rna29, rna29 (mRNA) Nannochloropsis gaditana

Overview
Namerna29
Unique Namerna29
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length947
Alignment locationCM002455.1:93409..94472 +

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Properties
Property NameValue
ProductGlycosyl hydrolase, family 13, all-beta
Orig transcript idgnl|cribi|Naga_101467g1.8957.mrna
Orig protein idgnl|cribi|Naga_101467g1.8957
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:93409..94472 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101467g1gene27Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna29rna29-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM30644.1cds29Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna29 ID=rna29|Name=rna29|organism=Nannochloropsis gaditana|type=mRNA|length=947bp
ATCCCCCCTTCCTCCCCCTCTCCCCGATTCAAACAGATAGGAGGTCCCGT
ACCCGACTTTAACCCTCCTCCTCCTGCGACGACCACCACACAAGGAAATG
CGACACCGTCTTCGCACCTTTATGCAAACGATTGTGCTGGCTGACGGCTC
TTCTATTCGGACACCTACTTTCTTGAGTAAGAATCAACCGCGGGTGCTTT
TAGTGAAGACGGACCCTCGGGCCCAGCAAATAGCGGCGGAACAGCGGAGT
AGGGAGGGGGAGCAGGCCCGAAGGACACAGCCAGCACCGCAAGAAAAACA
GGAATAAGACGGAAAAAAGAAAGAAAGGAAGGCCTGTGGGCGTTCTTCGT
GGCGTAAGCACACCTGGGAAGTGATGGCTGTTTACAAACAGCGATGCCTT
TCCTGCGCCCTCTTCATCCTCCTTCACATTTCGTCCTTCTCGGCCCAAAT
CCTCCCATCCCATCCCTCCCTCCGAATCCATCGCTTTCCTTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCTTTCTTCCCCCCTCCCTCCTCC
TCCTCCTCCTCCTCAACCTCCGTTCCCCATTCTCTTCACGTGGAGGACAC
GAAGGAGATGAGAGCTTCTCCACACGACGCGCCAGCGCCTACCTCCCCTG
GCCAACCTCCCCCCTCCTTCCCTTCTCATCCTATGAAGCCTCGAGGGCCG
GGGCGGGCCACGGGAGTCTTCGAAGTCCTCATAGTCCCTCACAGCCACTG
CGATGCGGGGTACAAGAAGACAGTCGAGGGCTACTACTTGACCGAGGTAC
TTCCTTCCTCCCCTCCCTCCCTCCCTCCCTCCCTCCCTCCTTCCCCTCCG
CTCATCCTCTCTTCTCCCCATTCGAGTCTGATATACCTGGTCTCAGGCCC
CAATTTTGGCCTGATTTTTCTCGCTCTTCCCCCCTTCCTCTTTCCCT
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protein sequence of rna29

>rna29-protein ID=rna29-protein|Name=rna29|organism=Nannochloropsis gaditana|type=polypeptide|length=216bp
MARLKLSPGSHSIMLRYLVRPPAHRAGPGYSFHHVIIHALPFPHDRAAEM
VSALLPPSISGAWQKDLESARRDADLFPHHDNLPATGYNFNNVDLLVRLD
RAQTLSRQIFAQALHAWLAKEQEAIDPSSPPPSLPSSFTFNADAARAIDD
GQAPVSVLVVNTLGWPRNATVTIRVSRSDLKVTCSLQPTMHTANTTHPEA
PHSSLFPAAPGPDRGL
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mRNA from alignment at CM002455.1:93409..94472+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna29 ID=rna29|Name=rna29|organism=Nannochloropsis gaditana|type=mRNA|length=1064bp|location=Sequence derived from alignment at CM002455.1:93409..94472+ (Nannochloropsis gaditana)
ATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACGGTA
CCTCgtgcgtcctcccgcccacagGGCAGGGCCTGGGTACTCATTCCATC
ACGTCAtcatccacgccctccccttcccccatgaCAGGGCCGCCGAAATG
GTGtccgcccttctccctccttcgattTCTGGAGCCTGGCAAAAGGACCT
TGAGAGCGCTCGGTGAGGACCTTATCcgcccaaggcctccctccctcccc
tccctcccctcctttcctcctgtttttggttcctttcctttccaccaTTT
CATCAATACTCTTTTTCTGATACATCCCTTTTGTGACTTCACAGCGTatc
cccttccctgcttttgccctccctccctccctccctccctccctcccttc
ctccctccctcccgtccaaCCGCAGCCGCGACGCggacctcttcccccac
cacgACAACCTGCCGGCGACAGGATACAACTTTAACAACGTCGATTTGCT
CGTCCGCCTCGACCGGGCGCAGAcgctttcgcgccaaatcTTCGCCCAGG
CCCTGCATGCCTGGTTGGCaaaggagcaggaagccatcgacccgtcctcc
cccccgccctccctcccttcctccttcaccttcaaCGCAGACGCGGCGCG
CGCCATAGACGACGGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCT
TAGGATGGCCCCggtaaggaggaaggaggacaagacacaggaaagggcgg
gaaacgTCAACTCCCGTGCTCGagcgtccttttccccctttctcatcccc
acctgcctccctccctgtcagGAATGCCACGGTTACCATTCGCGTCTCTC
GGAGCGACTTGAAGGTGACCTGCAGCCTCCAGCCCACCATGCATACCGCC
AACACGACTCATCCCGAGGCGCCCcactcttccctttttccagcgTCCCT
GCCCTTGCCCGCCCAAACCACGCCAGACCCCGACCAGGACGGGgcatttt
tcctctcttttcccctctctttgccCGCCTTGGGAGGGCGCCAGGTCCAG
ATCGCGGTCTGTGA
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Coding sequence (CDS) from alignment at CM002455.1:93409..94472+

>rna29 ID=rna29|Name=rna29|organism=Nannochloropsis gaditana|type=CDS|length=2604bp|location=Sequence derived from alignment at CM002455.1:93409..94472+ (Nannochloropsis gaditana)
ATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACGGTA
CCTCgtgcgtcctcccgcccacagGGCAGGGCCTGGGTACTCATTCCATC
ACGTCAtcatccacgccctccccttcccccatgaCAGGGCCGCCGAAATG
GTGtccgcccttctccctccttcgattTCTGGAGCCTGGCAAAAGGACCT
TGAGAGCGCTCGCCGCGACGCggacctcttcccccaccacgACAACCTGC
CGGCGACAGGATACAACTTTAACAACGTCGATTTGCTCGTCCGCCTCGAC
CGGGCGCAGAcgctttcgcgccaaatcTTCGCCCAGGCCCTGCATGCCTG
GTTGGCaaaggagcaggaagccatcgacccgtcctcccccccgccctccc
tcccttcctccttcaccttcaaCGCAGACGCGGCGCGCGCCATAGACGAC
GGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCTTAGGATGGCCCCg
GAATGCCACGGTTACCATTCGCGTCTCTCGGAGCGACTTGAAGGTGACCT
GCAGCCTCCAGCCCACCATGCATACCGCCAACACGACTCATCCCGAGGCG
CCCcactcttccctttttccagcGGCGCCAGGTCCAGATCGCGGTCTGTG
AATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACGGT
ACCTCgtgcgtcctcccgcccacagGGCAGGGCCTGGGTACTCATTCCAT
CACGTCAtcatccacgccctccccttcccccatgaCAGGGCCGCCGAAAT
GGTGtccgcccttctccctccttcgattTCTGGAGCCTGGCAAAAGGACC
TTGAGAGCGCTCGCCGCGACGCggacctcttcccccaccacgACAACCTG
CCGGCGACAGGATACAACTTTAACAACGTCGATTTGCTCGTCCGCCTCGA
CCGGGCGCAGAcgctttcgcgccaaatcTTCGCCCAGGCCCTGCATGCCT
GGTTGGCaaaggagcaggaagccatcgacccgtcctcccccccgccctcc
ctcccttcctccttcaccttcaaCGCAGACGCGGCGCGCGCCATAGACGA
CGGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCTTAGGATGGCCCC
gGAATGCCACGGTTACCATTCGCGTCTCTCGGAGCGACTTGAAGGTGACC
TGCAGCCTCCAGCCCACCATGCATACCGCCAACACGACTCATCCCGAGGC
GCCCcactcttccctttttccagcGGCGCCAGGTCCAGATCGCGGTCTGT
GAATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACGG
TACCTCgtgcgtcctcccgcccacagGGCAGGGCCTGGGTACTCATTCCA
TCACGTCAtcatccacgccctccccttcccccatgaCAGGGCCGCCGAAA
TGGTGtccgcccttctccctccttcgattTCTGGAGCCTGGCAAAAGGAC
CTTGAGAGCGCTCGCCGCGACGCggacctcttcccccaccacgACAACCT
GCCGGCGACAGGATACAACTTTAACAACGTCGATTTGCTCGTCCGCCTCG
ACCGGGCGCAGAcgctttcgcgccaaatcTTCGCCCAGGCCCTGCATGCC
TGGTTGGCaaaggagcaggaagccatcgacccgtcctcccccccgccctc
cctcccttcctccttcaccttcaaCGCAGACGCGGCGCGCGCCATAGACG
ACGGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCTTAGGATGGCCC
CgGAATGCCACGGTTACCATTCGCGTCTCTCGGAGCGACTTGAAGGTGAC
CTGCAGCCTCCAGCCCACCATGCATACCGCCAACACGACTCATCCCGAGG
CGCCCcactcttccctttttccagcGGCGCCAGGTCCAGATCGCGGTCTG
TGAATGGCGCGTCTTAAGTTGTCACCGGGCTCCCATTCGATCATGTTACG
GTACCTCgtgcgtcctcccgcccacagGGCAGGGCCTGGGTACTCATTCC
ATCACGTCAtcatccacgccctccccttcccccatgaCAGGGCCGCCGAA
ATGGTGtccgcccttctccctccttcgattTCTGGAGCCTGGCAAAAGGA
CCTTGAGAGCGCTCGCCGCGACGCggacctcttcccccaccacgACAACC
TGCCGGCGACAGGATACAACTTTAACAACGTCGATTTGCTCGTCCGCCTC
GACCGGGCGCAGAcgctttcgcgccaaatcTTCGCCCAGGCCCTGCATGC
CTGGTTGGCaaaggagcaggaagccatcgacccgtcctcccccccgccct
ccctcccttcctccttcaccttcaaCGCAGACGCGGCGCGCGCCATAGAC
GACGGGCAAGCCCCCGTATCCGTGTTGGTTGTAAACACCTTAGGATGGCC
CCgGAATGCCACGGTTACCATTCGCGTCTCTCGGAGCGACTTGAAGGTGA
CCTGCAGCCTCCAGCCCACCATGCATACCGCCAACACGACTCATCCCGAG
GCGCCCcactcttccctttttccagcGGCGCCAGGTCCAGATCGCGGTCT
GTGA
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Synonyms
Publications