EWM27786.1, cds2888 (CDS) Nannochloropsis gaditana

Overview
NameEWM27786.1
Unique Namecds2888
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:198853..199308 +

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Properties
Property NameValue
Protein idEWM27786.1
ProductElongated TPR repeat-containing domain protein
Orig transcript idgnl|cribi|Naga_100605g4.3154.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:198853..199308 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR023114Elongated_TPR_rpt_dom
Homology
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BLAST of EWM27786.1 vs. NCBI_GenBank
Match: gi|585110076|gb|EWM27786.1| (Elongated TPR repeat-containing domain protein [Nannochloropsis gaditana])

HSP 1 Score: 309.686 bits (792), Expect = 7.940e-107
Identity = 151/151 (100.00%), Postives = 151/151 (100.00%), Query Frame = 0 
Query:    1 MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGTLM 151
            MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGTLM
Sbjct:    1 MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVGTLM 151
[Close]
BLAST of EWM27786.1 vs. NCBI_GenBank
Match: gi|553178599|ref|XP_005852578.1| (hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526] >gi|422295953|gb|EKU23252.1| hypothetical protein NGA_0704700, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 306.22 bits (783), Expect = 9.633e-105
Identity = 148/148 (100.00%), Postives = 148/148 (100.00%), Query Frame = 0 
Query:    1 MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVG 148
            MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVG
Sbjct:    1 MASPDTDNNIATMCAIGQTIRVRLGLDSSSRHCRATILTLNEGCPHTVDVLFQDGMDWAEGKEEEAQVPLDRLFGLEPFEEGRDAERVAIGKVGGTGAEERRERAQRLREQGNQLFTKYKDYGAALEFYSEALEILGPREGKGGLRVG 148
The following BLAST results are available for this feature:
BLAST of EWM27786.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110076|gb|EWM27786.1|7.940e-107100.00Elongated TPR repeat-containing domain protein [Na... [more]
gi|553178599|ref|XP_005852578.1|9.633e-105100.00hypothetical protein NGA_0704700, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2896rna2896Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications