|
|
Properties
| Property Name | Value |
|---|
| Product | hypothetical protein |
| Orig transcript id | gnl|cribi|Naga_100149g5.2656.mrna |
| Orig protein id | gnl|cribi|Naga_100149g5.2656 |
| Gbkey | mRNA |
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| CM002460.1 | supercontig | CM002460.1:140146..142946 - |
Analyses
This mRNA is derived from or has results from the following analyses
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
mRNA sequence >rna2878 ID=rna2878|Name=rna2878|organism=Nannochloropsis gaditana|type=mRNA|length=2043bp
GGAGGAGAGAAAGCGGTGATACAGGACTTCACGTTGCAATACAGACGACG
GGAGGGAGTGTCAGACCGTCTACGAGTAGCTCGACGCGAAAATGATATTC
ACTCGCCTCAACATGTGGCGCATATGAGCTCATGACAATGGAATACATCA
CATTCGCCATGGTAGGAGCACATTTGGTCGGCATCCCCCATTTTCTTGCT
TCGGAAAATTTCCATTTTTTTATGCACGCTGTCTGCTCTTGGCTTCTTGT
TCGTTGACAGGGACAACGAGCTCGTAATCAACACCACGCTTTTCAACTCC
CAGGTAGCCGCTTGTTTGAGGATAAAACCCACTTATGTGATGTGCCACAG
ATGTACAACGACAGAACATGACATAGTCTGGATGTTGTCTGTGATTCCCT
CCTTTTGACCTGGTGTTCTTGCTAGCTACGGGTTGGGGGAAAACCTCCTC
TGGAGTCCAAAGCATGATGTCACATTCCCCCTTTTTATTTTACGTCCTCA
ATGATTTGGAGGGGGGAGGCGTCGACGACATTTTGCAACATGGTTTTAAT
CCTTTTCAGAGGAACTTATAGTTTATGTCCTGCATTCGAATGTTTTTCTA
CTTCACTTTCAAAACAGACGGGCGCCGCCGGCCTTATAATTCATTGACCC
GCAGGATGGTTTCAATTAAGTTAAAAACCATACAAGGCCGCGAATTTTCG
GTTGACGGTGTCGAGCTTTCCCAAACGATCAATGACCTGAAAGCTGCTGT
GGAGGCATCCCCTCCTTCGGGAGAGGTCTTACCCGCGGATCGACTGAAGC
TGATCCATCAAGGCAAAGAACTGACCCAGGGTGATTCCACCCTCTCTGCG
TACAACATCGCGGACAATGACCTGGTCATCGTAATGCTCACCCGCCACAA
GCCGCCAGCTCCCTCGCCATCCGCCCCTGCGCCCGCTCCTCCCCCTCCTT
CCCTCCCTCCCTCCCAACCTCCTTCAAATCCGCACGTGGAACAGCTGAAA
GAGATGGGCTTTCCCGAGTCGCAGGTTACGGCGGCCCTCCGGGCAGCGCA
AAACGATGCCGATCTGGCTGTCGAATTTCTTTTCAGTGGGAACATTCCTT
CCTCTCCTGCCCCCTTGTCGGCCTTGGAATCCGCGGTAGGAGTGGAGAGG
GATGCAGAAAGGGCTGCGGAGGAAGAGGCAGGAGCCGGGACGAATGCGAC
GGTGGTGGCGCAGTTATTAAGTCACCCGGAGATGGAACGTATTCGCCGCG
TTGTCAGGGAAAACCCGAGCGGGATGGAGAGCATGGTTGCTGCCCTGGCC
GTCACCCACCCGGACCTCGTCCGTATCATTAATGAGGACCCTGCTAGCTT
TTGGGCAGCCTTGGAGGAGAATGAAGAGGGGATGGAGGAAGACGAAGGGG
AAGAGGAGGAGGAGGCGGGTGTGTTGGGAGCTCTGGAGTTGTCGGAAGCA
GATGAGGCTGCCATCGCGCGTTTGATGGAGATGGGCTTCGGTAGGGAACA
AGTAGTGGAAGCTTATATCTTGTCCGGGAAGGAAGAAAACGCGGCGGTCA
ATTTGCTCTTGGGAGGATGAAGTTTTCAGGGGGGCAGGGTAGAGTGGGAG
GGAGCAAGGGGAGGGTCGGGGGGGGGGCATGGTGGGCGATGAACCCAACA
CGGGGGAGGCAAGATCAAGGAGGTCGATGATGCAAAGAAGATTGTGCGAT
GCAAGTACATTAAAACTTGTTGTGATACAATATTTTATCCACACGTGCGT
GGCACATCCAATGTGTGGGAGCATCTTTAAAAATGCGTCGAGGAGTGTTC
GGAACCGGTATTGATGTTCTCTGGGACAAGAACCCGTACTTTCAACAGAG
CACAATTTTTTGCTTGAATGTGAGGTCATTGAATGTATCGATCTGAGGTT
GTTGCAAGGAAAGTCCCCAATGATTGAAGGCGGGAATGTAGCAATATTGA
GCGTAGCTTTAGAGCTGAGATATATTTAGTTTGGGGTTGACTGATAAAAT
CCTCCATTGGAAAAATGGTAGAAATTTTAGCCGGGAGCAGCTC back to topprotein sequence of rna2878 >rna2878-protein ID=rna2878-protein|Name=rna2878|organism=Nannochloropsis gaditana|type=polypeptide|length=624bp
MRRSVLSLGAALTTLLLFASCVEGDIEYGQLPDSSTPQDPLGLRDDPSLN
FGETYSAVGSRVNKGCNVKNAENGHLYGCGMSVETPIGINMGVGADVMND
GTVKFGIGGGDGGGQGFGMGCEVGADGSLRCGKGSSLGGQQGFASAGDVT
TQAVGNQAATLAHLASLEGQHVHVDEEYKEGTLHLALDSQDFHAVIMGQT
IYVPPDLAAEQEEYYLRLREAERSPRSGQKGKGPTVAGTERSLQAVETPA
GLAVIVPEGQEVPDKDKPVVVERAQPATPTSPSAATVANVAATAGTNTDL
NKPNPLQNSPAILNPSGPDLSAPPRLHIFQGKVPGNVEQVEGTMLLPPVL
NAQLWRVAGAEVMVNCSQALLTYVGNPFPVSYGNDGIGRVTPMVSGIKEA
DQALLNTLYFFDVTLTLAAPENLPSIPLGGEIRVNFQGQETVGDSIMAEV
QDEAVARTYPGAGEKFVFDTSFVKVGALDDLTPVQQMRYVHLDLRQAVPV
MAVDVRPKLFVHNVGMVIRRVPPTPAEVASDADYMGLQRYPAVNKLIATE
GESRRGANAPAYFLPRSTVHGKETMQVVESKKREAEMAAQEVASVGSPLS
SRLSSSSPASSETGMGTRRGLRRA back to topmRNA from alignment at CM002460.1:140146..142946- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >rna2878 ID=rna2878|Name=rna2878|organism=Nannochloropsis gaditana|type=mRNA|length=2801bp|location=Sequence derived from alignment at CM002460.1:140146..142946- (Nannochloropsis gaditana)
CATCATGCTTGTGGAGATAGTCCACGTAAGCATTTTCTACGGGTTTTGGC
TTCAAATCACAATTATGACAACTACTGACACAATGTTTTCTTTTACATCA
AGGCTGAGAAAGCAATTAAAACTCGAGCGAGTAATTTCTGCCCTGCACCA
AGCACCACGTCGCGGTGAACCCTTCCTTGGCTGAGTAGATACTCCCGGCA
ATTCACGATTTTGGTAAAATGCGTCGTTCAGTGCTCTCCTTAGGTGCAGC
ATTGACTACACTTCTTCTATTCGCATCGTGTGTGGAAGGTAAGAGTATAC
TTTTTCAGGTGGACATTGTTGGTGCTGATGCTTTCTCGTCGACGTGTATC
AACTCTTCTATAATTCCCGTTACCCAATTTCTGTCACGTGTTTGAAAGTT
TTGATCAGCCAACTGAAGCAAATACAAAATAAGAGCGATTATAATCAATT
ATCACGTCCAGTTGCGGCCGATGAGTGGTGCCTTAACTCGACCTGAATTA
TAAGCCCCCCTTCCATGTAAATACATTAGACCTCCATCTTCATTGTTTCA
ATTAGATGTCGCTTTTTAAAAATCTTCTCTATAAACACAAGCAATGCTCT
GCTTTAGAGCAGCAAAATATAGACTGACAACCTCTATCGACTCATCTGCC
ACAGGGGACATCGAGTATGGCCAACTACCCGACTCCTCCACACCTCAGGA
CCCGCTTGGCCTACGCGATGACCCTTCTCTTAATTTTGGAGAGACATACA
GCGCGGTAGGGAGTCGGGTCAACAAAGGCTGTAACGTGAAAAATGCCGAA
AATGGCCATCTGTACGGATGCGGCATGTCAGTGGAGACACCCATTGGGAT
AAACATGGGGGTTGGCGCTGACGTCATGAATGATGGGACGGTCAAATTCG
GCATCGGAGGTGGAGATGGAGGCGGGCAGGGATTTGGCATGGGTTGCGAG
GTCGGTGCCGATGGCTCGCTGCGCTGCGGGAAAGGCAGCAGCTTGGGCGG
ACAGCAAGGGTTTGCCTCTGCGGGGGATGTGACCACACAGGCCGTGGGTA
ACCAGGCTGCGACGCTCGCGCATTTAGCGTCTTTGGAAGGGCAGCATGTG
CACGTGGATGAGGAATACAAGGAAGGGACCCTCCACCTAGCCTTGGACTC
TCAGGATTTTCATGCCGTTATCATGGGCCAGACTATTTACGTTCCCCCCG
ACCTGGCGGCTGAGCAAGAAGAGTACTACCTGCGCCTGAGGGAGGCTGAA
CGCAGCCCGAGAAGCGGACAGAAAGGAAAAGGACCGACGGTCGCAGGGAC
GGAAAGGAGCTTGCAAGCTGTTGAGACCCCCGCGGGCTTAGCTGTCATCG
TTCCAGAAGGTCAAGAGGTTCCCGACAAAGACAAACCGGTGGTGGTAGAA
CGGGCTCAACCCGCAACTCCCACCTCTCCATCTGCTGCCACCGTTGCCAA
CGTGGCTGCTACTGCAGGCACTAACACCGACCTGAACAAACCGAATCCAC
TTCAGAACTCTCCGGCCATTCTGAACCCGTCGGGGCCGGATTTGTCTGCT
CCTCCCCGCCTGCATATTTTCCAAGGGAAAGTGCCCGGTAACGTGGAACA
AGTGGAAGGCACCATGCTCCTGCCCCCTGTCCTAAATGCACAGCTCTGGC
GCGTCGCTGGCGCGGAAGTAATGGTGAACTGCTCCCAGGCCCTGTTGACG
TACGTGGGGAACCCATTTCCGGTAAGCTATGGAAATGATGGGATTGGAAG
GGTCACCCCCATGGTATCTGGCATCAAAGAAGCAGACCAAGCGTTGTTGA
ACACGCTCTACTTTTTTGATGTGACGTTGACGCTTGCCGCCCCCGAGAAT
TTGCCGAGCATTCCCTTGGGTGGAGAAATCCGGGTGAACTTTCAGGGGCA
GGAGACGGTGGGAGACTCGATCATGGCAGAAGTGCAAGACGAAGCAGTGG
CACGGACATACCCCGGGGCCGGGGAGAAATTCGTGTTCGACACCTCTTTT
GTGAAGGTGGGTGCCTTGGACGATTTGACACCGGTGCAGCAAATGCGATA
CGTGCATTTGGATTTGCGACAGGCCGTCCCCGTCATGGCTGTCGATGTCC
GGCCCAAGCTCTTTGTACATAACGTAGGCATGGTCATTCGACGGGTGCCG
CCAACTCCGGCAGAGGTGGCCAGCGACGCGGACTACATGGGTTTGCAACG
TTATCCTGCTGTGAACAAATTAATTGCGACGGAGGGAGAGTCTCGTAGGG
GTGCTAACGCACCAGCATACTTCCTCCCTCGCTCGACCGTGCATGGGAAA
GAGACGATGCAGGTGGTGGAAAGCAAGAAAAGGGAGGCTGAGATGGCAGC
TCAAGAGGTTGCATCCGTCGGTTCCCCACTTTCCTCCCGGCTATCATCGT
CTTCGCCGGCAAGTTCAGAGACGGGTATGGGGACTCGGCGAGGCTTGCGA
CGTGCTTGATATTTTCTCGATCGGATTGCGTGAGGACTTCAATTATTGGG
AGATCTAGGGACGAATTTGATCCAGCTTTCAGCGATTAAATGCAAATGTA
TTTTGTACATCTGGACCAGGCAAGAATGTGGATGTGGGGAAAGAGAGGAA
TAAGCTGCTAAGTTACGGGGTAGAGAAGCGGGGTGCCGCTTTCAAAAAAG
GTCCCTCTCTCTATTTGATTGTGTCTTTGAGATCAAATAAGCGTAATAAT
TGTTGTGTTTGCGAAATTGTTCTTCTTTTAGTTTTGCGTAGTTTCGTAAG
GTCAGTTTGCGAGGAAAAGTCCCACATTGCTAAGTTGCTACTTTACTGGC
C back to topCoding sequence (CDS) from alignment at CM002460.1:140146..142946- >rna2878 ID=rna2878|Name=rna2878|organism=Nannochloropsis gaditana|type=CDS|length=3750bp|location=Sequence derived from alignment at CM002460.1:140146..142946- (Nannochloropsis gaditana)
GGGACATCGAGTATGGCCAACTACCCGACTCCTCCACACCTCAGGACCCG
CTTGGCCTACGCGATGACCCTTCTCTTAATTTTGGAGAGACATACAGCGC
GGTAGGGAGTCGGGTCAACAAAGGCTGTAACGTGAAAAATGCCGAAAATG
GCCATCTGTACGGATGCGGCATGTCAGTGGAGACACCCATTGGGATAAAC
ATGGGGGTTGGCGCTGACGTCATGAATGATGGGACGGTCAAATTCGGCAT
CGGAGGTGGAGATGGAGGCGGGCAGGGATTTGGCATGGGTTGCGAGGTCG
GTGCCGATGGCTCGCTGCGCTGCGGGAAAGGCAGCAGCTTGGGCGGACAG
CAAGGGTTTGCCTCTGCGGGGGATGTGACCACACAGGCCGTGGGTAACCA
GGCTGCGACGCTCGCGCATTTAGCGTCTTTGGAAGGGCAGCATGTGCACG
TGGATGAGGAATACAAGGAAGGGACCCTCCACCTAGCCTTGGACTCTCAG
GATTTTCATGCCGTTATCATGGGCCAGACTATTTACGTTCCCCCCGACCT
GGCGGCTGAGCAAGAAGAGTACTACCTGCGCCTGAGGGAGGCTGAACGCA
GCCCGAGAAGCGGACAGAAAGGAAAAGGACCGACGGTCGCAGGGACGGAA
AGGAGCTTGCAAGCTGTTGAGACCCCCGCGGGCTTAGCTGTCATCGTTCC
AGAAGGTCAAGAGGTTCCCGACAAAGACAAACCGGTGGTGGTAGAACGGG
CTCAACCCGCAACTCCCACCTCTCCATCTGCTGCCACCGTTGCCAACGTG
GCTGCTACTGCAGGCACTAACACCGACCTGAACAAACCGAATCCACTTCA
GAACTCTCCGGCCATTCTGAACCCGTCGGGGCCGGATTTGTCTGCTCCTC
CCCGCCTGCATATTTTCCAAGGGAAAGTGCCCGGTAACGTGGAACAAGTG
GAAGGCACCATGCTCCTGCCCCCTGTCCTAAATGCACAGCTCTGGCGCGT
CGCTGGCGCGGAAGTAATGGTGAACTGCTCCCAGGCCCTGTTGACGTACG
TGGGGAACCCATTTCCGGTAAGCTATGGAAATGATGGGATTGGAAGGGTC
ACCCCCATGGTATCTGGCATCAAAGAAGCAGACCAAGCGTTGTTGAACAC
GCTCTACTTTTTTGATGTGACGTTGACGCTTGCCGCCCCCGAGAATTTGC
CGAGCATTCCCTTGGGTGGAGAAATCCGGGTGAACTTTCAGGGGCAGGAG
ACGGTGGGAGACTCGATCATGGCAGAAGTGCAAGACGAAGCAGTGGCACG
GACATACCCCGGGGCCGGGGAGAAATTCGTGTTCGACACCTCTTTTGTGA
AGGTGGGTGCCTTGGACGATTTGACACCGGTGCAGCAAATGCGATACGTG
CATTTGGATTTGCGACAGGCCGTCCCCGTCATGGCTGTCGATGTCCGGCC
CAAGCTCTTTGTACATAACGTAGGCATGGTCATTCGACGGGTGCCGCCAA
CTCCGGCAGAGGTGGCCAGCGACGCGGACTACATGGGTTTGCAACGTTAT
CCTGCTGTGAACAAATTAATTGCGACGGAGGGAGAGTCTCGTAGGGGTGC
TAACGCACCAGCATACTTCCTCCCTCGCTCGACCGTGCATGGGAAAGAGA
CGATGCAGGTGGTGGAAAGCAAGAAAAGGGAGGCTGAGATGGCAGCTCAA
GAGGTTGCATCCGTCGGTTCCCCACTTTCCTCCCGGCTATCATCGTCTTC
GCCGGCAAGTTCAGAGACGGGTATGGGGACTCGGCGAGGCTTGCGACGTG
CTTGAATGCGTCGTTCAGTGCTCTCCTTAGGTGCAGCATTGACTACACTT
CTTCTATTCGCATCGTGTGTGGAAGGGGACATCGAGTATGGCCAACTACC
CGACTCCTCCACACCTCAGGACCCGCTTGGCCTACGCGATGACCCTTCTC
TTAATTTTGGAGAGACATACAGCGCGGTAGGGAGTCGGGTCAACAAAGGC
TGTAACGTGAAAAATGCCGAAAATGGCCATCTGTACGGATGCGGCATGTC
AGTGGAGACACCCATTGGGATAAACATGGGGGTTGGCGCTGACGTCATGA
ATGATGGGACGGTCAAATTCGGCATCGGAGGTGGAGATGGAGGCGGGCAG
GGATTTGGCATGGGTTGCGAGGTCGGTGCCGATGGCTCGCTGCGCTGCGG
GAAAGGCAGCAGCTTGGGCGGACAGCAAGGGTTTGCCTCTGCGGGGGATG
TGACCACACAGGCCGTGGGTAACCAGGCTGCGACGCTCGCGCATTTAGCG
TCTTTGGAAGGGCAGCATGTGCACGTGGATGAGGAATACAAGGAAGGGAC
CCTCCACCTAGCCTTGGACTCTCAGGATTTTCATGCCGTTATCATGGGCC
AGACTATTTACGTTCCCCCCGACCTGGCGGCTGAGCAAGAAGAGTACTAC
CTGCGCCTGAGGGAGGCTGAACGCAGCCCGAGAAGCGGACAGAAAGGAAA
AGGACCGACGGTCGCAGGGACGGAAAGGAGCTTGCAAGCTGTTGAGACCC
CCGCGGGCTTAGCTGTCATCGTTCCAGAAGGTCAAGAGGTTCCCGACAAA
GACAAACCGGTGGTGGTAGAACGGGCTCAACCCGCAACTCCCACCTCTCC
ATCTGCTGCCACCGTTGCCAACGTGGCTGCTACTGCAGGCACTAACACCG
ACCTGAACAAACCGAATCCACTTCAGAACTCTCCGGCCATTCTGAACCCG
TCGGGGCCGGATTTGTCTGCTCCTCCCCGCCTGCATATTTTCCAAGGGAA
AGTGCCCGGTAACGTGGAACAAGTGGAAGGCACCATGCTCCTGCCCCCTG
TCCTAAATGCACAGCTCTGGCGCGTCGCTGGCGCGGAAGTAATGGTGAAC
TGCTCCCAGGCCCTGTTGACGTACGTGGGGAACCCATTTCCGGTAAGCTA
TGGAAATGATGGGATTGGAAGGGTCACCCCCATGGTATCTGGCATCAAAG
AAGCAGACCAAGCGTTGTTGAACACGCTCTACTTTTTTGATGTGACGTTG
ACGCTTGCCGCCCCCGAGAATTTGCCGAGCATTCCCTTGGGTGGAGAAAT
CCGGGTGAACTTTCAGGGGCAGGAGACGGTGGGAGACTCGATCATGGCAG
AAGTGCAAGACGAAGCAGTGGCACGGACATACCCCGGGGCCGGGGAGAAA
TTCGTGTTCGACACCTCTTTTGTGAAGGTGGGTGCCTTGGACGATTTGAC
ACCGGTGCAGCAAATGCGATACGTGCATTTGGATTTGCGACAGGCCGTCC
CCGTCATGGCTGTCGATGTCCGGCCCAAGCTCTTTGTACATAACGTAGGC
ATGGTCATTCGACGGGTGCCGCCAACTCCGGCAGAGGTGGCCAGCGACGC
GGACTACATGGGTTTGCAACGTTATCCTGCTGTGAACAAATTAATTGCGA
CGGAGGGAGAGTCTCGTAGGGGTGCTAACGCACCAGCATACTTCCTCCCT
CGCTCGACCGTGCATGGGAAAGAGACGATGCAGGTGGTGGAAAGCAAGAA
AAGGGAGGCTGAGATGGCAGCTCAAGAGGTTGCATCCGTCGGTTCCCCAC
TTTCCTCCCGGCTATCATCGTCTTCGCCGGCAAGTTCAGAGACGGGTATG
GGGACTCGGCGAGGCTTGCGACGTGCTTGAATGCGTCGTTCAGTGCTCTC
CTTAGGTGCAGCATTGACTACACTTCTTCTATTCGCATCGTGTGTGGAAG back to top
|