EWM27773.1, cds2899 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|585110056|gb|EWM27773.1| (Trimeric LpxA [Nannochloropsis gaditana]) HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0 Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0 Query: 1 MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK 263 MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK Sbjct: 1 MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK 263
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|301121614|ref|XP_002908534.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103565|gb|EEY61617.1| conserved hypothetical protein [Phytophthora infestans T30-4]) HSP 1 Score: 259.61 bits (662), Expect = 8.596e-84 Identity = 122/232 (52.59%), Postives = 165/232 (71.12%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 ++RK LG+ +RETGQALDR G+ L + KE +SRHRQV L+D+RPR+A + +V+P+ATVVG+V + + S++Y VIRGD N V+IGN TNVQD VI T S G +IGN VTIGH T+ S T+E+ +L+G+GSI+ +GALVE+ +AAGSVVPPG RIP+G+LW GNP K++R L D+EV A Y ++A +H +EFLP+G AYLDAEK+K + Sbjct: 1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPRIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTVENNSLIGMGSIILDGALVESNTIIAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADIAKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|695405979|ref|XP_009523979.1| (hypothetical protein PHYSODRAFT_285582 [Phytophthora sojae] >gi|348681446|gb|EGZ21262.1| hypothetical protein PHYSODRAFT_285582 [Phytophthora sojae]) HSP 1 Score: 259.61 bits (662), Expect = 9.380e-84 Identity = 122/232 (52.59%), Postives = 165/232 (71.12%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 ++RK LG+ +RETGQALDR G+ L + KE +SRHRQV L+D+RP++A + +V+P+ATVVG+V + + S++Y VIRGD N V+IGN TNVQD VI T S G +IGN VTIGH T+ S T+E+ AL+G+GSI+ +GALVE+ +AAGSVVPPG RIP+G+LW GNP K++R L D+EV A Y ++A +H +EFLP+G AYLDAEK+K + Sbjct: 1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTVENNALIGMGSIILDGALVESNTVIAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADITKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|1214682089|gb|OWZ00546.1| (hypothetical protein PHMEG_00028233 [Phytophthora megakarya]) HSP 1 Score: 259.225 bits (661), Expect = 9.906e-84 Identity = 123/232 (53.02%), Postives = 164/232 (70.69%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 ++RK LG+ +RETGQALDR G+ L + KE +SRHRQV L+D+RP++A + +V+P+AT+VG+V + + S++Y VIRGD N V+IGN TNVQD VI T S G +IGN VTIGH T+ S TIE+ AL+G+GSIV +GALVE+ +AAGSVVPPG R+PAG+LW GNP K++R L D+EV A Y +A +H +EFLP+G AYLDAEK+K + Sbjct: 1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATIVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTIENNALIGMGSIVLDGALVESNTIIAAGSVVPPGRRVPAGQLWAGNPAKYVRDLSDDEVADIAKQASEYKNIASTHSDEFLPYGTAYLDAEKIKAA 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|675164133|ref|XP_008890951.1| (hypothetical protein PPTG_01107 [Phytophthora parasitica INRA-310] >gi|566033210|gb|ETI56121.1| hypothetical protein F443_01293 [Phytophthora parasitica P1569] >gi|567970892|gb|ETK95912.1| hypothetical protein L915_01223 [Phytophthora parasitica] >gi|567999248|gb|ETL49292.1| hypothetical protein L916_01206 [Phytophthora parasitica] >gi|568028402|gb|ETM02344.1| hypothetical protein L917_01180 [Phytophthora parasitica] >gi|568058992|gb|ETM55585.1| hypothetical protein L914_01223 [Phytophthora parasitica] >gi|568110339|gb|ETN24946.1| hypothetical protein PPTG_01107 [Phytophthora parasitica INRA-310] >gi|570336906|gb|ETO84854.1| hypothetical protein F444_01295 [Phytophthora parasitica P1976] >gi|570960936|gb|ETP25915.1| hypothetical protein F441_01271 [Phytophthora parasitica CJ01A1] >gi|570997561|gb|ETP53918.1| hypothetical protein F442_01235 [Phytophthora parasitica P10297] >gi|970652455|gb|KUF91114.1| Gamma carbonic anhydrase 1 [Phytophthora nicotianae] >gi|970662668|gb|KUG00036.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Phytophthora nicotianae]) HSP 1 Score: 257.684 bits (657), Expect = 4.183e-83 Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 ++RK LG+ +RETGQALDR G+ L + KE +SRHRQV L+D+RP++A + +V+P+ATVVG+V + + S++Y VIRGD N V+IGN TNVQD VI T S G +IGN VTIGH T+ S TIE+ +L+G+GSI+ +GALVE+ +AAGSVVPPG RIP G+LW GNP K++R L D+EV A Y ++A +H +EFLP+G AYLDAEK+K + Sbjct: 1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTIENNSLIGMGSIILDGALVESNTIIAAGSVVPPGRRIPPGQLWAGNPAKYVRDLSDDEVADITKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|953487904|emb|CEG48278.1| (Trimeric LpxA-like [Plasmopara halstedii]) HSP 1 Score: 257.684 bits (657), Expect = 4.322e-83 Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 ++RK LG+ +RETGQALDR G+ L + KE +SRHRQV L+D+RP++A + +V+P+AT+VG+V + + S++Y VIRGD N V+IGN TNVQD VI T S + G +IGN VTIGH T+ S TIE+ L+G+GSI+ +GALVE+ LAAGSVVPPG RIP+G+LW GNP K++R L D+EV A Y +A +H +EFLP+G AYLDAEK+K + Sbjct: 1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPQIAHDVWVAPNATIVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTNPGLAPGSNIGNDVTIGHGCTLYSCTIENNVLIGMGSIILDGALVESNTILAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADITKQASEYKNIASTHSDEFLPYGTAYLDAEKIKAA 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|673034676|ref|XP_008871299.1| (hypothetical protein H310_07655 [Aphanomyces invadans] >gi|574473270|gb|ETW00274.1| hypothetical protein H310_07655 [Aphanomyces invadans]) HSP 1 Score: 256.914 bits (655), Expect = 7.620e-83 Identity = 122/229 (53.28%), Postives = 167/229 (72.93%), Query Frame = 0 Query: 32 IRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260 +RK + LG+A+RETGQA+DR G+ LGS+ H+E +SRHRQV L+D+ P +A +++V+P+A+V+G+V + + SIWYG VIRGD N V IGN TN+QD AVI T + G IGN VT+GH A + S TIE+ LVG+GSIV +GALVE+ + LAAG+VVPPG RIP+G+LW G+P +F+R + ++EV V A Y LA++H EFLP+G AYLDAE++K Sbjct: 1 MRKAIYQLGRAVRETGQAVDRLGLRVLGSNLHREKFSRHRQVMALYDKVPMIAHDSWVAPNASVIGDVEICNDSSIWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVESNSILAAGTVVPPGRRIPSGQLWAGSPAQFVRDVSEDEVADLVKQATEYTKLAETHSEEFLPYGTAYLDAERIK 229
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|635364533|emb|CCI47075.1| (unnamed protein product [Albugo candida]) HSP 1 Score: 256.914 bits (655), Expect = 8.051e-83 Identity = 118/224 (52.68%), Postives = 163/224 (72.77%), Query Frame = 0 Query: 39 LGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262 +G+A RETGQALDR G++ LG++ +KE +SRHRQ+ NL+D++P +A + +V+P+ATV+G+V + + S+WY VIRGD N+V IGN TNVQD VI T G PA IGN VTIGH + S TIE+ +L+G+GSI+ +GAL+E+ + AGSVVPPG RIP+G+LW GNP K++R + D+EV + A+ Y A+A +H EFLP+G YLDAE+VK S Sbjct: 9 VGRAFRETGQALDRVGLKVLGNNSYKEQFSRHRQIINLYDKQPAIAHDVWVAPNATVIGDVEICNDASVWYNVVIRGDLNAVTIGNRTNVQDRTVIHTSKENSPGVPAGTSIGNNVTIGHGCVLYSCTIENTSLIGMGSIILDGALIESNTIIGAGSVVPPGARIPSGQLWVGNPAKYVRDITDDEVQDIIRQAKEYQAIALTHSAEFLPYGTVYLDAERVKAS 232
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|1173945269|gb|OQR93919.1| (hypothetical protein THRCLA_08309 [Thraustotheca clavata]) HSP 1 Score: 254.603 bits (649), Expect = 6.833e-82 Identity = 117/230 (50.87%), Postives = 167/230 (72.61%), Query Frame = 0 Query: 31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260 ++RK LG+ +RETGQA+DR G+ LGS++ KE +SRHRQ+ NL+D+ P VA +++V+P+A+V+G+V + ++ S+WYG VIRGD N V IGN TN+QD VI T + G IGN VT+GH + S TIE+ L+G+GSIV +GALVE+ + LAAG+VVPPG RIP+G+LW G+P +++R + D+EV A+ Y LA++H +EFLP+G AYLDAE++K Sbjct: 1 MLRKVTYELGRCVRETGQAVDRLGLRVLGSNQAKEKFSRHRQIMNLYDKVPSVAYDSWVAPNASVIGDVEICNEASVWYGCVIRGDLNKVSIGNRTNIQDRTVIHTSSTTTPGLAPGASIGNDVTVGHGCILYSCTIENNVLIGMGSIVLDGALVESNSILAAGTVVPPGRRIPSGQLWAGSPAQYVRDVTDDEVADLAKQAQEYKKLAETHSDEFLPYGTAYLDAERIK 230
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|698796470|ref|XP_009831264.1| (hypothetical protein H257_07436 [Aphanomyces astaci] >gi|574113934|gb|ETV79423.1| hypothetical protein H257_07436 [Aphanomyces astaci]) HSP 1 Score: 253.447 bits (646), Expect = 1.864e-81 Identity = 119/229 (51.97%), Postives = 166/229 (72.49%), Query Frame = 0 Query: 32 IRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260 +RK + LG+A+RETGQA+DR G+ LGS H+E +SRHRQ+ L+D+ P +A +++V+P+A+V+G+V + + S+WYG VIRGD N V IGN TN+QD AVI T + G IGN VT+GH A + S TIE+ LVG+GSIV +GALVE+ + LAAG+VVPPG RIP+ +LW G+P K++R + ++EV V A Y LA++H +EFLP+G AYLDAE++K Sbjct: 1 MRKAIFELGRAVRETGQAVDRLGLRVLGSSLHREKFSRHRQIMALYDKAPVIAHDSWVAPNASVIGDVEICNDSSVWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVESNSILAAGTVVPPGRRIPSNQLWAGSPAKYVRDVSEDEVADLVKQASEYTKLAETHSDEFLPYGTAYLDAERIK 229 The following BLAST results are available for this feature:
BLAST of EWM27773.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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