EWM27784.1, cds2889 (CDS) Nannochloropsis gaditana

Overview
NameEWM27784.1
Unique Namecds2889
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:202100..202287 +
Alignment locationCM002460.1:202387..202462 +
Alignment locationCM002460.1:202773..202852 +
Alignment locationCM002460.1:202954..203029 +

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Properties
Property NameValue
Protein idEWM27784.1
ProductNADH-ubiquinone reductase complex 1 MLRQ subunit
Orig transcript idgnl|cribi|Naga_101199g3.956.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:202100..202287 +
CM002460.1supercontigCM002460.1:202387..202462 +
CM002460.1supercontigCM002460.1:202773..202852 +
CM002460.1supercontigCM002460.1:202954..203029 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Cellular Component
TermDefinition
GO:0016020membrane
Vocabulary: INTERPRO
TermDefinition
IPR010530B12D
Homology
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|585110073|gb|EWM27784.1| (NADH-ubiquinone reductase complex 1 MLRQ subunit [Nannochloropsis gaditana])

HSP 1 Score: 284.263 bits (726), Expect = 3.752e-97
Identity = 139/139 (100.00%), Postives = 139/139 (100.00%), Query Frame = 0
Query:    1 MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139
            MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK
Sbjct:    1 MLFPLYTRSFAFIVLLIPTCFFSPHPLLLSQCRLSMHSRIFTSAIRPAFLPAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139          
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|1210527684|dbj|GAX13670.1| (hypothetical protein FisN_14Lh314 [Fistulifera solaris])

HSP 1 Score: 67.0106 bits (162), Expect = 4.441e-12
Identity = 32/88 (36.36%), Postives = 51/88 (57.95%), Query Frame = 0
Query:   51 PAGTLSLTGPAARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDW 138
            P   L+ T  A R+ +  +  SS   P     +KNF++ WL D +TYP+I I++ A + C+GF AYK  + PD R+  + +  ++RDW
Sbjct:    3 PFARLTATKIAPRVATRAQSTSSVAVP-----KKNFQKDWLSDPSTYPLIAIMSIAASGCAGFMAYKLTYCPDVRITNKTKGKVLRDW 85          
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|397605211|gb|EJK58923.1| (hypothetical protein THAOC_20913 [Thalassiosira oceanica])

HSP 1 Score: 62.003 bits (149), Expect = 1.275e-9
Identity = 27/72 (37.50%), Postives = 41/72 (56.94%), Query Frame = 0
Query:   72 SSTRSPVQYSSRKNFKQ----TWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKRTSLMRDWK 139
            + +R+ +     KN  Q     WL D   YP+++++TFA TMC GF  Y   +SPD R+ P +R  L+R W+
Sbjct:   66 AESRAHLHLGMPKNADQLKRSIWLSDPGAYPVMIVVTFACTMCCGFMGYHTYNSPDVRITPGRRQVLLRTWE 137          
BLAST of EWM27784.1 vs. NCBI_GenBank
Match: gi|1210517597|dbj|GAX23512.1| (hypothetical protein FisN_14Hh314 [Fistulifera solaris])

HSP 1 Score: 56.225 bits (134), Expect = 1.093e-7
Identity = 25/71 (35.21%), Postives = 42/71 (59.15%), Query Frame = 0
Query:   61 AARMGSVVRQQSSTRSPVQYSSRKNFKQTWLMDGATYPIIVIITFAVTMCSGFTAYKFLHSPDNRVDPRKR 131
            A ++ S V   +  +S +    +KNF + WL D +TYP+I I++ A + C+GF AYK  + PD R+  + +
Sbjct:    9 ATKVASRVVVATRAQSTLVAVPKKNFSKDWLSDPSTYPLIAIMSIAASGCAGFMAYKLTYCPDVRITNKTK 79          
The following BLAST results are available for this feature:
BLAST of EWM27784.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 4
Match NameE-valueIdentityDescription
gi|585110073|gb|EWM27784.1|3.752e-97100.00NADH-ubiquinone reductase complex 1 MLRQ subunit [... [more]
gi|1210527684|dbj|GAX13670.1|4.441e-1236.36hypothetical protein FisN_14Lh314 [Fistulifera sol... [more]
gi|397605211|gb|EJK58923.1|1.275e-937.50hypothetical protein THAOC_20913 [Thalassiosira oc... [more]
gi|1210517597|dbj|GAX23512.1|1.093e-735.21hypothetical protein FisN_14Hh314 [Fistulifera sol... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2897rna2897Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications