rna2914, rna2914 (mRNA) Nannochloropsis gaditana

Overview
Namerna2914
Unique Namerna2914
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1757
Alignment locationCM002460.1:257676..259915 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100990g3.2729.mrna
Orig protein idgnl|cribi|Naga_100990g3.2729
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:257676..259915 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100990g3gene2795Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2914rna2914-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27767.1cds2906Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2914 ID=rna2914|Name=rna2914|organism=Nannochloropsis gaditana|type=mRNA|length=1757bp
ATGCCCCACTATCAGGCCTGGAGGAACATGGCCGATATCCTCCGTCCCGA
GGAAGCCAGGGCGGCAGGCCGCCCGGCTCAGACGTTCGAGGCCTACCCCG
GCTGGCACCTAGCCGATGGTTGGGAGACCGGGCGATTGATCGAGTCTCAA
AGCGGGCCCTTCGCCGTCACTATGGCCAAAAACAGGCATTTGGTCGTCTT
GATGCGTGGGAGCACTACAGACGAGGACTGGGCCGCGAATTTCAATTACC
CCTTCTGCGCCAACGAGTCGGCCGCGGCCATAGGCATCCCCGGGCGGGTT
CACCAGGGGTTCCTTGAGTACCTTATTGCCATTGCGCCCTTGCTGGACGC
TGAGGTGGAGCGAATCAAACCGCGACGAATTAGCCTCGCGGGGGACTCAG
TGGGAGGGGCCGTATCTGTGATCACTGGGGCGTACCTGGCTAGGAAGTAC
GCGTCAGGTTTAGACAGCAAGGTCGAGGTGATCGCGATAGGTAAGGCAAA
GGGGGCATCGGCTGAGCTGTTGTTCCCACAGGTCCCCGTCAAGCGTCTGC
AAATCCTACAACACCGCCCTTGCCTTCTTTTAACCTTTATGCTTTCAGGC
ACGCCACGCGTAGGAGACGACGTCTTCAGCAGCTTTTTTCGCGAGCACGT
TAACGGCCGCAGCCCCGCCTTCCTCGGGTCTGGGATTCGATTTCGAGGAA
AGGCCGTGGGATTCAATATGGTGTGGGAGATCGGTGATTTCGTGGTGCAG
GTCCCTTGGGACTGCTTCCCGGTGCCTGATTGCGTGGGAGGGAGCACCGA
GACCTACATGTACTCATATCATGGGGGGCTGATCAAAATCACCCCTCGGA
TGATGCCCAACGAAGACGGTTGGATGGAAGAGGCGAACTGGCTTGGGGAC
TTCAAGATCGGCTTTAAGGGAATGGTGGCCACGCACATGTGCAGCTACTG
GTGCTGGTAAGCGCAAGGAGAAACTTCGCGTTGGAGGGCTGGAGCAGAAT
CCCATATCTCACGATTCCTTATTCACTTTCTTTGGATTCCCCGCCCCCTT
TTCAGGGCCACGCGTGGGCTCCCTCCCCCCTACGAGGGCTCCAAGTGCTA
CTTTCCAAGTGACGTCAAGCACGTCGGTCCGGCCACCGACATATGCCTTT
CTGGGGCATAGGCGAGAGTGTGGGGAAGGAGGGGGGCGGTTCGACCATGC
CTGTTGGAAAACGGGCGTCGGGTGCTTAAAAAAAAGGGGGGGGAGGGGTA
AAAGAGAAGCGGATGAATCGCAGTGAGACGGGGCAAAGGATTGCGAGTAA
CGATTGGTTTTATGTAGGCATGATTGAGTCGAACGTACCACGAAAGAGTG
TCGCGTGGGCATGATTTGAAACAATAAAATGTGAATGAAAGACCAAAGGG
GATTCGCCAGTACGCACTTAGCGTTGGGAGCTTGGTGCTCTCTACCGTCC
CCAGGGAGTGGGAATGATGTGGATGCCTGCGTCTTGACGTGTCTGGGCAA
GAAACGGAAAAGGGCGTGCCACTTCTACAAAAGACATGGTAGAGAGATGA
AAGGCTTGGGACGTAACGTAATATAGCGCGAGATTGTGAACGCCGGGGGG
GGGAGGACTCGTTCCAAAGCAATGGGCGGTAAGTGGAAGAGGAGACCATT
TGTGGGGGTCGAAAAAGAATACATCGTAGAAAATGCAGCGCAGACAAACC
AGCGCGTGCTGTATCCATACGTATCAATCGAAGGCCCGTGTAGGAACGGA
AAGATCT
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protein sequence of rna2914

>rna2914-protein ID=rna2914-protein|Name=rna2914|organism=Nannochloropsis gaditana|type=polypeptide|length=240bp
NADPPPRPDPALAPSSSSISASSFTVLQPVSFPHASPRRARHPPSPPSSP
PFFPRSPGPAPSLPLALGDPPAAKPSTCTFPPYASIPIHFRVTNRSPTET
LPACKCFAHSYQDYGQGNLNFAIDSVRAMWSGSLAWTTPPLAPLDSHLHV
AFVSFTASGAYGVGWSVSYLPDEEGQGDGEGGGAGDGGAMPSSHADLGGC
AKEGVSSAEEKREPLLYWGQEAQVLVITEINGEDEMAKEH
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mRNA from alignment at CM002460.1:257676..259915-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2914 ID=rna2914|Name=rna2914|organism=Nannochloropsis gaditana|type=mRNA|length=2240bp|location=Sequence derived from alignment at CM002460.1:257676..259915- (Nannochloropsis gaditana)
AACGCGGACCCCCCCCCCCGCCCGGATCCCGCCCTCGCCCCGTCCTCCTC
CTCGATCTCCGCCTCCTCCTTCACAGTCCTGCAGCCAGTCTCTTTCCCTC
ACGCCTCGCCCCGCCGGGCCCGACATCCTCCCTCCCCGCCCTCCTCCCCA
CCCTTCTTTCCTCGCTCCCCCGGCCCCGCTCCCTCTCTCCCTCTCGCCCT
CGGCGATCCGCCCGCTGCCAAGCCCTCTACCTGTACCTTCCCCCCTTATG
CCTCCATCCCCATCCACTTTCGCGTCACCAACCGCTCCCCGACGGAAACG
CTCCCCGCCTGCAAGTGCTTCGCTCACTCCTACCAAGACTATGGACAGGT
AGGTTCGAAATCTTCTGCTTCCCAAGTCCCCCCCCTTAGCTCCGGCGGCG
CCGACAACCCGTCTGCTCGCCCTCGCAGCCGCCTGCAGATTTTGTATGCA
CTCACCTCATTTCCGATACTTCCTTCTCACCCCTTTTGACGAGCCATCCT
CCGCGAGCGCGCCACTCACCCTCCCTCGTACCCCCCCCCACAGGGAAACC
TTAACTTCGCCATCGACTCGGTTCGCGCCATGTGGTCAGGGAGCTTGGCC
TGGACGACCCCTCCCCTCGCGCCGCTGGACTCTCACTTGCACGTGGCCTT
CGTGAGTTTCACGGCGTCGGGGGCCTACGGTGTGGGGTGGAGCGTGTCCT
ACCTTCCCGACGAGGAGGGGCAGGGGGATGGGGAGGGAGGGGGGGCAGGC
GACGGAGGTGCCATGCCATCGTCCCATGCGGATTTGGGCGGGTGTGCGAA
GGAGGGGGTGTCAAGCGCGGAGGAGAAGAGGGAGCCGTTGCTGTACTGGG
GCCAGGAGGCGCAGGTGCTGGTGATCACGGAGATTAATGGGGAAGACGAG
ATGGCCAAGGAGCATTGAGGAGTGGCATCGGGGGGCTGATGAAGCAACGA
TTGACATCGAGTGCGAACTCAATGCTTTGAAGCATGGGTGGACGCAATTT
GCGGTTATACCAAAGTGTACAAATGAATACAGCAGACAGATATGTCAGAG
ACAAATAAGCTGGGACAAGCCCAACACATGACTTTACTCGCTTCTTCTTT
TTGATGTCATCTTCGAGCACAATGTTTATCAGATAGGCGTGGCCCCGCTT
ATTTGAGCCAAAATGTAGCGGCATCATCTCAAGAGAGCAAGAGCACGGAT
AGATGGTCCTCGTAAAATTTTCACTTCCTGTATTGAGGACAAGTGCACAC
CACGGACTGAACTAGACACCGGAAGGTAAACGCCTCCGTTCTCGCTATGG
AGCATTAAAGTCGATTCTCTCGCTCGAACAAAAAATATTAATCTAGTTTC
TCCTCAAGGGGGTATGACTTCCATATTTTGACGCCCATCATGCAATTTAT
GCGGTATCGGAGTGGGCGGAGAGGGGGAGGAGGTTGAAAGCTTCTTCCTT
CATGTCTTCGGGACCTTTACATTCACTCAAACACTTTGCCATCGGCCCTC
AGGCATGTCCATCTCGACCTCTATACTATGTATCTCCCCCCTAAGTTAGA
AATAAAGCCGGGGCTTTGTTATTACTTTCCTGGACAGGTATTGGGAAGGC
ACGGGGGACAAGGCAAGGACCAAATTTACCTCCTCCTTCCCCGGCCCGCC
CCTGTATTTTGTTCGGATGGCCGCATTCAACGATCATGATTTTTCGTTTT
TTTAATGCACGCACTTCATTTCCCCAAAAAAACATGAACAGTGGTGCTGC
GGGATATATGGAACCTTCGTCGCCACCTTTTCGAAAGCCGCCGGCACCAC
TCGACGACGCCCATCCTATAACCGGTCTTCGCGAGGCTATACGAGCCCTC
AACCAAGTCGATGACGCGATGATGGCTTACGATAACAAACTTACGATTCC
GTCTGTGACCAGGTCTCTCGATGCCTTCGTGCAGGCATTGAAAAAGGTAC
AGGACGGACGGCATGTCTTCGGCGACGAAGACATTCCGTTAGACCTGTTG
GAGCGCATAGAGAAGGAGGGTCTCAACCCTGATGTGTACACGATTGAGCG
TCTAGAAAAGGGCTTGGAGGACTTGGAGGCGGTTGCGCTCAGGGATCAAC
TGCTGGAGGAAATCAAAGAGGGTATGAAAGCAGGTATGAAGCGGAAAGAG
CGAAATGACCCCGAGACACAAAAGAGCACGATAGTTGTCAAGGAGGAAGA
CTCGTGAAAAGAAAAATTCCAACGAGCGCAACCGTATGCT
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Coding sequence (CDS) from alignment at CM002460.1:257676..259915-

>rna2914 ID=rna2914|Name=rna2914|organism=Nannochloropsis gaditana|type=CDS|length=1446bp|location=Sequence derived from alignment at CM002460.1:257676..259915- (Nannochloropsis gaditana)
GGAAACCTTAACTTCGCCATCGACTCGGTTCGCGCCATGTGGTCAGGGAG
CTTGGCCTGGACGACCCCTCCCCTCGCGCCGCTGGACTCTCACTTGCACG
TGGCCTTCGTGAGTTTCACGGCGTCGGGGGCCTACGGTGTGGGGTGGAGC
GTGTCCTACCTTCCCGACGAGGAGGGGCAGGGGGATGGGGAGGGAGGGGG
GGCAGGCGACGGAGGTGCCATGCCATCGTCCCATGCGGATTTGGGCGGGT
GTGCGAAGGAGGGGGTGTCAAGCGCGGAGGAGAAGAGGGAGCCGTTGCTG
TACTGGGGCCAGGAGGCGCAGGTGCTGGTGATCACGGAGATTAATGGGGA
AGACGAGATGGCCAAGGAGCATTGAAACGCGGACCCCCCCCCCCGCCCGG
ATCCCGCCCTCGCCCCGTCCTCCTCCTCGATCTCCGCCTCCTCCTTCACA
GTCCTGCAGCCAGTCTCTTTCCCTCACGCCTCGCCCCGCCGGGCCCGACA
TCCTCCCTCCCCGCCCTCCTCCCCACCCTTCTTTCCTCGCTCCCCCGGCC
CCGCTCCCTCTCTCCCTCTCGCCCTCGGCGATCCGCCCGCTGCCAAGCCC
TCTACCTGTACCTTCCCCCCTTATGCCTCCATCCCCATCCACTTTCGCGT
CACCAACCGCTCCCCGACGGAAACGCTCCCCGCCTGCAAGTGCTTCGCTC
ACTCCTACCAAGACTATGGACAGGGAAACCTTAACTTCGCCATCGACTCG
GTTCGCGCCATGTGGTCAGGGAGCTTGGCCTGGACGACCCCTCCCCTCGC
GCCGCTGGACTCTCACTTGCACGTGGCCTTCGTGAGTTTCACGGCGTCGG
GGGCCTACGGTGTGGGGTGGAGCGTGTCCTACCTTCCCGACGAGGAGGGG
CAGGGGGATGGGGAGGGAGGGGGGGCAGGCGACGGAGGTGCCATGCCATC
GTCCCATGCGGATTTGGGCGGGTGTGCGAAGGAGGGGGTGTCAAGCGCGG
AGGAGAAGAGGGAGCCGTTGCTGTACTGGGGCCAGGAGGCGCAGGTGCTG
GTGATCACGGAGATTAATGGGGAAGACGAGATGGCCAAGGAGCATTGAAA
CGCGGACCCCCCCCCCCGCCCGGATCCCGCCCTCGCCCCGTCCTCCTCCT
CGATCTCCGCCTCCTCCTTCACAGTCCTGCAGCCAGTCTCTTTCCCTCAC
GCCTCGCCCCGCCGGGCCCGACATCCTCCCTCCCCGCCCTCCTCCCCACC
CTTCTTTCCTCGCTCCCCCGGCCCCGCTCCCTCTCTCCCTCTCGCCCTCG
GCGATCCGCCCGCTGCCAAGCCCTCTACCTGTACCTTCCCCCCTTATGCC
TCCATCCCCATCCACTTTCGCGTCACCAACCGCTCCCCGACGGAAACGCT
CCCCGCCTGCAAGTGCTTCGCTCACTCCTACCAAGACTATGGACAG
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Synonyms
Publications