EWM27767.1, cds2906 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27767.1
Unique Name	cds2906
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:259568..259915 -
Alignment location	CM002460.1:258998..259372 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27767.1
Product	hypothetical protein
Partial	true
Orig transcript id	gnl\|cribi\|Naga_100990g3.2729.mrna
Gbkey	CDS
End range	.
End range	259915

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:259568..259915 -
CM002460.1	supercontig	CM002460.1:258998..259372 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

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BLAST of EWM27767.1 vs. NCBI_GenBank
Match: gi|585110047|gb|EWM27767.1| (hypothetical protein Naga_100990g3, partial [Nannochloropsis gaditana])

HSP 1 Score: 482.641 bits (1241), Expect = 2.408e-172
Identity = 240/240 (100.00%), Postives = 240/240 (100.00%), Query Frame = 0

Query:    1 NADPPPRPDPALAPSSSSISASSFTVLQPVSFPHASPRRARHPPSPPSSPPFFPRSPGPAPSLPLALGDPPAAKPSTCTFPPYASIPIHFRVTNRSPTETLPACKCFAHSYQDYGQGNLNFAIDSVRAMWSGSLAWTTPPLAPLDSHLHVAFVSFTASGAYGVGWSVSYLPDEEGQGDGEGGGAGDGGAMPSSHADLGGCAKEGVSSAEEKREPLLYWGQEAQVLVITEINGEDEMAKEH 240
            NADPPPRPDPALAPSSSSISASSFTVLQPVSFPHASPRRARHPPSPPSSPPFFPRSPGPAPSLPLALGDPPAAKPSTCTFPPYASIPIHFRVTNRSPTETLPACKCFAHSYQDYGQGNLNFAIDSVRAMWSGSLAWTTPPLAPLDSHLHVAFVSFTASGAYGVGWSVSYLPDEEGQGDGEGGGAGDGGAMPSSHADLGGCAKEGVSSAEEKREPLLYWGQEAQVLVITEINGEDEMAKEH
Sbjct:    1 NADPPPRPDPALAPSSSSISASSFTVLQPVSFPHASPRRARHPPSPPSSPPFFPRSPGPAPSLPLALGDPPAAKPSTCTFPPYASIPIHFRVTNRSPTETLPACKCFAHSYQDYGQGNLNFAIDSVRAMWSGSLAWTTPPLAPLDSHLHVAFVSFTASGAYGVGWSVSYLPDEEGQGDGEGGGAGDGGAMPSSHADLGGCAKEGVSSAEEKREPLLYWGQEAQVLVITEINGEDEMAKEH 240

The following BLAST results are available for this feature:

BLAST of EWM27767.1 vs. NCBI_GenBank

BLAST of EWM27767.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110047\|gb\|EWM27767.1\|	2.408e-172	100.00	hypothetical protein Naga_100990g3, partial [Nanno...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2914	rna2914	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications