EWM27775.1, cds2901 (CDS) Nannochloropsis gaditana

Overview
NameEWM27775.1
Unique Namecds2901
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:242096..242362 -
Alignment locationCM002460.1:240913..241653 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27775.1
Producttranslation initiation factor if-3
Orig transcript idgnl|cribi|Naga_100187g3.5309.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:242096..242362 -
CM002460.1supercontigCM002460.1:240913..241653 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0008135translation factor activity, RNA binding
GO:0003743translation initiation factor activity
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: Biological Process
TermDefinition
GO:0006413translational initiation
Vocabulary: INTERPRO
TermDefinition
IPR001288Translation_initiation_fac_3
IPR019815Translation_initiation_fac_3_C
IPR019814Translation_initiation_fac_3_N
Homology
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|585110058|gb|EWM27775.1| (translation initiation factor if-3 [Nannochloropsis gaditana])

HSP 1 Score: 687.952 bits (1774), Expect = 0.000e+0
Identity = 335/335 (100.00%), Postives = 335/335 (100.00%), Query Frame = 0
Query:    1 MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335
            MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV
Sbjct:    1 MLSCTSFGRLWSHGLILLVPGINQTWGGQISILSHTVKLYQYLPKIFPQHKRPGRYRRSTRRRHTMQFSPLRPSRSLVTLCLTLGFMYLVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKTV 335          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|553188310|ref|XP_005854774.1| (hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526] >gi|422294290|gb|EKU21590.1| hypothetical protein NGA_0369010, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 360.918 bits (925), Expect = 9.297e-121
Identity = 176/176 (100.00%), Postives = 176/176 (100.00%), Query Frame = 0
Query:   89 LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG 264
            LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG
Sbjct:  182 LVTAFHAPFLPTHVSRSSLSMPSPIRCYSTRPPSPRPPGNGGGPSRPPFRPNSPRPSGGGRNRWGPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYG 357          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|299117169|emb|CBN75133.1| (conserved unknown protein [Ectocarpus siliculosus])

HSP 1 Score: 172.94 bits (437), Expect = 2.976e-48
Identity = 90/173 (52.02%), Postives = 121/173 (69.94%), Query Frame = 0
Query:  162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334
            P MN+ +       VR VIS  +  DE  G+M+T +AL +A + GLDL+MI++ A PPVVKIIDYGKFKY  +++KK+ K K K TE+KEVKMSYKIE HDY VR++   +F+ +G +V++++ FRGREQ H+DLG+ LL KV  DL+ LA+ E   RREG RL  +  PK T
Sbjct:  117 PDMNEEIAASGIEEVRCVIS-VKGMDEQLGIMSTQQALQRASDEGLDLVMITKDAQPPVVKIIDYGKFKYKRDRRKKDNKAKHKATEMKEVKMSYKIETHDYMVRLRNAQKFVKQGHRVRIVVTFRGREQSHMDLGNVLLDKVTNDLEGLALVEP-KRREGNRLSMIVFPKPT 287          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|219117177|ref|XP_002179383.1| (predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1] >gi|217409274|gb|EEC49206.1| predicted protein, partial [Phaeodactylum tricornutum CCAP 1055/1])

HSP 1 Score: 165.236 bits (417), Expect = 1.785e-46
Identity = 87/177 (49.15%), Postives = 117/177 (66.10%), Query Frame = 0
Query:  157 VDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMG-LDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPK 332
            V   KP MN  +       +RVV   P   DE  G+M+  EALAKAKEMG LDLI+++  +DPPV KI+DY K++Y LEKK KE KK +K TE+KEVKMSYKI+ HDY VR K  ++FL +G++VK  + FRGRE QH +LG +LL ++  +L+E  + E   +REG  L  +  P+
Sbjct:   13 VQEKKPTMNGEI---ENRELRVVTPTPLGKDEPLGIMSRDEALAKAKEMGGLDLILVNNNSDPPVCKIVDYSKYRYQLEKKAKEVKKNSKGTEIKEVKMSYKIDVHDYSVRKKSASKFLKQGNRVKCTVMFRGREVQHDNLGFDLLNRLASELEEYCMTESKPKREGRNLSLILTPR 186          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1200359954|gb|OUU79415.1| (translation initiation factor IF-3 [Hyphomicrobiaceae bacterium TMED74])

HSP 1 Score: 160.999 bits (406), Expect = 5.565e-45
Identity = 88/180 (48.89%), Postives = 117/180 (65.00%), Query Frame = 0
Query:  153 GPPEVDPNKPPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPK 332
            GPPE +   P MNDA+       VR V     DGD   GV++T  AL  A+ +GLDL+ +S  A+PPV KI+DYGK+KY  +KK  E +KK KT EVKE+KM   I+NHDY V+M+ M RF D+GDKVKV ++FRGRE  H  LG ELL KV  +++E+A  E   R EG +++ +  P+
Sbjct:    7 GPPEREQAGPRMNDAI------RVREVRLIDADGDN-KGVVSTEAALENARAVGLDLVEVSPDANPPVCKILDYGKYKYQEQKKAAEARKKQKTVEVKEIKMRPNIDNHDYDVKMRSMKRFFDDGDKVKVTLRFRGREMAHQQLGRELLLKVRAEIEEIAKVESEPRLEGRQMVMVLAPR 179          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1208982382|ref|WP_088243515.1| (translation initiation factor IF-3 [Calothrix rhizosoleniae])

HSP 1 Score: 160.614 bits (405), Expect = 6.216e-45
Identity = 80/159 (50.31%), Postives = 113/159 (71.07%), Query Frame = 0
Query:  175 NVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333
             +RV+ +   DG+++ G+MA  EAL  A+E  LDL+++S+ ADPPV +I+DYGK+K+  EKK +E +KK  T +VKEVKM YKI++HDY VR+KQ  RFL +GDKVK  + FRGRE QH DL H+LL ++  DL+E+   +   +REG  ++ L  PKK
Sbjct:   23 TIRVIAT---DGEQL-GIMAPQEALQIAEERELDLVLLSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIDDHDYKVRVKQAVRFLKDGDKVKATVMFRGREIQHSDLAHKLLKRMAADLEEVGEVQQAPKREGRNMMILISPKK 177          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|754157427|ref|WP_041779871.1| (translation initiation factor IF-3 [Microcoleus sp. PCC 7113])

HSP 1 Score: 159.073 bits (401), Expect = 3.175e-44
Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 0
Query:  162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333
            PP+N+   R+   N+RV+ +   DG ++ G++   EAL  A+E  LDL+++S+ ADPPV +I+DYGK+K+  EKK +E +KK  T +VKEVKM YKIE HDY VR+ Q  RFL  GDKVK  I FRGRE QH DL  +LL ++  DL+ELA  + + +REG  ++ L  PKK
Sbjct:   14 PPINE---RIRFPNIRVIDT---DGGQL-GIITPQEALRIAEEKELDLVLVSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIEEHDYQVRVNQAERFLKSGDKVKATITFRGREIQHSDLAEDLLKRMAMDLEELAEVQQLPKREGRNMMMLLSPKK 178          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|1101262759|ref|WP_071515676.1| (translation initiation factor IF-3 [Geitlerinema sp. PCC 9228])

HSP 1 Score: 159.073 bits (401), Expect = 4.191e-44
Identity = 79/159 (49.69%), Postives = 112/159 (70.44%), Query Frame = 0
Query:  176 VRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334
            VRV+ +   DG+++ GVM+T +A+A A E  LDL+++S+ ADPPV +++DYGK+K+  EK+ +E KKK    EVKEVKM Y+IE HDY VR+ Q  RFL +GDKVK  + FRGRE QH +L  ELL ++ GDL+E+A  +   +REG  ++ +  PKK 
Sbjct:   25 VRVIDT---DGEQL-GVMSTRDAVAIASEKELDLVLVSDKADPPVCRVMDYGKYKFEQEKRAREAKKKQHAAEVKEVKMRYQIEEHDYKVRLNQAQRFLKDGDKVKATVMFRGREIQHTNLAKELLERLAGDLEEVAEIQQRPKREGRSMMMMLSPKKA 179          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|428250601|gb|AFZ16560.1| (bacterial translation initiation factor 3 (bIF-3) [Microcoleus sp. PCC 7113])

HSP 1 Score: 158.303 bits (399), Expect = 4.451e-44
Identity = 85/172 (49.42%), Postives = 117/172 (68.02%), Query Frame = 0
Query:  162 PPMNDALLRMAPGNVRVVISNPEDGDEMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKK 333
            PP+N+   R+   N+RV+ +   DG ++ G++   EAL  A+E  LDL+++S+ ADPPV +I+DYGK+K+  EKK +E +KK  T +VKEVKM YKIE HDY VR+ Q  RFL  GDKVK  I FRGRE QH DL  +LL ++  DL+ELA  + + +REG  ++ L  PKK
Sbjct:   11 PPINE---RIRFPNIRVIDT---DGGQL-GIITPQEALRIAEEKELDLVLVSDKADPPVCRIMDYGKYKFEQEKKAREARKKQHTADVKEVKMRYKIEEHDYQVRVNQAERFLKSGDKVKATITFRGREIQHSDLAEDLLKRMAMDLEELAEVQQLPKREGRNMMMLLSPKK 175          
BLAST of EWM27775.1 vs. NCBI_GenBank
Match: gi|516257451|ref|WP_017661414.1| (translation initiation factor IF-3 [Geitlerinema sp. PCC 7105])

HSP 1 Score: 158.303 bits (399), Expect = 5.793e-44
Identity = 77/147 (52.38%), Postives = 104/147 (70.75%), Query Frame = 0
Query:  188 EMAGVMATTEALAKAKEMGLDLIMISETADPPVVKIIDYGKFKYSLEKKKKEQKKKAKTTEVKEVKMSYKIENHDYGVRMKQMTRFLDEGDKVKVMIQFRGREQQHIDLGHELLGKVGGDLKELAVQEGVVRREGGRLIALFKPKKT 334
            E  G+M+  +AL  A+E  LDL+++S+ ADPPV +I+DYGK+K+  EK+ KE KKK  ++E+KEVKM YKIE+HDY VR+KQ  RFL  GDKVK  + FRGRE QH DL  +LL ++  DL +LA  +   +REG  ++ L  PKKT
Sbjct:   32 EQLGIMSPADALKIAEEKDLDLVLVSDKADPPVCRIMDYGKYKFEQEKRSKEAKKKQHSSELKEVKMRYKIEDHDYQVRVKQAVRFLKAGDKVKATVMFRGREIQHTDLAQQLLERLAKDLTDLAEVQQRPKREGRSMMMLLSPKKT 178          
The following BLAST results are available for this feature:
BLAST of EWM27775.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110058|gb|EWM27775.1|0.000e+0100.00translation initiation factor if-3 [Nannochloropsi... [more]
gi|553188310|ref|XP_005854774.1|9.297e-121100.00hypothetical protein NGA_0369010, partial [Nannoch... [more]
gi|299117169|emb|CBN75133.1|2.976e-4852.02conserved unknown protein [Ectocarpus siliculosus][more]
gi|219117177|ref|XP_002179383.1|1.785e-4649.15predicted protein, partial [Phaeodactylum tricornu... [more]
gi|1200359954|gb|OUU79415.1|5.565e-4548.89translation initiation factor IF-3 [Hyphomicrobiac... [more]
gi|1208982382|ref|WP_088243515.1|6.216e-4550.31translation initiation factor IF-3 [Calothrix rhiz... [more]
gi|754157427|ref|WP_041779871.1|3.175e-4449.42translation initiation factor IF-3 [Microcoleus sp... [more]
gi|1101262759|ref|WP_071515676.1|4.191e-4449.69translation initiation factor IF-3 [Geitlerinema s... [more]
gi|428250601|gb|AFZ16560.1|4.451e-4449.42bacterial translation initiation factor 3 (bIF-3) ... [more]
gi|516257451|ref|WP_017661414.1|5.793e-4452.38translation initiation factor IF-3 [Geitlerinema s... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2909rna2909Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications