EWM27775.1, cds2901 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|585110058|gb|EWM27775.1| (translation initiation factor if-3 [Nannochloropsis gaditana]) HSP 1 Score: 687.952 bits (1774), Expect = 0.000e+0 Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0 Query: 1 MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335 MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV Sbjct: 1 MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|553188310|ref|XP_005854774.1| (hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526] >gi|422294290|gb|EKU21590.1| hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526]) HSP 1 Score: 360.918 bits (925), Expect = 9.297e-121 Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0 Query: 89 LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG 264 LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG Sbjct: 182 LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG 357
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|299117169|emb|CBN75133.1| (conserved unknown protein [Ectocarpus siliculosus]) HSP 1 Score: 172.94 bits (437), Expect = 2.976e-48 Identity = 90/173 (52.02%), Postives = 121/173 (69.94%), Query Frame = 0 Query: 162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334 P MN+ + VR VIS + DE G+M+T +AL +A + GLDL+MI++ A PPVVKIIDYGKFKY +++KK+ K K K TE+KEVKMSYKIE HDY VR++ +F+ +G +V++++ FRGREQ H+DLG+ LL KV DL+ LA+ E RREG RL + PK T Sbjct: 117 PDMNEEIAASGIEEVRCVIS-VKGMDEQLGIMSTQQALQRASDEGLDLVMITKDAQPPVVKIIDYGKFKYKRDRRKKDNKAKHKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVEP-KRREGNRLSMIVFPKPT 287
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|219117177|ref|XP_002179383.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409274|gb|EEC49206.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1]) HSP 1 Score: 165.236 bits (417), Expect = 1.785e-46 Identity = 87/177 (49.15%), Postives = 117/177 (66.10%), Query Frame = 0 Query: 157 VDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMG-LDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPK 332 V KP MN + +RVV P DE G+M+ EALAKAKEMG LDLI+++ +DPPV KI+DY K++Y LEKK KE KK +K TE+KEVKMSYKI+ HDY VR K ++FL +G++VK + FRGRE QH +LG +LL ++ +L+E + E +REG L + P+ Sbjct: 13 VQEKKPTMNGEI---ENRELRVVTPTPLGKDEPLGIMSRDEALAKAKEMGGLDLILVNNNSDPPVCKIVDYSKYRYQLEKKAKEVKKNSKGTEIKEVKMSYKIDVHDYSVRKKSASKFLKQGNRVKCTVMFRGREVQHDNLGFDLLNRLASELEEYCMTESKPKREGRNLSLILTPR 186
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1200359954|gb|OUU79415.1| (translation initiation factor IF-3 [Hyphomicrobiaceae bacterium TMED74]) HSP 1 Score: 160.999 bits (406), Expect = 5.565e-45 Identity = 88/180 (48.89%), Postives = 117/180 (65.00%), Query Frame = 0 Query: 153 GPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPK 332 GPPE + P MNDA+ VR V DGD GV++T AL A+ +GLDL+ +S A+PPV KI+DYGK+KY +KK E +KK KT EVKE+KM I+NHDY V+M+ M RF D+GDKVKV ++FRGRE H LG ELL KV +++E+A E R EG +++ + P+ Sbjct: 7 GPPEREQAGPRMNDAI------RVREVRLIDADGDN-KGVVSTEAALENARAVGLDLVEVSPDANPPVCKILDYGKYKYQEQKKAAEARKKQKTVEVKEIKMRPNIDNHDYDVKMRSMKRFFDDGDKVKVTLRFRGREMAHQQLGRELLLKVRAEIEEIAKVESEPRLEGRQMVMVLAPR 179
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1208982382|ref|WP_088243515.1| (translation initiation factor IF-3 [Calothrix rhizosoleniae]) HSP 1 Score: 160.614 bits (405), Expect = 6.216e-45 Identity = 80/159 (50.31%), Postives = 113/159 (71.07%), Query Frame = 0 Query: 175 NVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333 +RV+ + DG+++ G+MA EAL A+E LDL+++S+ ADPPV +I+DYGK+K+ EKK +E +KK T +VKEVKM YKI++HDY VR+KQ RFL +GDKVK + FRGRE QH DL H+LL ++ DL+E+ + +REG ++ L PKK Sbjct: 23 TIRVIAT---DGEQL-GIMAPQEALQIAEERELDLVLLSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIDDHDYKVRVKQAVRFLKDGDKVKATVMFRGREIQHSDLAHKLLKRMAADLEEVGEVQQAPKREGRNMMILISPKK 177
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|754157427|ref|WP_041779871.1| (translation initiation factor IF-3 [Microcoleus sp. PCC 7113]) HSP 1 Score: 159.073 bits (401), Expect = 3.175e-44 Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 0 Query: 162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333 PP+N+ R+ N+RV+ + DG ++ G++ EAL A+E LDL+++S+ ADPPV +I+DYGK+K+ EKK +E +KK T +VKEVKM YKIE HDY VR+ Q RFL GDKVK I FRGRE QH DL +LL ++ DL+ELA + + +REG ++ L PKK Sbjct: 14 PPINE---RIRFPNIRVIDT---DGGQL-GIITPQEALRIAEEKELDLVLVSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIEEHDYQVRVNQAERFLKSGDKVKATITFRGREIQHSDLAEDLLKRMAMDLEELAEVQQLPKREGRNMMMLLSPKK 178
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1101262759|ref|WP_071515676.1| (translation initiation factor IF-3 [Geitlerinema sp. PCC 9228]) HSP 1 Score: 159.073 bits (401), Expect = 4.191e-44 Identity = 79/159 (49.69%), Postives = 112/159 (70.44%), Query Frame = 0 Query: 176 VRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334 VRV+ + DG+++ GVM+T +A+A A E LDL+++S+ ADPPV +++DYGK+K+ EK+ +E KKK EVKEVKM Y+IE HDY VR+ Q RFL +GDKVK + FRGRE QH +L ELL ++ GDL+E+A + +REG ++ + PKK Sbjct: 25 VRVIDT---DGEQL-GVMSTRDAVAIASEKELDLVLVSDKADPPVCRVMDYGKYKFEQEKRAREAKKKQHAAEVKEVKMRYQIEEHDYKVRLNQAQRFLKDGDKVKATVMFRGREIQHTNLAKELLERLAGDLEEVAEIQQRPKREGRSMMMMLSPKKA 179
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|428250601|gb|AFZ16560.1| (bacterial translation initiation factor 3 (bIF-3) [Microcoleus sp. PCC 7113]) HSP 1 Score: 158.303 bits (399), Expect = 4.451e-44 Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 0 Query: 162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333 PP+N+ R+ N+RV+ + DG ++ G++ EAL A+E LDL+++S+ ADPPV +I+DYGK+K+ EKK +E +KK T +VKEVKM YKIE HDY VR+ Q RFL GDKVK I FRGRE QH DL +LL ++ DL+ELA + + +REG ++ L PKK Sbjct: 11 PPINE---RIRFPNIRVIDT---DGGQL-GIITPQEALRIAEEKELDLVLVSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIEEHDYQVRVNQAERFLKSGDKVKATITFRGREIQHSDLAEDLLKRMAMDLEELAEVQQLPKREGRNMMMLLSPKK 175
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|516257451|ref|WP_017661414.1| (translation initiation factor IF-3 [Geitlerinema sp. PCC 7105]) HSP 1 Score: 158.303 bits (399), Expect = 5.793e-44 Identity = 77/147 (52.38%), Postives = 104/147 (70.75%), Query Frame = 0 Query: 188 EMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334 E G+M+ +AL A+E LDL+++S+ ADPPV +I+DYGK+K+ EK+ KE KKK ++E+KEVKM YKIE+HDY VR+KQ RFL GDKVK + FRGRE QH DL +LL ++ DL +LA + +REG ++ L PKKT Sbjct: 32 EQLGIMSPADALKIAEEKDLDLVLVSDKADPPVCRIMDYGKYKFEQEKRSKEAKKKQHSSELKEVKMRYKIEDHDYQVRVKQAVRFLKAGDKVKATVMFRGREIQHTDLAQQLLERLAKDLTDLAEVQQRPKREGRSMMMLLSPKKT 178 The following BLAST results are available for this feature:
BLAST of EWM27775.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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