EWM27773.1, cds2899 (CDS) Nannochloropsis gaditana

Overview
NameEWM27773.1
Unique Namecds2899
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:236779..236977 -
Alignment locationCM002460.1:236286..236555 -
Alignment locationCM002460.1:235669..235991 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27773.1
ProductTrimeric LpxA
Orig transcript idgnl|cribi|Naga_100187g5.5307.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:236779..236977 -
CM002460.1supercontigCM002460.1:236286..236555 -
CM002460.1supercontigCM002460.1:235669..235991 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR011004Trimer_LpxA-like
Homology
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|585110056|gb|EWM27773.1| (Trimeric LpxA [Nannochloropsis gaditana])

HSP 1 Score: 535.798 bits (1379), Expect = 0.000e+0
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0
Query:    1 MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK 263
            MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK
Sbjct:    1 MAIGISTAHQNVINSHFHVVGHVGRSSMSRLIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVSK 263          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|301121614|ref|XP_002908534.1| (conserved hypothetical protein [Phytophthora infestans T30-4] >gi|262103565|gb|EEY61617.1| conserved hypothetical protein [Phytophthora infestans T30-4])

HSP 1 Score: 259.61 bits (662), Expect = 8.596e-84
Identity = 122/232 (52.59%), Postives = 165/232 (71.12%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            ++RK    LG+ +RETGQALDR G+  L  +  KE +SRHRQV  L+D+RPR+A + +V+P+ATVVG+V + +  S++Y  VIRGD N V+IGN TNVQD  VI T  S   G     +IGN VTIGH  T+ S T+E+ +L+G+GSI+ +GALVE+   +AAGSVVPPG RIP+G+LW GNP K++R L D+EV      A  Y ++A +H +EFLP+G AYLDAEK+K +
Sbjct:    1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPRIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTVENNSLIGMGSIILDGALVESNTIIAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADIAKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|695405979|ref|XP_009523979.1| (hypothetical protein PHYSODRAFT_285582 [Phytophthora sojae] >gi|348681446|gb|EGZ21262.1| hypothetical protein PHYSODRAFT_285582 [Phytophthora sojae])

HSP 1 Score: 259.61 bits (662), Expect = 9.380e-84
Identity = 122/232 (52.59%), Postives = 165/232 (71.12%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            ++RK    LG+ +RETGQALDR G+  L  +  KE +SRHRQV  L+D+RP++A + +V+P+ATVVG+V + +  S++Y  VIRGD N V+IGN TNVQD  VI T  S   G     +IGN VTIGH  T+ S T+E+ AL+G+GSI+ +GALVE+   +AAGSVVPPG RIP+G+LW GNP K++R L D+EV      A  Y ++A +H +EFLP+G AYLDAEK+K +
Sbjct:    1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTVENNALIGMGSIILDGALVESNTVIAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADITKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|1214682089|gb|OWZ00546.1| (hypothetical protein PHMEG_00028233 [Phytophthora megakarya])

HSP 1 Score: 259.225 bits (661), Expect = 9.906e-84
Identity = 123/232 (53.02%), Postives = 164/232 (70.69%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            ++RK    LG+ +RETGQALDR G+  L  +  KE +SRHRQV  L+D+RP++A + +V+P+AT+VG+V + +  S++Y  VIRGD N V+IGN TNVQD  VI T  S   G     +IGN VTIGH  T+ S TIE+ AL+G+GSIV +GALVE+   +AAGSVVPPG R+PAG+LW GNP K++R L D+EV      A  Y  +A +H +EFLP+G AYLDAEK+K +
Sbjct:    1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATIVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTIENNALIGMGSIVLDGALVESNTIIAAGSVVPPGRRVPAGQLWAGNPAKYVRDLSDDEVADIAKQASEYKNIASTHSDEFLPYGTAYLDAEKIKAA 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|675164133|ref|XP_008890951.1| (hypothetical protein PPTG_01107 [Phytophthora parasitica INRA-310] >gi|566033210|gb|ETI56121.1| hypothetical protein F443_01293 [Phytophthora parasitica P1569] >gi|567970892|gb|ETK95912.1| hypothetical protein L915_01223 [Phytophthora parasitica] >gi|567999248|gb|ETL49292.1| hypothetical protein L916_01206 [Phytophthora parasitica] >gi|568028402|gb|ETM02344.1| hypothetical protein L917_01180 [Phytophthora parasitica] >gi|568058992|gb|ETM55585.1| hypothetical protein L914_01223 [Phytophthora parasitica] >gi|568110339|gb|ETN24946.1| hypothetical protein PPTG_01107 [Phytophthora parasitica INRA-310] >gi|570336906|gb|ETO84854.1| hypothetical protein F444_01295 [Phytophthora parasitica P1976] >gi|570960936|gb|ETP25915.1| hypothetical protein F441_01271 [Phytophthora parasitica CJ01A1] >gi|570997561|gb|ETP53918.1| hypothetical protein F442_01235 [Phytophthora parasitica P10297] >gi|970652455|gb|KUF91114.1| Gamma carbonic anhydrase 1 [Phytophthora nicotianae] >gi|970662668|gb|KUG00036.1| 3-methyl-2-oxobutanoate hydroxymethyltransferase [Phytophthora nicotianae])

HSP 1 Score: 257.684 bits (657), Expect = 4.183e-83
Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            ++RK    LG+ +RETGQALDR G+  L  +  KE +SRHRQV  L+D+RP++A + +V+P+ATVVG+V + +  S++Y  VIRGD N V+IGN TNVQD  VI T  S   G     +IGN VTIGH  T+ S TIE+ +L+G+GSI+ +GALVE+   +AAGSVVPPG RIP G+LW GNP K++R L D+EV      A  Y ++A +H +EFLP+G AYLDAEK+K +
Sbjct:    1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPKIAHDVWVAPNATVVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTSPGLAPGANIGNDVTIGHGCTLYSCTIENNSLIGMGSIILDGALVESNTIIAAGSVVPPGRRIPPGQLWAGNPAKYVRDLSDDEVADITKQASEYKSIASTHSDEFLPYGTAYLDAEKIKAA 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|953487904|emb|CEG48278.1| (Trimeric LpxA-like [Plasmopara halstedii])

HSP 1 Score: 257.684 bits (657), Expect = 4.322e-83
Identity = 122/232 (52.59%), Postives = 164/232 (70.69%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            ++RK    LG+ +RETGQALDR G+  L  +  KE +SRHRQV  L+D+RP++A + +V+P+AT+VG+V + +  S++Y  VIRGD N V+IGN TNVQD  VI T  S + G     +IGN VTIGH  T+ S TIE+  L+G+GSI+ +GALVE+   LAAGSVVPPG RIP+G+LW GNP K++R L D+EV      A  Y  +A +H +EFLP+G AYLDAEK+K +
Sbjct:    1 MMRKVTFELGRCVRETGQALDRLGLRVLNDNSFKEKFSRHRQVMALYDKRPQIAHDVWVAPNATIVGDVEICNDASVFYNVVIRGDLNQVRIGNRTNVQDRTVIHTASSTNPGLAPGSNIGNDVTIGHGCTLYSCTIENNVLIGMGSIILDGALVESNTILAAGSVVPPGRRIPSGQLWAGNPAKYVRDLSDDEVADITKQASEYKNIASTHSDEFLPYGTAYLDAEKIKAA 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|673034676|ref|XP_008871299.1| (hypothetical protein H310_07655 [Aphanomyces invadans] >gi|574473270|gb|ETW00274.1| hypothetical protein H310_07655 [Aphanomyces invadans])

HSP 1 Score: 256.914 bits (655), Expect = 7.620e-83
Identity = 122/229 (53.28%), Postives = 167/229 (72.93%), Query Frame = 0
Query:   32 IRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260
            +RK +  LG+A+RETGQA+DR G+  LGS+ H+E +SRHRQV  L+D+ P +A +++V+P+A+V+G+V + +  SIWYG VIRGD N V IGN TN+QD AVI T  +   G      IGN VT+GH A + S TIE+  LVG+GSIV +GALVE+ + LAAG+VVPPG RIP+G+LW G+P +F+R + ++EV   V  A  Y  LA++H  EFLP+G AYLDAE++K
Sbjct:    1 MRKAIYQLGRAVRETGQAVDRLGLRVLGSNLHREKFSRHRQVMALYDKVPMIAHDSWVAPNASVIGDVEICNDSSIWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVESNSILAAGTVVPPGRRIPSGQLWAGSPAQFVRDVSEDEVADLVKQATEYTKLAETHSEEFLPYGTAYLDAERIK 229          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|635364533|emb|CCI47075.1| (unnamed protein product [Albugo candida])

HSP 1 Score: 256.914 bits (655), Expect = 8.051e-83
Identity = 118/224 (52.68%), Postives = 163/224 (72.77%), Query Frame = 0
Query:   39 LGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVKVS 262
            +G+A RETGQALDR G++ LG++ +KE +SRHRQ+ NL+D++P +A + +V+P+ATV+G+V + +  S+WY  VIRGD N+V IGN TNVQD  VI T      G PA   IGN VTIGH   + S TIE+ +L+G+GSI+ +GAL+E+   + AGSVVPPG RIP+G+LW GNP K++R + D+EV   +  A+ Y A+A +H  EFLP+G  YLDAE+VK S
Sbjct:    9 VGRAFRETGQALDRVGLKVLGNNSYKEQFSRHRQIINLYDKQPAIAHDVWVAPNATVIGDVEICNDASVWYNVVIRGDLNAVTIGNRTNVQDRTVIHTSKENSPGVPAGTSIGNNVTIGHGCVLYSCTIENTSLIGMGSIILDGALIESNTIIGAGSVVPPGARIPSGQLWVGNPAKYVRDITDDEVQDIIRQAKEYQAIALTHSAEFLPYGTVYLDAERVKAS 232          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|1173945269|gb|OQR93919.1| (hypothetical protein THRCLA_08309 [Thraustotheca clavata])

HSP 1 Score: 254.603 bits (649), Expect = 6.833e-82
Identity = 117/230 (50.87%), Postives = 167/230 (72.61%), Query Frame = 0
Query:   31 LIRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260
            ++RK    LG+ +RETGQA+DR G+  LGS++ KE +SRHRQ+ NL+D+ P VA +++V+P+A+V+G+V + ++ S+WYG VIRGD N V IGN TN+QD  VI T  +   G      IGN VT+GH   + S TIE+  L+G+GSIV +GALVE+ + LAAG+VVPPG RIP+G+LW G+P +++R + D+EV      A+ Y  LA++H +EFLP+G AYLDAE++K
Sbjct:    1 MLRKVTYELGRCVRETGQAVDRLGLRVLGSNQAKEKFSRHRQIMNLYDKVPSVAYDSWVAPNASVIGDVEICNEASVWYGCVIRGDLNKVSIGNRTNIQDRTVIHTSSTTTPGLAPGASIGNDVTVGHGCILYSCTIENNVLIGMGSIVLDGALVESNSILAAGTVVPPGRRIPSGQLWAGSPAQYVRDVTDDEVADLAKQAQEYKKLAETHSDEFLPYGTAYLDAERIK 230          
BLAST of EWM27773.1 vs. NCBI_GenBank
Match: gi|698796470|ref|XP_009831264.1| (hypothetical protein H257_07436 [Aphanomyces astaci] >gi|574113934|gb|ETV79423.1| hypothetical protein H257_07436 [Aphanomyces astaci])

HSP 1 Score: 253.447 bits (646), Expect = 1.864e-81
Identity = 119/229 (51.97%), Postives = 166/229 (72.49%), Query Frame = 0
Query:   32 IRKGLDTLGKALRETGQALDRTGMEALGSDKHKELWSRHRQVSNLFDQRPRVASNAFVSPSATVVGEVSLWDKVSIWYGAVIRGDRNSVKIGNCTNVQDHAVICTVPSLDSGFPATVDIGNLVTIGHSATITSATIEDKALVGIGSIVSEGALVETGAQLAAGSVVPPGGRIPAGELWGGNPVKFIRKLEDEEVLANVAAAEAYHALAQSHENEFLPFGAAYLDAEKVK 260
            +RK +  LG+A+RETGQA+DR G+  LGS  H+E +SRHRQ+  L+D+ P +A +++V+P+A+V+G+V + +  S+WYG VIRGD N V IGN TN+QD AVI T  +   G      IGN VT+GH A + S TIE+  LVG+GSIV +GALVE+ + LAAG+VVPPG RIP+ +LW G+P K++R + ++EV   V  A  Y  LA++H +EFLP+G AYLDAE++K
Sbjct:    1 MRKAIFELGRAVRETGQAVDRLGLRVLGSSLHREKFSRHRQIMALYDKAPVIAHDSWVAPNASVIGDVEICNDSSVWYGVVIRGDLNKVSIGNRTNIQDRAVIHTSSTTTPGLAPGTSIGNNVTVGHGAILYSCTIENNVLVGMGSIVLDGALVESNSILAAGTVVPPGRRIPSNQLWAGSPAKYVRDVSEDEVADLVKQASEYTKLAETHSDEFLPYGTAYLDAERIK 229          
The following BLAST results are available for this feature:
BLAST of EWM27773.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110056|gb|EWM27773.1|0.000e+0100.00Trimeric LpxA [Nannochloropsis gaditana][more]
gi|301121614|ref|XP_002908534.1|8.596e-8452.59conserved hypothetical protein [Phytophthora infes... [more]
gi|695405979|ref|XP_009523979.1|9.380e-8452.59hypothetical protein PHYSODRAFT_285582 [Phytophtho... [more]
gi|1214682089|gb|OWZ00546.1|9.906e-8453.02hypothetical protein PHMEG_00028233 [Phytophthora ... [more]
gi|675164133|ref|XP_008890951.1|4.183e-8352.59hypothetical protein PPTG_01107 [Phytophthora para... [more]
gi|953487904|emb|CEG48278.1|4.322e-8352.59Trimeric LpxA-like [Plasmopara halstedii][more]
gi|673034676|ref|XP_008871299.1|7.620e-8353.28hypothetical protein H310_07655 [Aphanomyces invad... [more]
gi|635364533|emb|CCI47075.1|8.051e-8352.68unnamed protein product [Albugo candida][more]
gi|1173945269|gb|OQR93919.1|6.833e-8250.87hypothetical protein THRCLA_08309 [Thraustotheca c... [more]
gi|698796470|ref|XP_009831264.1|1.864e-8151.97hypothetical protein H257_07436 [Aphanomyces astac... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2907rna2907Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications