rna2909, rna2909 (mRNA) Nannochloropsis gaditana

Overview
Namerna2909
Unique Namerna2909
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1315
Alignment locationCM002460.1:240757..242439 -

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Properties
Property NameValue
Producttranslation initiation factor if-3
Orig transcript idgnl|cribi|Naga_100187g3.5309.mrna
Orig protein idgnl|cribi|Naga_100187g3.5309
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:240757..242439 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100187g3gene2788Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2909rna2909-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27775.1cds2901Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2909 ID=rna2909|Name=rna2909|organism=Nannochloropsis gaditana|type=mRNA|length=1315bp
TCCTCGCTGACATTCGGGGTCGTGACCAAAACGCGCTCGACCCGCGTCCA
GGTCCGCTATTTTCGTCGTTCTTGCGTGTTCTCTTTGGGAAATATAGATA
GCGTGAGTAGAGGCCACTGAATTCTGTTCTTCTGACACTTATTCACACCC
TGCTTACACCCTACCTCCCCTCACTTCCTTCTCTTTGTCCTCGTCAAAAT
ACCACCCCATGTACCCCCTAACCCGTCACGTAAACAAGTGACCAAGCATG
GGCATCGCAGGCTTGCTTCCGTTGCTGAAATCAGTGACGCACACCGTACA
TTTGCGAGAGTATCAGGGAATGATGGCGGGAATCGACGCTTTCTGTTGGC
TGCACCGTGGTGCCTTTACATGTTGTACGGAGCTCGTGCTCGGTAAAACC
ACAGACAAATATATTCGTTTCTGTATGGAACGTGTACGCATTTTGCAGGA
GAATGGGATCACGCCATTCATGGTATTTGATGGAGCTAGCATTCCGGCCA
AGCGCGACTTGCATCTCTCCCGACGAGCAGCTCGAACAGAAGCACGAGCC
AAGGCGTTGGCAGTGCACGAGGAAGGGCAAATCGGACAGGCACGTACGTT
GTTTCAAAAAGCTGTCATTATCACCCATGAAATGGCCTACGAATTGATCA
AGTGCCTGCAAGAAGCGAACGTCCGGTACATGGTGGCACCGTACGAGGCA
GACGCGCAATTGGCCTATTTGGCGCGAAAAGGCGTGGTGGACCTTGTCAT
CAGCGAAGACTCGGACACACTCCCCTACGGCTGCCCCCGCGTGCTCTTTA
AATTGGACAAGGAAGGGCGCGCGCAAGAGATCGAGCGTCGAAACTTGGCG
CTGAACGAAGACTACGATTTCGAAGGGTGGACAGAGAACATGTTCCTTGA
CATGTGCCTGTTGGCCGGCTGCGACTACCTGCCTAACCTGCCCGGTCTGG
GCATCAAGACCGCACACAAGCTGGTCCGACAGCATCGCACGTACAAGAAG
GTCCTTGGGGCCTTGGCGACCCCGGGAGGCAAGGAGATGGCGGTTCCCGG
CGACTACATGGAACGCTTTGCCCGTGCCCGCTTGACCTTCCGCCACCATT
ACGTCTACGACCCGGAGGACGGTGGCATCGTCCCCCTCACGCCTTTTACC
CCGGCGCACTTGGAGCTGGATTTGCGCTTTCTGGGGCCGCGGCATGCGCC
GGAGCTGGCACGGGCCGTGGCGGAGGGACGCCTGAACCCAGACACTTTAC
AGGCCTACGCGGGGTCGGAAGGGGAGAGGCCAGGGCTGCCTTACCCTCCA
CGCGACGGAGACTGA
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protein sequence of rna2909

>rna2909-protein ID=rna2909-protein|Name=rna2909|organism=Nannochloropsis gaditana|type=polypeptide|length=335bp
MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQH
KRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPT
HVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRN
RWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALA
KAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVK
EVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHEL
LGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV
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mRNA from alignment at CM002460.1:240757..242439-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2909 ID=rna2909|Name=rna2909|organism=Nannochloropsis gaditana|type=mRNA|length=1683bp|location=Sequence derived from alignment at CM002460.1:240757..242439- (Nannochloropsis gaditana)
GACGGATCGGTAGTGGTGGGACCGTGTTAAGCACGAATGTTTAGTATACC
CAGTAAACAAGCATACTCCTCAGCCATATGCTTAGTTGTACGTCATTCGG
GCGCCTCTGGTCGCATGGTTTGATTTTGCTGGTCCCTGGTATCAATCAGA
CCTGGGGCGGCCAAATATCCATTCTGTCCCACACAGTCAAGCTTTACCAA
TACCTTCCCAAAATCTTTCCACAACATAAAAGGCCCGGTAGATACAGAAG
GAGCACACGAAGGAGGCACACTATGCAGTTCAGCCCCCTCCGTCCCAGCA
GATCGCTGGTGACACTCTGTCTGACTCTTGGCTTTATGTACCTGGTACGT
ACAGAGCGAGAAGGAGATGGTGTGTGCAATTTATGCTGTGGCGCACGTGA
AGTGCCTGATAAAGAGCGCGTCGATAAGGATGGTGTTGGGGGTAGCAAGG
AAGAGATTCATGTCCCCTTGCGATCTGCAGGTGGTTGGTCGTCGTGTCCT
GTTGTTTGCTGATCATCTGACCTTTTGAGTCGAAAGGCTACCAGGGGAGG
AGAAACCCCAGGGTCTCTCGCCTGTGCCACTTGTATGGCTTCTGCTGGCA
TTTGAGCCTAGTGTCCACCGCTAGGCCCATAAGGCCTGATACCTCTGCCT
TCCGCGGGTGTGGCTGCCACTTTTGAGGGAGACGCAGGATCCTTGCATGT
TCCTGGGCCCCGACCACGCGCTTCGATGCCTCACTCTCACTATTCTCCCG
TCCCCTCTCTCCCCTTGTCATACCTCCCCGGCATAGGTCACGGCCTTCCA
CGCGCCTTTTCTCCCCACCCACGTCAGTCGTTCCTCCTTGTCCATGCCAT
CCCCAATAAGATGCTACAGCACACGTCCCCCGTCCCCCCGCCCTCCTGGA
AATGGCGGCGGACCGAGCCGGCCCCCATTTCGCCCGAATTCTCCCCGACC
GAGTGGGGGTGGCCGCAACCGTTGGGGCCCGCCTGAGGTTGACCCGAACA
AGCCGCCGATGAACGACGCCTTGCTGCGCATGGCGCCCGGGAATGTGCGG
GTGGTGATTTCGAACCCGGAGGACGGGGACGAGATGGCGGGGGTGATGGC
GACCACGGAGGCGCTGGCCAAAGCGAAGGAGATGGGCTTGGACCTGATCA
TGATCAGTGAGACGGCTGACCCGCCCGTGGTCAAGATTATCGACTACGGG
AAGTTCAAGTACTCGTTGGAGAAGAAGAAGAAGGAGCAGAAGAAGAAGGC
GAAGACGACGGAGGTAAAGGAGGTGAAAATGTCCTACAAGATCGAGAACC
ACGACTACGGCGTGAGGATGAAGCAAATGACCCGCTTCCTGGACGAGGGG
GACAAGGTCAAGGTGATGATTCAGTTTCGAGGGCGGGAGCAGCAACACAT
AGATTTGGGTCACGAACTTTTGGGCAAGGTGGGGGGAGACCTGAAGGAGT
TGGCGGTGCAGGAAGGGGTCGTGAGGAGGGAGGGTGGACGGTTGATTGCC
CTGTTTAAGCCAAAGAAGACGGTGTAAATGGAGGGAAGTGGAGGAGGACG
GGGGAGCGAGGGGGGGGGGCGGGGGGCCATGGTAAGAGTAGGGGAAGTGT
TGGGAGTGCGCTTGTACCCTCTGTCGCACCCTTCGGCCGGAGAAAGGGTG
TCAGAAAAGCGGGAAAAAAAAATTGAGGTGAGA
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Coding sequence (CDS) from alignment at CM002460.1:240757..242439-

>rna2909 ID=rna2909|Name=rna2909|organism=Nannochloropsis gaditana|type=CDS|length=2016bp|location=Sequence derived from alignment at CM002460.1:240757..242439- (Nannochloropsis gaditana)
GTCACGGCCTTCCACGCGCCTTTTCTCCCCACCCACGTCAGTCGTTCCTC
CTTGTCCATGCCATCCCCAATAAGATGCTACAGCACACGTCCCCCGTCCC
CCCGCCCTCCTGGAAATGGCGGCGGACCGAGCCGGCCCCCATTTCGCCCG
AATTCTCCCCGACCGAGTGGGGGTGGCCGCAACCGTTGGGGCCCGCCTGA
GGTTGACCCGAACAAGCCGCCGATGAACGACGCCTTGCTGCGCATGGCGC
CCGGGAATGTGCGGGTGGTGATTTCGAACCCGGAGGACGGGGACGAGATG
GCGGGGGTGATGGCGACCACGGAGGCGCTGGCCAAAGCGAAGGAGATGGG
CTTGGACCTGATCATGATCAGTGAGACGGCTGACCCGCCCGTGGTCAAGA
TTATCGACTACGGGAAGTTCAAGTACTCGTTGGAGAAGAAGAAGAAGGAG
CAGAAGAAGAAGGCGAAGACGACGGAGGTAAAGGAGGTGAAAATGTCCTA
CAAGATCGAGAACCACGACTACGGCGTGAGGATGAAGCAAATGACCCGCT
TCCTGGACGAGGGGGACAAGGTCAAGGTGATGATTCAGTTTCGAGGGCGG
GAGCAGCAACACATAGATTTGGGTCACGAACTTTTGGGCAAGGTGGGGGG
AGACCTGAAGGAGTTGGCGGTGCAGGAAGGGGTCGTGAGGAGGGAGGGTG
GACGGTTGATTGCCCTGTTTAAGCCAAAGAAGACGGTGTAAATGCTTAGT
TGTACGTCATTCGGGCGCCTCTGGTCGCATGGTTTGATTTTGCTGGTCCC
TGGTATCAATCAGACCTGGGGCGGCCAAATATCCATTCTGTCCCACACAG
TCAAGCTTTACCAATACCTTCCCAAAATCTTTCCACAACATAAAAGGCCC
GGTAGATACAGAAGGAGCACACGAAGGAGGCACACTATGCAGTTCAGCCC
CCTCCGTCCCAGCAGATCGCTGGTGACACTCTGTCTGACTCTTGGCTTTA
TGTACCTGGTCACGGCCTTCCACGCGCCTTTTCTCCCCACCCACGTCAGT
CGTTCCTCCTTGTCCATGCCATCCCCAATAAGATGCTACAGCACACGTCC
CCCGTCCCCCCGCCCTCCTGGAAATGGCGGCGGACCGAGCCGGCCCCCAT
TTCGCCCGAATTCTCCCCGACCGAGTGGGGGTGGCCGCAACCGTTGGGGC
CCGCCTGAGGTTGACCCGAACAAGCCGCCGATGAACGACGCCTTGCTGCG
CATGGCGCCCGGGAATGTGCGGGTGGTGATTTCGAACCCGGAGGACGGGG
ACGAGATGGCGGGGGTGATGGCGACCACGGAGGCGCTGGCCAAAGCGAAG
GAGATGGGCTTGGACCTGATCATGATCAGTGAGACGGCTGACCCGCCCGT
GGTCAAGATTATCGACTACGGGAAGTTCAAGTACTCGTTGGAGAAGAAGA
AGAAGGAGCAGAAGAAGAAGGCGAAGACGACGGAGGTAAAGGAGGTGAAA
ATGTCCTACAAGATCGAGAACCACGACTACGGCGTGAGGATGAAGCAAAT
GACCCGCTTCCTGGACGAGGGGGACAAGGTCAAGGTGATGATTCAGTTTC
GAGGGCGGGAGCAGCAACACATAGATTTGGGTCACGAACTTTTGGGCAAG
GTGGGGGGAGACCTGAAGGAGTTGGCGGTGCAGGAAGGGGTCGTGAGGAG
GGAGGGTGGACGGTTGATTGCCCTGTTTAAGCCAAAGAAGACGGTGTAAA
TGCTTAGTTGTACGTCATTCGGGCGCCTCTGGTCGCATGGTTTGATTTTG
CTGGTCCCTGGTATCAATCAGACCTGGGGCGGCCAAATATCCATTCTGTC
CCACACAGTCAAGCTTTACCAATACCTTCCCAAAATCTTTCCACAACATA
AAAGGCCCGGTAGATACAGAAGGAGCACACGAAGGAGGCACACTATGCAG
TTCAGCCCCCTCCGTCCCAGCAGATCGCTGGTGACACTCTGTCTGACTCT
TGGCTTTATGTACCTG
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Synonyms
Publications