rna2900, rna2900 (mRNA) Nannochloropsis gaditana

Overview
Namerna2900
Unique Namerna2900
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1721
Alignment locationCM002460.1:207674..209169 -

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101837g1.4281.mrna
Orig protein idgnl|cribi|Naga_101837g1.4281
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:207674..209169 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101837g1gene2779Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27781.1cds2892Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2900rna2900-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2900 ID=rna2900|Name=rna2900|organism=Nannochloropsis gaditana|type=mRNA|length=1721bp
AGCAGATATTTGCAGAGGGGGGGTCGGAGCAGCCCTCTGGTCCGGCTCGT
ACGGGCGACCGCCGGGACTTGAATTCCCTGCCACCACCTGCCTTCCCTCC
CCTTCCCGCCAAGGGCGAAGAGCCGGGGCGAGGCGATGAGGAGGGAAGGA
GGGGTTCGGAGGAGGTACGGGAGGCAGTGACGACAACAGATGGAGTTAAA
CAGAAGGATACGATGGCCTCGGACGGGGAGGAGGCGGCAGGCACGGGTAC
AGGCAGTGATGAGATGGGAAGGACGGGAGGCGGCCATGCGCGGGGGGCGC
GTGTGCGTGCCACGATGAAGGCAAGCGTCAGAAGACCCAGGAACGGAGCG
ATCAGGAGCATGGTCCCGTTGCCGGAAGATTTCGCGCCATTTCCTATCTT
AGCCCCCAGCGTGACCGACGGGACTGGTGGTAGGACCGACGGGAGCGAGG
AGAGGATGATGGGAAAAGCCCGAGGGGCCGTGTCGCAGGGCTGGCACCCC
TGCGAGGTCATTCGACCCCTGACGGTTACTCCGGGTGTCTGCCAATTGCA
TGATGGAGGCCTCTGCTTCCTGCGTCCGGCCCCGCTGCCCTCCCTCCCTT
CCACCCTGCGCAGCCGCAGGCGGAGGCGCGCGGGGCCTTTGCAGAGTTTT
CCTTCCACTCTCATCCCCTTGCCTTCTATACTGGCTCTTTTTCCTCGCCG
GTACCAACAGCAAGACGCCATCGCCCTGGAGCTCTTTCTCGAGGACCACA
CCTCCCTCTTTCTTAACTTCCACACCCAGGCCGCCGCGCTCTCCGTGTCG
AAGCACGTCCAGAACCACCACCCTCCCGTCCTGGCTCCTCGCCTTAACTT
GAGCCCCCGTCGGCTCCTGGTGCACGCCAAGACGGCCCATGGCCACTCTC
TGACGCAGGCCTGGGTGCGTCGGGAAATTTCAAATTTCGAATACTTAGCC
TGCGTGAACGCGGCGGCGGGGCGGACTCATAACGATTTGTCGCAATACCC
CGTCTTTCCCTGGATCTTGGCCGACTACACCTCGGAGGTTTTGAATTTGA
ACGACCCGCACACGTTTCGGGATTTGAAATGGCCGATGGGGGCCCAGACC
GAAACGGCCCGTCAACGGCTCCAAGACCGTTACGCGGCCCTTCGGGAGGG
ATACGGAGAGGCGTGCTTCGCGGGTGATAGTGGGTCTTCCCTCCCTCCTT
TCCACCACGGATCCCATTACTCGAATGCAGCGTTTGTCCTCTGGTATCTC
CTCCGCCTGGAACCTTTCACTTCCCTACATCGGGAATTTCACTCGGGACA
TTTCGATTTGCCCGACCGGCAGTTCCGCTCCCTCCGCACCGCTTACCAGG
GTTGTGTGACCAACCCCAACGACGTGAAGGAGCTCATTCCGGAATTCTTT
TGCCTCCCCGAATTCTTGTCGAACGTGAATCGGGTCTCATTGGGCCGGAC
CCAAAGTGGGGACGAAGTCGGGGACGTGGAACTTCCGCCATGGGCCCATG
GGAGTGTGGATGATTTTGTGCGCATGCATCGTGAGGCGTTGGAAAGTGAG
TTTGTCAGCGCTCATCTCCACCACTGGATCGACCTCGTCTTTGGCTATAA
ACAGCGCCCGCCCTTCCTTCCCTCTCCCTCCTCCTCCTCCTCCACCCTGA
GCGCGGCCCTCCGGCCTCGGAGGGAGGGGGAAACGCCCCCCCCTCGCGCC
CGCTGTGGGCGCTTGCAATGA
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protein sequence of rna2900

>rna2900-protein ID=rna2900-protein|Name=rna2900|organism=Nannochloropsis gaditana|type=polypeptide|length=356bp
MAEKQAVLGADGGILPSSSGVSAPPSPLPPPVSLRLDEDVRGGLEVLFRE
RGRRGRASLTNALCGWKEEEMWAWRWWTCFLMDEEGVGGESGVWGGGGGG
CQEAFAEFLREWREERQRRWGKEGDVGGVERDGGGGREEEGEVVVWEVDE
TEDRLRNRRKLRRRPWASVFFEEGEGGEEWWEEEDVEVAVLLRHLEKGRR
LGDLKKGDEEGRDERETRPTSGVEGSEKGKKEEEGAKAVEKANVAPHVSC
APERVMEREGGGGKVLERGTEFVEDGPGRGLWKELVAYQKRSTEKGEEGG
EEEEEEGSEETEEEEAGEEEGGKRERKREMEEEGEGVGGGKEQEEVKAKM
ESHTGI
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mRNA from alignment at CM002460.1:207674..209169-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2900 ID=rna2900|Name=rna2900|organism=Nannochloropsis gaditana|type=mRNA|length=1496bp|location=Sequence derived from alignment at CM002460.1:207674..209169- (Nannochloropsis gaditana)
CCCTCCTCCCCATTGAGGACCCTGCCTGGCTCAACTCGCTGGGCTTGCCC
GCGTGGTTTAACGCGATGGCAAGGGACAGAGACATGATGAGGAGGGAGGG
GAGGGAAAGGCAAAAGGCCCGCATGGGTCCCTCCAGTGAAGCGGACGAAA
TCCCCGACGGTCCTGGGAACAAGGCCGGAAACGCCGGAAGCACCTACCTT
AACAGGCGGATCCTGACCTTCCCAGCCATCCTTCCCGCACTTTTCCGTCT
GGCGGAGCCTGGAGATAGGGGGACGGACGAGGAGCAGGGTCGCACCTCCC
TCAAATCAGACTGTGCAGAGGTTCCCCTCTGTGGTACACCTGCGGCGGCG
GGGGGAGGGGGGGGCGGGGAGGGGAAGAGGATGGGGAGGAGGAAGTGAAG
GGCGGGTGCGGGTGGCAGAGGAGAGAATGGCAGAGAAGCAAGCCGTCCTC
GGGGCCGACGGAGGAATTCTTCCCTCCTCCTCAGGCGTGTCAGCACCTCC
TTCTCCCCTCCCTCCTCCTGTTTCCCTCCGTTTGGATGAAGACGTACGGG
GAGGTCTGGAGGTGCTGTTCAGAGAGCGAGGTCGGCGAGGTCGCGCCTCC
TTAACAAATGCATTGTGCGGTTGGAAGGAGGAGGAAATGTGGGCGTGGCG
ATGGTGGACGTGTTTTTTGATGGATGAGGAGGGCGTGGGAGGTGAGAGCG
GGGTCTGGGGGGGAGGAGGTGGGGGATGTCAGGAGGCTTTCGCGGAATTT
TTGCGGGAGTGGCGGGAAGAGCGACAAAGGAGATGGGGAAAGGAGGGAGA
TGTAGGAGGTGTAGAGAGAGATGGAGGAGGAGGGAGGGAGGAGGAGGGCG
AGGTGGTCGTATGGGAGGTGGACGAAACGGAGGATCGCCTGAGAAATCGC
CGAAAGTTAAGGCGAAGGCCATGGGCCTCGGTGTTTTTCGAGGAAGGAGA
AGGAGGGGAGGAGTGGTGGGAGGAAGAGGACGTGGAGGTGGCGGTGCTAC
TTCGGCACCTGGAGAAGGGAAGAAGGTTGGGGGACCTCAAGAAAGGTGAT
GAGGAGGGAAGGGATGAGAGAGAAACCAGACCAACGTCGGGAGTGGAAGG
GTCAGAAAAAGGTAAGAAGGAGGAAGAGGGCGCGAAAGCCGTTGAGAAGG
CGAACGTGGCACCACACGTCAGCTGTGCCCCTGAGAGGGTGATGGAGAGG
GAAGGAGGAGGAGGGAAGGTTCTGGAAAGGGGGACGGAGTTTGTGGAGGA
TGGGCCTGGAAGGGGGCTTTGGAAGGAGTTGGTGGCTTATCAGAAACGAA
GTACCGAGAAAGGAGAGGAAGGGGGGGAGGAGGAGGAAGAAGAAGGAAGT
GAAGAGACGGAGGAAGAAGAAGCGGGGGAGGAAGAGGGAGGGAAGAGGGA
AAGGAAGAGGGAGATGGAGGAAGAGGGCGAGGGAGTAGGGGGGGGGAAGG
AGCAGGAGGAGGTGAAGGCAAAGATGGAATCTCATACGGGAATAAG
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Coding sequence (CDS) from alignment at CM002460.1:207674..209169-

>rna2900 ID=rna2900|Name=rna2900|organism=Nannochloropsis gaditana|type=CDS|length=1070bp|location=Sequence derived from alignment at CM002460.1:207674..209169- (Nannochloropsis gaditana)
ATGGCAGAGAAGCAAGCCGTCCTCGGGGCCGACGGAGGAATTCTTCCCTC
CTCCTCAGGCGTGTCAGCACCTCCTTCTCCCCTCCCTCCTCCTGTTTCCC
TCCGTTTGGATGAAGACGTACGGGGAGGTCTGGAGGTGCTGTTCAGAGAG
CGAGGTCGGCGAGGTCGCGCCTCCTTAACAAATGCATTGTGCGGTTGGAA
GGAGGAGGAAATGTGGGCGTGGCGATGGTGGACGTGTTTTTTGATGGATG
AGGAGGGCGTGGGAGGTGAGAGCGGGGTCTGGGGGGGAGGAGGTGGGGGA
TGTCAGGAGGCTTTCGCGGAATTTTTGCGGGAGTGGCGGGAAGAGCGACA
AAGGAGATGGGGAAAGGAGGGAGATGTAGGAGGTGTAGAGAGAGATGGAG
GAGGAGGGAGGGAGGAGGAGGGCGAGGTGGTCGTATGGGAGGTGGACGAA
ACGGAGGATCGCCTGAGAAATCGCCGAAAGTTAAGGCGAAGGCCATGGGC
CTCGGTGTTTTTCGAGGAAGGAGAAGGAGGGGAGGAGTGGTGGGAGGAAG
AGGACGTGGAGGTGGCGGTGCTACTTCGGCACCTGGAGAAGGGAAGAAGG
TTGGGGGACCTCAAGAAAGGTGATGAGGAGGGAAGGGATGAGAGAGAAAC
CAGACCAACGTCGGGAGTGGAAGGGTCAGAAAAAGGTAAGAAGGAGGAAG
AGGGCGCGAAAGCCGTTGAGAAGGCGAACGTGGCACCACACGTCAGCTGT
GCCCCTGAGAGGGTGATGGAGAGGGAAGGAGGAGGAGGGAAGGTTCTGGA
AAGGGGGACGGAGTTTGTGGAGGATGGGCCTGGAAGGGGGCTTTGGAAGG
AGTTGGTGGCTTATCAGAAACGAAGTACCGAGAAAGGAGAGGAAGGGGGG
GAGGAGGAGGAAGAAGAAGGAAGTGAAGAGACGGAGGAAGAAGAAGCGGG
GGAGGAAGAGGGAGGGAAGAGGGAAAGGAAGAGGGAGATGGAGGAAGAGG
GCGAGGGAGTAGGGGGGGGGAAGGAGCAGGAGGAGGTGAAGGCAAAGATG
GAATCTCATACGGGAATAAG
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Synonyms
Publications