rna2907, rna2907 (mRNA) Nannochloropsis gaditana

Overview
Namerna2907
Unique Namerna2907
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1092
Alignment locationCM002460.1:235412..237175 -

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Properties
Property NameValue
ProductTrimeric LpxA
Orig transcript idgnl|cribi|Naga_100187g5.5307.mrna
Orig protein idgnl|cribi|Naga_100187g5.5307
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:235412..237175 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100187g5gene2786Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2907rna2907-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27773.1cds2899Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2907 ID=rna2907|Name=rna2907|organism=Nannochloropsis gaditana|type=mRNA|length=1092bp
CGCGCGCTCCAGCAACTCAGTGGAAGAAATGTTCATGCTTACCGTGTAGG
AGTGTATCGGGGGCGTGAGACGTGGTAGGCGTGGCAGGAGGAGGTCACAA
TCACCGATTTCATCACTCTTTCCCCCGCGAATGAAGACTTCCAAATTAAC
TCGCTCAAAAACGTTCAGACACAACCCCCACGGAACCTTTTCCATGTACG
CGTGAACGACTCCCCTCTTTTTCCATGCCACACGTTCATAAATACAGGCG
TGCTCACCCCCCCCCACGTATTCAAACCATCATGTCCACGGGTGTGGAAG
CCGCCGACGAAGTGGGCTCGTCCTTCAGCCAATTCAAGCTCCAGCGAGCG
CCGTATAATGTGCGATACATAATCTACGAGATCAAAGAGGATAAAATCCA
GATCGAGAAACAGGGTGCTCGGGAAAATAACTGGGAGGATTTCTGCGCGG
ACCTCCCGGAAAGCGACTGCCGCTACGCGGTGATCGACGTCGAATTCGAA
ACGGACGACGGGCGACCCACCAGTAAGATCATTTTCCTCTCCTGGGCCCC
CGATACGGCGAAAGTGCGGTCGAAGATGGTGTATGCTGGGAGCAAGGAAG
CGATCAAACGGGCATTGGTAGGTGTAGGCATCCACTTAAACGCCACGGAC
CGGAGCGAGCTGGAGTTTGAACAGATTTTACCTGCGGTGAAGCGATTTAC
GTAACGTTAGGAAGATGGGGTGGAAGGAAACGGAGACGCGTATACATAGG
GAGAGGGAGGATGAGGTCGTGGGGGATCCGTTTGCCTCTTTTGGGAGGCT
GTCAGCGGGAATGACATCCAGCCGGCGGCGTTTCCCGGAGAATTTTAGCA
TTGAATATTGATAATCGAGCAACAAGAGGAAAATGGAAGGCATGGGGTAT
GACGGAGAGCAGGCATGCGCTGAAGAAATTAAAATCGGAATCGCGGAGAC
GTTTGCCTCGCCACGTGGAACGAGCGTAGGCGGCTAGCCGTAATCGAGGC
CCAGGCTCAGGCACCCGGGCAAGAAGAGGATGCGGGCACCGAGTCCTGAC
TGGGAGCGAAAGTCGGCTTCGGCCCCATAGGGCGTGTCTTTG
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protein sequence of rna2907

>rna2907-protein ID=rna2907-protein|Name=rna2907|organism=Nannochloropsis gaditana|type=polypeptide|length=263bp
MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQAL
DRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVS
LWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDI
GNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPG
GRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFG
AAYLDAEKVKVSK
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mRNA from alignment at CM002460.1:235412..237175-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2907 ID=rna2907|Name=rna2907|organism=Nannochloropsis gaditana|type=mRNA|length=1764bp|location=Sequence derived from alignment at CM002460.1:235412..237175- (Nannochloropsis gaditana)
CTCCCAGGGGAGGGTCTCGCGTGACCCTGTTTCTCGTGGGTTTGGCAAGC
GCTACTGTTGTGACTTGGAAGGTCGATCGCGGTAATCTGCTTGGTGTTTA
CACACCGGCCTTAGGACGTCATTCCTCTAGCATTCTTGTCTCTGAAGTGC
ACGAGAGCAGCCCCGCGCCCTCAGCGCGATTATCCCGCAGGTCATCTCAT
GGCCATTGGCATTTCAACTGCTCACCAAAATGTCATCAACTCACACTTTC
ACGTAGTAGGGCACGTGGGTAGGAGCAGCATGTCGCGTTTGATTCGAAAA
GGGCTGGATACGCTGGGAAAGGCCTTGCGGGAGACGGGCCAGGCACTTGA
TCGCACAGGAATGGAGGCGCTGGGCTCCGACAAACATAAAGAGCTTTGTA
AGTATAGTACCTACATGCTCGGCCAACCATTGACTCCGTCATGACTGAGC
GATCTCTTCTCAATCATGGCTTTACGGTGTCATGGTGATCGTTTCGGGCT
AAAAAGCATCTGAAACGGGAGCGGCGGGTGTGCGCTGCGGGCTTTGATCG
ACTCTTTGGACCCAAGGCCCCCTGCAAGTTCATATTAACCAAACCCCTCT
TTCACTTGCATAAACGACAGGGTCACGGCATCGACAAGTTTCCAACCTAT
TTGACCAACGTCCGCGGGTCGCGAGCAACGCTTTCGTCTCCCCCTCGGCA
ACGGTCGTTGGAGAAGTGTCGCTCTGGGACAAAGTGTCCATCTGGTACGG
CGCTGTCATCCGTGGTGATCGCAACAGCGTCAAGATTGGGAACTGCACGA
ACGTACAAGATCACGCTGTCATCTGCACCGTCCCTTCCCTGGACTCTGGC
TTCCCCGCCACAGTGGACATAGGGAACCTGGTGACCATCGGTGAGTCGGC
TCTCTGTCTTGACCATACTCTTTTGGAGGTGAAGGCAAAGTGCTCTTGTC
AATTCCACACCCTCGCCTGTTCCGAAGGCCCCTGGTCATTCACCTGGGTG
TCTCTCTCCTAGTCGGTCTCCCCGGACGGCACGGCCTGGAAACGCGTGGA
ACGGGTCTAGGCACCTCTCGACCGAACGTAATGCCTTTTGGGCCAAGGTG
CATCGTCCCCATCGCCCCCCCTCACCCCTACCTGCCTCCTGTACCCGTCC
AATTTCCTCCCCCTACTTTCCTACCTTCCCCCAGGCCACAGCGCCACCAT
CACCTCCGCTACCATCGAGGACAAGGCTTTGGTGGGCATAGGCAGCATCG
TCAGCGAAGGCGCTCTGGTCGAAACTGGAGCTCAGCTGGCGGCGGGCTCT
GTCGTCCCGCCGGGAGGGCGCATTCCGGCGGGGGAACTCTGGGGAGGGAA
TCCCGTCAAGTTCATCCGTAAGCTCGAGGACGAAGAGGTGCTGGCGAACG
TGGCAGCCGCCGAAGCCTACCACGCCCTGGCTCAGTCCCACGAGAACGAG
TTTTTGCCCTTTGGGGCCGCGTATCTGGATGCCGAGAAAGTGAAGGTGTC
CAAGTAGGGACCAGGGGGGGAAAGTGGGGTGTATACGAGCGAGGTGGGGG
GGAGGGGCCGGGGGTGGACAGGGTATTTACTGAGGGTGGGCGTGGCCGAT
GAGAAAGGAGGGGAGGAGGAGGAGGAATGGCGTGTCGTAGGCGCAACAAG
GAGTAGGATGGAGGGGAGACGGAGGGAAGGGAAAGAAAACAACACAAAAG
AAGAAGAAGAAAAAGAAGCAGCAGTCAGGGCACACACAAAGACACGCCCT
ATGGGGCCGAAGCC
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Coding sequence (CDS) from alignment at CM002460.1:235412..237175-

>rna2907 ID=rna2907|Name=rna2907|organism=Nannochloropsis gaditana|type=CDS|length=2376bp|location=Sequence derived from alignment at CM002460.1:235412..237175- (Nannochloropsis gaditana)
GCCACAGCGCCACCATCACCTCCGCTACCATCGAGGACAAGGCTTTGGTG
GGCATAGGCAGCATCGTCAGCGAAGGCGCTCTGGTCGAAACTGGAGCTCA
GCTGGCGGCGGGCTCTGTCGTCCCGCCGGGAGGGCGCATTCCGGCGGGGG
AACTCTGGGGAGGGAATCCCGTCAAGTTCATCCGTAAGCTCGAGGACGAA
GAGGTGCTGGCGAACGTGGCAGCCGCCGAAGCCTACCACGCCCTGGCTCA
GTCCCACGAGAACGAGTTTTTGCCCTTTGGGGCCGCGTATCTGGATGCCG
AGAAAGTGAAGGTGTCCAAGTAGGGTCACGGCATCGACAAGTTTCCAACC
TATTTGACCAACGTCCGCGGGTCGCGAGCAACGCTTTCGTCTCCCCCTCG
GCAACGGTCGTTGGAGAAGTGTCGCTCTGGGACAAAGTGTCCATCTGGTA
CGGCGCTGTCATCCGTGGTGATCGCAACAGCGTCAAGATTGGGAACTGCA
CGAACGTACAAGATCACGCTGTCATCTGCACCGTCCCTTCCCTGGACTCT
GGCTTCCCCGCCACAGTGGACATAGGGAACCTGGTGACCATCGATGGCCA
TTGGCATTTCAACTGCTCACCAAAATGTCATCAACTCACACTTTCACGTA
GTAGGGCACGTGGGTAGGAGCAGCATGTCGCGTTTGATTCGAAAAGGGCT
GGATACGCTGGGAAAGGCCTTGCGGGAGACGGGCCAGGCACTTGATCGCA
CAGGAATGGAGGCGCTGGGCTCCGACAAACATAAAGAGCTTTGCCACAGC
GCCACCATCACCTCCGCTACCATCGAGGACAAGGCTTTGGTGGGCATAGG
CAGCATCGTCAGCGAAGGCGCTCTGGTCGAAACTGGAGCTCAGCTGGCGG
CGGGCTCTGTCGTCCCGCCGGGAGGGCGCATTCCGGCGGGGGAACTCTGG
GGAGGGAATCCCGTCAAGTTCATCCGTAAGCTCGAGGACGAAGAGGTGCT
GGCGAACGTGGCAGCCGCCGAAGCCTACCACGCCCTGGCTCAGTCCCACG
AGAACGAGTTTTTGCCCTTTGGGGCCGCGTATCTGGATGCCGAGAAAGTG
AAGGTGTCCAAGTAGGGTCACGGCATCGACAAGTTTCCAACCTATTTGAC
CAACGTCCGCGGGTCGCGAGCAACGCTTTCGTCTCCCCCTCGGCAACGGT
CGTTGGAGAAGTGTCGCTCTGGGACAAAGTGTCCATCTGGTACGGCGCTG
TCATCCGTGGTGATCGCAACAGCGTCAAGATTGGGAACTGCACGAACGTA
CAAGATCACGCTGTCATCTGCACCGTCCCTTCCCTGGACTCTGGCTTCCC
CGCCACAGTGGACATAGGGAACCTGGTGACCATCGATGGCCATTGGCATT
TCAACTGCTCACCAAAATGTCATCAACTCACACTTTCACGTAGTAGGGCA
CGTGGGTAGGAGCAGCATGTCGCGTTTGATTCGAAAAGGGCTGGATACGC
TGGGAAAGGCCTTGCGGGAGACGGGCCAGGCACTTGATCGCACAGGAATG
GAGGCGCTGGGCTCCGACAAACATAAAGAGCTTTGCCACAGCGCCACCAT
CACCTCCGCTACCATCGAGGACAAGGCTTTGGTGGGCATAGGCAGCATCG
TCAGCGAAGGCGCTCTGGTCGAAACTGGAGCTCAGCTGGCGGCGGGCTCT
GTCGTCCCGCCGGGAGGGCGCATTCCGGCGGGGGAACTCTGGGGAGGGAA
TCCCGTCAAGTTCATCCGTAAGCTCGAGGACGAAGAGGTGCTGGCGAACG
TGGCAGCCGCCGAAGCCTACCACGCCCTGGCTCAGTCCCACGAGAACGAG
TTTTTGCCCTTTGGGGCCGCGTATCTGGATGCCGAGAAAGTGAAGGTGTC
CAAGTAGGGTCACGGCATCGACAAGTTTCCAACCTATTTGACCAACGTCC
GCGGGTCGCGAGCAACGCTTTCGTCTCCCCCTCGGCAACGGTCGTTGGAG
AAGTGTCGCTCTGGGACAAAGTGTCCATCTGGTACGGCGCTGTCATCCGT
GGTGATCGCAACAGCGTCAAGATTGGGAACTGCACGAACGTACAAGATCA
CGCTGTCATCTGCACCGTCCCTTCCCTGGACTCTGGCTTCCCCGCCACAG
TGGACATAGGGAACCTGGTGACCATCGATGGCCATTGGCATTTCAACTGC
TCACCAAAATGTCATCAACTCACACTTTCACGTAGTAGGGCACGTGGGTA
GGAGCAGCATGTCGCGTTTGATTCGAAAAGGGCTGGATACGCTGGGAAAG
GCCTTGCGGGAGACGGGCCAGGCACTTGATCGCACAGGAATGGAGGCGCT
GGGCTCCGACAAACATAAAGAGCTTT
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Synonyms
Publications