rna2896, rna2896 (mRNA) Nannochloropsis gaditana

Overview
Namerna2896
Unique Namerna2896
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length675
Alignment locationCM002460.1:198603..200154 +

Link to JBrowse

Properties
Property NameValue
ProductElongated TPR repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100605g4.3154.mrna
Orig protein idgnl|cribi|Naga_100605g4.3154
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:198603..200154 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100605g4gene2775Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2896rna2896-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27786.1cds2888Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2896 ID=rna2896|Name=rna2896|organism=Nannochloropsis gaditana|type=mRNA|length=675bp
ATGGCGCGTATGAAGACGGCCAAGGGCACTCTCGGACGGGGAATTGTGGG
CGGGAAAGGCACATCTCCAAGAAAAGTGCCGAGAAAGCAAGCTTCACCAG
CACGGGGAGGTGCAGGAGCTGAGAGAGGGAAGGACAAAGGAGACGAAGAG
CCCAAAAAGCGTCGGGCGCGTCCCGGAATGCGGGCCTTGCGCGAGATAAG
ACAATACCAGCGGACAACGGAACTCCTCTTGCGCCGGCTGCCCTTCGCCC
GTTTGGTCCGGGAGGTGCAGGGGGAGATTAGCACGAAGCAGTATCGGTGG
CAGGCGAACTCCCTCTTAGCCTTGCAGGAAGCGGCGGAGGCCCATCTGGT
CCATTTGTTTGAGGACGCGAACCTGTGCGCGATCCATGCCAAGAGGGTGA
CCATTATGCCGAAAGATATGCAGCTTGCAAGGCGGATCCGGGGGCCTCTA
CGGGACCATCCACCACCACACATTGTGCCATTCATCTTCAAGTTATCTTT
TGTTCCCCCCCTCCTACGGGTGCTGAGGCGCGAACGTCCGGGAAGGGAGG
AAGAGGAAGAGGGAGGGGCTTACGGAGGAGGGGAGGGAGGTCAAGGCAGA
AGGGTGGCAAATTCTACGTGTCACGGTCATTTATGCCTTATGCCCGTAAT
GCGTATGGGAACGCTGGATATATGA
back to top

protein sequence of rna2896

>rna2896-protein ID=rna2896-protein|Name=rna2896|organism=Nannochloropsis gaditana|type=polypeptide|length=151bp
MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDV
LFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEE
RRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGTL
M
back to top

mRNA from alignment at CM002460.1:198603..200154+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2896 ID=rna2896|Name=rna2896|organism=Nannochloropsis gaditana|type=mRNA|length=1552bp|location=Sequence derived from alignment at CM002460.1:198603..200154+ (Nannochloropsis gaditana)
GAAAACAtcttcgacctcccccgTTCCAGGGGACAATGCTGTGGACATAA
TAGTTTCGAGGCTTGTACATCTCTGTGCACCTGCGTTGTGCGAAACGATG
CGGGTTGATTTTTTTCTGAAAAAACTTTGTATTGATGGTTGGTAGCAGGC
AGAGTGGGCGAATTACAGTCGCCACGGAGTTAcaccttcctgcctcctgc
tcatACTTTTTTTCATTCAGCAACAACACAAACATTCCAGCAAAAAAGAC
ATGGCATCACCAGACACAGATAATAATATCGCCACCATGTGTGCCATCGG
CCAAACGATCCGGGTACGGCTAGGACTTGATTCCTCTTCGCGACATTGTC
GTGCGACCATCCTCACGCTCAACGAGGGGTGCCCGCACACCGTGGATGTT
CTATTTCAAGACGGGATGGActgggcggaagggaaggaggaagaggcgca
aGTACCTCTAGATCGACTGTTCGGTTTAGAGCCGttcgaagaaggaagag
atgcaGAGAGAGTGGCGATAGGCAAAGTGGGTGGGACAGGCGCTGAAgag
aggcgagagagggcgCAGCGGCTCCGGGAGCAGGGTAATCAATTGTTTAC
TAAATACAAAGATTACGGAGCAGCTTTGGAGTTTTACAGCGAAGCGTTGG
AGATTCTAGGTCCgcgcgagggaaagggcggctTACGTGTCGGTACGTTG
ATGTAGAATCTATCCTGGGGCAGGCATGTAGTGTGAAGGAGAGTGCGTCC
ATGGCCATCATTTTCGGTTTCTTGGCACGCATACCGGCCAAGCGTGCAGT
CGGTGAATAAATGGACGTGACTGACATCGGTGCATGGCAAGCAAGGATAC
AAGGAGATGCCGGCATCCCCTTGTGCACCTAAGACAGACAGGGAGGCAGT
AATAATCGCTTCGAGTGAAATATTCGCACAAAGTAACGAAGGCCCTGTGA
GCGTCTTGGAGGGTAATACCCAGGCCTCCGATGTTATGATGACCCCTGTC
CGTGACTTCCAGTGTCCATACCCTCGCCGTAGAATTGTAAAAACCTAAGC
GTAGGATCCGTCGTGTGACTTCCCCACTCTCCtacctcctcactcctccg
CGCATATCACCCTTCTCAggggcctccgtcctcatcacCGCCCCCGGCAC
CCGTCGAGAGAGCCCTCGGGAGAAGCAGGCCGCCATTGCCCGGGCCCGTG
GCCGCCAGAAAGAGCCGAACGGGGGCGCCGCGTCTCGTAAACGGCAATTG
CAGCCTCGCGCCGGCACGGTAGCGGATGTAAATGCAGACAACCGCCTGGT
GGATGTACTTTATGACCTCGCACACTGCgacggtggggaaggaggggcgg
tgggggaagaaggggaggaagacgacgtcCCTTtttcgcgcctcctccct
cccgccctccctcccttcctccaactcgAGCAGGCCAAACTCCTTCTCAA
CGTAGCCCGCTGCCACCTCAAAAGCCATATGGGCCGTCTCTTGGAGGCCC
AGACCAACTTGAGCCTGGCGAtagcccttcttttcccttgggtcagggaa
ga
back to top

Coding sequence (CDS) from alignment at CM002460.1:198603..200154+

>rna2896 ID=rna2896|Name=rna2896|organism=Nannochloropsis gaditana|type=CDS|length=456bp|location=Sequence derived from alignment at CM002460.1:198603..200154+ (Nannochloropsis gaditana)
ATGGCATCACCAGACACAGATAATAATATCGCCACCATGTGTGCCATCGG
CCAAACGATCCGGGTACGGCTAGGACTTGATTCCTCTTCGCGACATTGTC
GTGCGACCATCCTCACGCTCAACGAGGGGTGCCCGCACACCGTGGATGTT
CTATTTCAAGACGGGATGGActgggcggaagggaaggaggaagaggcgca
aGTACCTCTAGATCGACTGTTCGGTTTAGAGCCGttcgaagaaggaagag
atgcaGAGAGAGTGGCGATAGGCAAAGTGGGTGGGACAGGCGCTGAAgag
aggcgagagagggcgCAGCGGCTCCGGGAGCAGGGTAATCAATTGTTTAC
TAAATACAAAGATTACGGAGCAGCTTTGGAGTTTTACAGCGAAGCGTTGG
AGATTCTAGGTCCgcgcgagggaaagggcggctTACGTGTCGGTACGTTG
ATGTAG
back to top
Synonyms
Publications