATAATAG
TCACAGGTACTCGCTGATTTTGAAGAGTTGCAGCAGCACATATGCACCCG
TATACACACACGCAAATCGAGCCACGAAGATGAACGTTTTGCACCATGCA
GAAGAGGAGCCAAACTCTTTCGCAGCCCATCGGCAGCTTCGTGTGGCGGT
TGTTCCATTGGGCGGGGTGCCGGGTGCACGATTCCGCGTTTACCTCTCCC
TCCTTCGGCGCTCTTTCCACGAGCTTCCTATGGCAAATTTAAGCAAGCCC
GGTTCCTGGAAGAAGGAAAGTTCACCCTTCAAGCATTTTTCATGGTTCGA
CGGGAACCTTTTGCTACAGTACCTGGACCGGGCTCCGCCCTCCACGTCGG
CATCCTCCGAATGGCAAGATTTCCAGGCGTTCCGGCGTACTTGGGCGGTA
AGTCCCCAAAGGCTCTTCCTCGTCAAATACCTTTTCATCCAGGCCCTTGC
TTCCGATGCGTATCACTTCGCGAGGTTCATAGCCAGCCATTGTCCGGGTC
GGACCTCTGGCGCGGCCCTCCCTCTGTGTTCGAGTCCCGCAGGCAGTGCG
TTTCGATATCAGATGCCTGTCTGTTGGTCTGGATGCACTTTGGATTTCAT
TCATTCGTAG
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Coding sequence (CDS) from alignment at CM002460.1:262506..263315-

>rna2915 ID=rna2915|Name=rna2915|organism=Nannochloropsis gaditana|type=CDS|length=531bp|location=Sequence derived from alignment at CM002460.1:262506..263315- (Nannochloropsis gaditana)
ATGAACGTTTTGCACCATGCAGAAGAGGAGCCAAACTCTTTCGCAGCCCA
TCGGCAGCTTCGTGTGGCGGTTGTTCCATTGGGCGGGGTGCCGGGTGCAC
GATTCCGCGTTTACCTCTCCCTCCTTCGGCGCTCTTTCCACGAGCTTCCT
ATGGCAAATTTAAGCAAGCCCGGTTCCTGGAAGAAGGAAAGTTCACCCTT
CAAGCATTTTTCATGGTTCGACGGGAACCTTTTGCTACAGTACCTGGACC
GGGCTCCGCCCTCCACGTCGGCATCCTCCGAATGGCAAGATTTCCAGGCG
TTCCGGCGTACTTGGGCGGTAAGTCCCCAAAGGCTCTTCCTCGTCAAATA
CCTTTTCATCCAGGCCCTTGCTTCCGATGCGTATCACTTCGCGAGGTTCA
TAGCCAGCCATTGTCCGGGTCGGACCTCTGGCGCGGCCCTCCCTCTGTGT
TCGAGTCCCGCAGGCAGTGCGTTTCGATATCAGATGCCTGTCTGTTGGTC
TGGATGCACTTTGGATTTCATTCATTCGTAG
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Synonyms
Publications