EWM27764.1, cds2907 (CDS) Nannochloropsis gaditana

Overview
NameEWM27764.1
Unique Namecds2907
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:262506..263036 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27764.1
ProductTRAPP II complex, Trs120 protein
Orig transcript idgnl|cribi|Naga_100705g3.4005.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:262506..263036 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR013935TRAPP_II_complex_Trs120
Homology
BLAST of EWM27764.1 vs. NCBI_GenBank
Match: gi|585110042|gb|EWM27764.1| (TRAPP II complex, Trs120 protein [Nannochloropsis gaditana])

HSP 1 Score: 362.459 bits (929), Expect = 7.206e-127
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:    1 MNVLHHAEEEPNSFAAHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELPMANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQAFRRTWAVSPQRLFLVKYLFIQALASDAYHFARFIASHCPGRTSGAALPLCSSPAGSAFRYQMPVCWSGCTLDFIHS 176
            MNVLHHAEEEPNSFAAHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELPMANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQAFRRTWAVSPQRLFLVKYLFIQALASDAYHFARFIASHCPGRTSGAALPLCSSPAGSAFRYQMPVCWSGCTLDFIHS
Sbjct:    1 MNVLHHAEEEPNSFAAHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELPMANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQAFRRTWAVSPQRLFLVKYLFIQALASDAYHFARFIASHCPGRTSGAALPLCSSPAGSAFRYQMPVCWSGCTLDFIHS 176          
BLAST of EWM27764.1 vs. NCBI_GenBank
Match: gi|299115529|emb|CBN75733.1| (OSJNBa0029H02.30 [Ectocarpus siliculosus])

HSP 1 Score: 77.7962 bits (190), Expect = 1.421e-13
Identity = 34/89 (38.20%), Postives = 55/89 (61.80%), Query Frame = 0
Query:   16 AHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELPMANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQAFRRT 104
            +HR  +V +VPLG +P   +  Y  +LRR F  +PM NL+ PG W +++S  KHF+W +G     ++D+   +    S+W+D+QA+RR 
Sbjct:   14 SHRSAQVLLVPLGNIPPDVYAKYCEILRR-FSTIPMQNLTAPGDWNRQNSALKHFNWSEGCFNFHFIDQ-DTTDGGLSDWEDYQAYRRV 100          
BLAST of EWM27764.1 vs. NCBI_GenBank
Match: gi|330804027|ref|XP_003290001.1| (hypothetical protein DICPUDRAFT_154468 [Dictyostelium purpureum] >gi|325079899|gb|EGC33478.1| hypothetical protein DICPUDRAFT_154468 [Dictyostelium purpureum])

HSP 1 Score: 63.929 bits (154), Expect = 1.185e-8
Identity = 33/118 (27.97%), Postives = 66/118 (55.93%), Query Frame = 0
Query:   13 SFAAHRQLRVAVVPLGGVPGARFRVYLSLLRRSFHELPMANLSKPGSWKKESSPFKHFSWFDGNLLLQYLDRAPPSTSASSEWQDFQAFRRTWAV-------SPQRLFLVKYLFIQAL 123
            +F  +R ++V ++P+G +   +++ Y SL++     + +  LS     + ES+PF+  SW DG++LL ++D    S+   SE+++FQ +++ + V         + L + K LF QA+
Sbjct:    6 TFTENRSIKVIILPIGDISPEKYKEYTSLIK----TINIIELSSITRSQNESTPFEKISWVDGSMLLNFVD---ASSYQRSEYEEFQTYKKVFGVIGVVDCKKSKDLMVTKKLFEQAV 116          
The following BLAST results are available for this feature:
BLAST of EWM27764.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 3
Match NameE-valueIdentityDescription
gi|585110042|gb|EWM27764.1|7.206e-127100.00TRAPP II complex, Trs120 protein [Nannochloropsis ... [more]
gi|299115529|emb|CBN75733.1|1.421e-1338.20OSJNBa0029H02.30 [Ectocarpus siliculosus][more]
gi|330804027|ref|XP_003290001.1|1.185e-827.97hypothetical protein DICPUDRAFT_154468 [Dictyostel... [more]
back to top
Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2915rna2915Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications