EWM27784.1, cds2889 (CDS) Nannochloropsis gaditana
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Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|585110073|gb|EWM27784.1| (NADH-ubiquinone reductase complex 1 MLRQ subunit [Nannochloropsis gaditana]) HSP 1 Score: 284.263 bits (726), Expect = 3.752e-97 Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query: 1 MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139
MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK
Sbjct: 1 MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|1210527684|dbj|GAX13670.1| (hypothetical protein FisN_14Lh314 [Fistulifera solaris]) HSP 1 Score: 67.0106 bits (162), Expect = 4.441e-12 Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 0
Query: 51 PAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDW 138
P L+ T A R+ + + SS P +KNF++ WL D +TYP+I I++ A + C+GF AYK + PD R+ + + ++RDW
Sbjct: 3 PFARLTATKIAPRVATRAQSTSSVAVP-----KKNFQKDWLSDPSTYPLIAIMSIAASGCAGFMAYKLTYCPDVRITNKTKGKVLRDW 85
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|397605211|gb|EJK58923.1| (hypothetical protein THAOC_20913 [Thalassiosira oceanica]) HSP 1 Score: 62.003 bits (149), Expect = 1.275e-9 Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 0
Query: 72 SSTRSPVQYSSRKNFKQ----TWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139
+ +R+ + KN Q WL D YP+++++TFA TMC GF Y +SPD R+ P +R L+R W+
Sbjct: 66 AESRAHLHLGMPKNADQLKRSIWLSDPGAYPVMIVVTFACTMCCGFMGYHTYNSPDVRITPGRRQVLLRTWE 137
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|1210517597|dbj|GAX23512.1| (hypothetical protein FisN_14Hh314 [Fistulifera solaris]) HSP 1 Score: 56.225 bits (134), Expect = 1.093e-7 Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 0
Query: 61 AARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKR 131
A ++ S V + +S + +KNF + WL D +TYP+I I++ A + C+GF AYK + PD R+ + +
Sbjct: 9 ATKVASRVVVATRAQSTLVAVPKKNFSKDWLSDPSTYPLIAIMSIAASGCAGFMAYKLTYCPDVRITNKTK 79 The following BLAST results are available for this feature:
BLAST of EWM27784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 4
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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