EWM27807.1, cds2870 (CDS) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	EWM27807.1
Unique Name	cds2870
Type	CDS
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Alignment location	CM002460.1:142659..142728 -
Alignment location	CM002460.1:140488..142292 -

Link to JBrowse

Properties


Property Name	Value
Protein id	EWM27807.1
Product	hypothetical protein
Orig transcript id	gnl\|cribi\|Naga_100149g5.2656.mrna
Gbkey	CDS

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:142659..142728 -
CM002460.1	supercontig	CM002460.1:140488..142292 -

Analyses

This CDS is derived from or has results from the following analyses


Analysis Name	Date Performed
BLAST analysis for N. gaditana B-31	2020-04-07
InterPro analysis for N. gaditana B-31	2020-04-06
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

[Close]

BLAST of EWM27807.1 vs. NCBI_GenBank
Match: gi|585110108|gb|EWM27807.1| (hypothetical protein Naga_100149g5 [Nannochloropsis gaditana])

HSP 1 Score: 1269.22 bits (3283), Expect = 0.000e+0
Identity = 624/624 (100.00%), Postives = 624/624 (100.00%), Query Frame = 0

Query:    1 MRRSVLSLGAALTTLLLFASCVEGDIEYGQLPDSSTPQDPLGLRDDPSLNFGETYSAVGSRVNKGCNVKNAENGHLYGCGMSVETPIGINMGVGADVMNDGTVKFGIGGGDGGGQGFGMGCEVGADGSLRCGKGSSLGGQQGFASAGDVTTQAVGNQAATLAHLASLEGQHVHVDEEYKEGTLHLALDSQDFHAVIMGQTIYVPPDLAAEQEEYYLRLREAERSPRSGQKGKGPTVAGTERSLQAVETPAGLAVIVPEGQEVPDKDKPVVVERAQPATPTSPSAATVANVAATAGTNTDLNKPNPLQNSPAILNPSGPDLSAPPRLHIFQGKVPGNVEQVEGTMLLPPVLNAQLWRVAGAEVMVNCSQALLTYVGNPFPVSYGNDGIGRVTPMVSGIKEADQALLNTLYFFDVTLTLAAPENLPSIPLGGEIRVNFQGQETVGDSIMAEVQDEAVARTYPGAGEKFVFDTSFVKVGALDDLTPVQQMRYVHLDLRQAVPVMAVDVRPKLFVHNVGMVIRRVPPTPAEVASDADYMGLQRYPAVNKLIATEGESRRGANAPAYFLPRSTVHGKETMQVVESKKREAEMAAQEVASVGSPLSSRLSSSSPASSETGMGTRRGLRRA 624
            MRRSVLSLGAALTTLLLFASCVEGDIEYGQLPDSSTPQDPLGLRDDPSLNFGETYSAVGSRVNKGCNVKNAENGHLYGCGMSVETPIGINMGVGADVMNDGTVKFGIGGGDGGGQGFGMGCEVGADGSLRCGKGSSLGGQQGFASAGDVTTQAVGNQAATLAHLASLEGQHVHVDEEYKEGTLHLALDSQDFHAVIMGQTIYVPPDLAAEQEEYYLRLREAERSPRSGQKGKGPTVAGTERSLQAVETPAGLAVIVPEGQEVPDKDKPVVVERAQPATPTSPSAATVANVAATAGTNTDLNKPNPLQNSPAILNPSGPDLSAPPRLHIFQGKVPGNVEQVEGTMLLPPVLNAQLWRVAGAEVMVNCSQALLTYVGNPFPVSYGNDGIGRVTPMVSGIKEADQALLNTLYFFDVTLTLAAPENLPSIPLGGEIRVNFQGQETVGDSIMAEVQDEAVARTYPGAGEKFVFDTSFVKVGALDDLTPVQQMRYVHLDLRQAVPVMAVDVRPKLFVHNVGMVIRRVPPTPAEVASDADYMGLQRYPAVNKLIATEGESRRGANAPAYFLPRSTVHGKETMQVVESKKREAEMAAQEVASVGSPLSSRLSSSSPASSETGMGTRRGLRRA
Sbjct:    1 MRRSVLSLGAALTTLLLFASCVEGDIEYGQLPDSSTPQDPLGLRDDPSLNFGETYSAVGSRVNKGCNVKNAENGHLYGCGMSVETPIGINMGVGADVMNDGTVKFGIGGGDGGGQGFGMGCEVGADGSLRCGKGSSLGGQQGFASAGDVTTQAVGNQAATLAHLASLEGQHVHVDEEYKEGTLHLALDSQDFHAVIMGQTIYVPPDLAAEQEEYYLRLREAERSPRSGQKGKGPTVAGTERSLQAVETPAGLAVIVPEGQEVPDKDKPVVVERAQPATPTSPSAATVANVAATAGTNTDLNKPNPLQNSPAILNPSGPDLSAPPRLHIFQGKVPGNVEQVEGTMLLPPVLNAQLWRVAGAEVMVNCSQALLTYVGNPFPVSYGNDGIGRVTPMVSGIKEADQALLNTLYFFDVTLTLAAPENLPSIPLGGEIRVNFQGQETVGDSIMAEVQDEAVARTYPGAGEKFVFDTSFVKVGALDDLTPVQQMRYVHLDLRQAVPVMAVDVRPKLFVHNVGMVIRRVPPTPAEVASDADYMGLQRYPAVNKLIATEGESRRGANAPAYFLPRSTVHGKETMQVVESKKREAEMAAQEVASVGSPLSSRLSSSSPASSETGMGTRRGLRRA 624

The following BLAST results are available for this feature:

BLAST of EWM27807.1 vs. NCBI_GenBank

BLAST of EWM27807.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 1


Match Name	E-value	Identity	Description
gi\|585110108\|gb\|EWM27807.1\|	0.000e+0	100.00	hypothetical protein Naga_100149g5 [Nannochloropsi...	[more]

Relationships

This CDS is a part of the following mRNA feature(s):


Feature Name	Unique Name	Species	Type
rna2878	rna2878	Nannochloropsis gaditana (N. gaditana B-31)	mRNA

Sequences

Synonyms

Publications