EWM30644.1, cds29 (CDS) Nannochloropsis gaditana

Overview
NameEWM30644.1
Unique Namecds29
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002455.1:93409..93620 +
Alignment locationCM002455.1:93834..94121 +
Alignment locationCM002455.1:94230..94352 +
Alignment locationCM002455.1:94445..94472 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM30644.1
ProductGlycosyl hydrolase, family 13, all-beta
Orig transcript idgnl|cribi|Naga_101467g1.8957.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002455.1supercontigCM002455.1:93409..93620 +
CM002455.1supercontigCM002455.1:93834..94121 +
CM002455.1supercontigCM002455.1:94230..94352 +
CM002455.1supercontigCM002455.1:94445..94472 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0005488binding
GO:0008270zinc ion binding
GO:0004553hydrolase activity, hydrolyzing O-glycosyl compounds
Vocabulary: INTERPRO
TermDefinition
IPR028995Glyco_hydro_57/38_cen
IPR015341Glyco_hydro_38_cen
IPR013780Glyco_hydro_13_b
Homology
[Close]
BLAST of EWM30644.1 vs. NCBI_GenBank
Match: gi|585113332|gb|EWM30644.1| (Glycosyl hydrolase, family 13, all-beta [Nannochloropsis gaditana])

HSP 1 Score: 437.187 bits (1123), Expect = 3.889e-155
Identity = 216/216 (100.00%), Postives = 216/216 (100.00%), Query Frame = 0 
Query:    1 MARLKLSPGSHSIMLRYLVRPPAHRAGPGYSFHHVIIHALPFPHDRAAEMVSALLPPSISGAWQKDLESARRDADLFPHHDNLPATGYNFNNVDLLVRLDRAQTLSRQIFAQALHAWLAKEQEAIDPSSPPPSLPSSFTFNADAARAIDDGQAPVSVLVVNTLGWPRNATVTIRVSRSDLKVTCSLQPTMHTANTTHPEAPHSSLFPAAPGPDRGL 216
            MARLKLSPGSHSIMLRYLVRPPAHRAGPGYSFHHVIIHALPFPHDRAAEMVSALLPPSISGAWQKDLESARRDADLFPHHDNLPATGYNFNNVDLLVRLDRAQTLSRQIFAQALHAWLAKEQEAIDPSSPPPSLPSSFTFNADAARAIDDGQAPVSVLVVNTLGWPRNATVTIRVSRSDLKVTCSLQPTMHTANTTHPEAPHSSLFPAAPGPDRGL
Sbjct:    1 MARLKLSPGSHSIMLRYLVRPPAHRAGPGYSFHHVIIHALPFPHDRAAEMVSALLPPSISGAWQKDLESARRDADLFPHHDNLPATGYNFNNVDLLVRLDRAQTLSRQIFAQALHAWLAKEQEAIDPSSPPPSLPSSFTFNADAARAIDDGQAPVSVLVVNTLGWPRNATVTIRVSRSDLKVTCSLQPTMHTANTTHPEAPHSSLFPAAPGPDRGL 216
The following BLAST results are available for this feature:
BLAST of EWM30644.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1
Match NameE-valueIdentityDescription
gi|585113332|gb|EWM30644.1|3.889e-155100.00Glycosyl hydrolase, family 13, all-beta [Nannochlo... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna29rna29Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications