rna2897, rna2897 (mRNA) Nannochloropsis gaditana

Overview
Namerna2897
Unique Namerna2897
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1552
Alignment locationCM002460.1:201720..203717 +

Link to JBrowse

Properties
Property NameValue
ProductNADH-ubiquinone reductase complex 1 MLRQ subunit
Orig transcript idgnl|cribi|Naga_101199g3.956.mrna
Orig protein idgnl|cribi|Naga_101199g3.956
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:201720..203717 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101199g3gene2776Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2897rna2897-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27784.1cds2889Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2897 ID=rna2897|Name=rna2897|organism=Nannochloropsis gaditana|type=mRNA|length=1552bp
GAAAACATCTTCGACCTCCCCCGTTCCAGGGGACAATGCTGTGGACATAA
TAGTTTCGAGGCTTGTACATCTCTGTGCACCTGCGTTGTGCGAAACGATG
CGGGTTGATTTTTTTCTGAAAAAACTTTGTATTGATGGTTGGTAGCAGGC
AGAGTGGGCGAATTACAGTCGCCACGGAGTTACACCTTCCTGCCTCCTGC
TCATACTTTTTTTCATTCAGCAACAACACAAACATTCCAGCAAAAAAGAC
ATGGCATCACCAGACACAGATAATAATATCGCCACCATGTGTGCCATCGG
CCAAACGATCCGGGTACGGCTAGGACTTGATTCCTCTTCGCGACATTGTC
GTGCGACCATCCTCACGCTCAACGAGGGGTGCCCGCACACCGTGGATGTT
CTATTTCAAGACGGGATGGACTGGGCGGAAGGGAAGGAGGAAGAGGCGCA
AGTACCTCTAGATCGACTGTTCGGTTTAGAGCCGTTCGAAGAAGGAAGAG
ATGCAGAGAGAGTGGCGATAGGCAAAGTGGGTGGGACAGGCGCTGAAGAG
AGGCGAGAGAGGGCGCAGCGGCTCCGGGAGCAGGGTAATCAATTGTTTAC
TAAATACAAAGATTACGGAGCAGCTTTGGAGTTTTACAGCGAAGCGTTGG
AGATTCTAGGTCCGCGCGAGGGAAAGGGCGGCTTACGTGTCGGTACGTTG
ATGTAGAATCTATCCTGGGGCAGGCATGTAGTGTGAAGGAGAGTGCGTCC
ATGGCCATCATTTTCGGTTTCTTGGCACGCATACCGGCCAAGCGTGCAGT
CGGTGAATAAATGGACGTGACTGACATCGGTGCATGGCAAGCAAGGATAC
AAGGAGATGCCGGCATCCCCTTGTGCACCTAAGACAGACAGGGAGGCAGT
AATAATCGCTTCGAGTGAAATATTCGCACAAAGTAACGAAGGCCCTGTGA
GCGTCTTGGAGGGTAATACCCAGGCCTCCGATGTTATGATGACCCCTGTC
CGTGACTTCCAGTGTCCATACCCTCGCCGTAGAATTGTAAAAACCTAAGC
GTAGGATCCGTCGTGTGACTTCCCCACTCTCCTACCTCCTCACTCCTCCG
CGCATATCACCCTTCTCAGGGGCCTCCGTCCTCATCACCGCCCCCGGCAC
CCGTCGAGAGAGCCCTCGGGAGAAGCAGGCCGCCATTGCCCGGGCCCGTG
GCCGCCAGAAAGAGCCGAACGGGGGCGCCGCGTCTCGTAAACGGCAATTG
CAGCCTCGCGCCGGCACGGTAGCGGATGTAAATGCAGACAACCGCCTGGT
GGATGTACTTTATGACCTCGCACACTGCGACGGTGGGGAAGGAGGGGCGG
TGGGGGAAGAAGGGGAGGAAGACGACGTCCCTTTTTCGCGCCTCCTCCCT
CCCGCCCTCCCTCCCTTCCTCCAACTCGAGCAGGCCAAACTCCTTCTCAA
CGTAGCCCGCTGCCACCTCAAAAGCCATATGGGCCGTCTCTTGGAGGCCC
AGACCAACTTGAGCCTGGCGATAGCCCTTCTTTTCCCTTGGGTCAGGGAA
GA
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protein sequence of rna2897

>rna2897-protein ID=rna2897-protein|Name=rna2897|organism=Nannochloropsis gaditana|type=polypeptide|length=139bp
MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFL
PAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPII
VIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK
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mRNA from alignment at CM002460.1:201720..203717+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2897 ID=rna2897|Name=rna2897|organism=Nannochloropsis gaditana|type=mRNA|length=1998bp|location=Sequence derived from alignment at CM002460.1:201720..203717+ (Nannochloropsis gaditana)
GCGGGAAAGTCGGAAAAGCAGCGAGAGACATATGGCAGCGGAGGAGACTT
CAAGGACACCAATAGCTTGCCCAAAATACAGGGCTACATCCGTAACGGCG
CTGAAAACGACATAAATTGACCGATCTATCCATGAAATACTGTGTATTTG
GTGTGAACGAAAGAAATTGCGGTGCACGCTGGGTTTAAatacaaggaggg
caagttGAAGCCGGGGGGTTGCCATATGGTTGGATTCCCCCACGATGGTC
ATTATACAATGCCGTGTGAATCCGTCAAAATCGTGTGCTCAAAATGCATG
TACATACGTTCATTCTTTCCATGGAGCTCATCAAAGCTGCGCCTTGGCCA
TAGATTCTTTTGGATTTTTGTTTCCGATCGATGCTTTTTCCCCTCTACAC
TCGCTCGTTCGCCTTCATCGTCCTTCTCATACCCACATGCTTTTTCTCAC
CGCACCCGCTTTTATTATCGCAATGCAGATTGAGCATGCATAGCCGCATC
TTCACATCGGCCATTCGCCCTGCTTTTTTGCCCGCTGGCACCCTCTCTCT
GACGGGACCTGCAGCACGGTGCGTTGAACGAATAGGAACAATATGTCCCA
ATACCTCCATGTGGTGCAGGCACATCTCACCCTTGCCCCCCTTTCGATTT
CGTGTTTTCCACCCCAGCATGGGCAGCGTAGTGCGACAACAAAGCAGCAC
ACGGTCTCCAGTCCAGTACAGCTCGCGAAAGAATTTCAAGCAGGTGAGGA
TGCGGATCTGCGTAAATCGAACACGCATTTGTTGAATTTCCAAGACGGAA
GGGATAGAAGATTCAGtagagaggagagagcacTGATCCCTCTGTCTATC
CCTACGGATGTCGAAGGAAAGTAAAGCCAAGACGAGGGCTCATTTGGCGC
CCTTGCCGAGTAAAGTCTTGTTTTCTGTCCGCCACCCGATTCCTTGTTTC
GTGTCCAATCCGAAACTTGCAGAGAGCGCATCACTCCCTACCGTGCTCTC
ACCCTCTgtgcttctcttcctctcttccgtgtattcccctttccctcgcc
cagACTTGGCTGATGGATGGAGCAACATACCCCATCATTGTCATCATTAC
CTTCGCCGTCACCATGTGCAGTGGCTTCACTGCGTGAGTAACCAAAGAGA
GTCAGCAGGCCCAGGTAATCATGGAACCAAGTCatgaccctccccctccc
tttttccccgccctccttgcctccctcctatcAGATACAAGTTCCTCCAC
AGCCCGGACAACCGCGTGGACCCGCGCAAGCGCACCTCCTTGATGCGAGA
CTGGAAGTAGGCCTAGGCGCCTagcagaagggaaggatgcgAGACTGGAA
GTAGGCCTAGGCGCATAGCAGAAGGGAAttcgtggagggaaggagaagag
acatGGAGAAGGTAGGAAAGAATGGGTGGATATAGAGGAGAAAATACATG
GAGGGGGGCCATGACTCACGCTGTGGTCATGAGGCGACTGTCGCCGGCAT
TGGCGAAGTAGtcgaggtggggggagaagaaatcGAAGGGGTCCTGGAAT
CGGAAAAATGGCATGACGAGCCAGAAAGTGGACGCCTAAGGAAGACACTC
TTAGGGtgtgggagagagaagaaggtaGTGGCAtcggggatgggagggga
ggggaacgacGGAGTGTATGATATGCCGCGATGGGAGACAGGCCCTGGAA
ATGGTGAGCCAGGGATAAGCCGCGTTTTTACGGAAGCTGGGTCGTCCGCT
ATGAGAAGAGATACAAAGGATAAGCGGTAGGAAACAATAGGAATGAAACG
ACGTGTGCAGATGCGCCTTTGAGGGGGGCGTTTTGTGATGCCTGGGAcag
ctttcttccttttcttgttTCAAGCTGAAGTATGCTTTGAAGGGAACGTG
CAGCAGCACCGTGTATACCACCTTCGTCCCTTAAATAATTTCACAAATCA
TTTACAGCATGGGGCCCCTGGCCTTCGCCCGCATCATTATCCACATCC
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Coding sequence (CDS) from alignment at CM002460.1:201720..203717+

>rna2897 ID=rna2897|Name=rna2897|organism=Nannochloropsis gaditana|type=CDS|length=1680bp|location=Sequence derived from alignment at CM002460.1:201720..203717+ (Nannochloropsis gaditana)
ATGCTTTTTCCCCTCTACACTCGCTCGTTCGCCTTCATCGTCCTTCTCAT
ACCCACATGCTTTTTCTCACCGCACCCGCTTTTATTATCGCAATGCAGAT
TGAGCATGCATAGCCGCATCTTCACATCGGCCATTCGCCCTGCTTTTTTG
CCCGCTGGCACCCTCTCTCTGACGGGACCTGCAGCACGCATGGGCAGCGT
AGTGCGACAACAAAGCAGCACACGGTCTCCAGTCCAGTACAGCTCGCGAA
AGAATTTCAAGCAGACTTGGCTGATGGATGGAGCAACATACCCCATCATT
GTCATCATTACCTTCGCCGTCACCATGTGCAGTGGCTTCACTGCATACAA
GTTCCTCCACAGCCCGGACAACCGCGTGGACCCGCGCAAGCGCACCTCCT
TGATGCGAGACTGGAAGTAGATGCTTTTTCCCCTCTACACTCGCTCGTTC
GCCTTCATCGTCCTTCTCATACCCACATGCTTTTTCTCACCGCACCCGCT
TTTATTATCGCAATGCAGATTGAGCATGCATAGCCGCATCTTCACATCGG
CCATTCGCCCTGCTTTTTTGCCCGCTGGCACCCTCTCTCTGACGGGACCT
GCAGCACGCATGGGCAGCGTAGTGCGACAACAAAGCAGCACACGGTCTCC
AGTCCAGTACAGCTCGCGAAAGAATTTCAAGCAGACTTGGCTGATGGATG
GAGCAACATACCCCATCATTGTCATCATTACCTTCGCCGTCACCATGTGC
AGTGGCTTCACTGCATACAAGTTCCTCCACAGCCCGGACAACCGCGTGGA
CCCGCGCAAGCGCACCTCCTTGATGCGAGACTGGAAGTAGATGCTTTTTC
CCCTCTACACTCGCTCGTTCGCCTTCATCGTCCTTCTCATACCCACATGC
TTTTTCTCACCGCACCCGCTTTTATTATCGCAATGCAGATTGAGCATGCA
TAGCCGCATCTTCACATCGGCCATTCGCCCTGCTTTTTTGCCCGCTGGCA
CCCTCTCTCTGACGGGACCTGCAGCACGCATGGGCAGCGTAGTGCGACAA
CAAAGCAGCACACGGTCTCCAGTCCAGTACAGCTCGCGAAAGAATTTCAA
GCAGACTTGGCTGATGGATGGAGCAACATACCCCATCATTGTCATCATTA
CCTTCGCCGTCACCATGTGCAGTGGCTTCACTGCATACAAGTTCCTCCAC
AGCCCGGACAACCGCGTGGACCCGCGCAAGCGCACCTCCTTGATGCGAGA
CTGGAAGTAGATGCTTTTTCCCCTCTACACTCGCTCGTTCGCCTTCATCG
TCCTTCTCATACCCACATGCTTTTTCTCACCGCACCCGCTTTTATTATCG
CAATGCAGATTGAGCATGCATAGCCGCATCTTCACATCGGCCATTCGCCC
TGCTTTTTTGCCCGCTGGCACCCTCTCTCTGACGGGACCTGCAGCACGCA
TGGGCAGCGTAGTGCGACAACAAAGCAGCACACGGTCTCCAGTCCAGTAC
AGCTCGCGAAAGAATTTCAAGCAGACTTGGCTGATGGATGGAGCAACATA
CCCCATCATTGTCATCATTACCTTCGCCGTCACCATGTGCAGTGGCTTCA
CTGCATACAAGTTCCTCCACAGCCCGGACAACCGCGTGGACCCGCGCAAG
CGCACCTCCTTGATGCGAGACTGGAAGTAG
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Synonyms
Publications