rna2876, rna2876 (mRNA) Nannochloropsis gaditana

Overview
Namerna2876
Unique Namerna2876
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length1217
Alignment locationCM002460.1:133984..135507 -

Link to JBrowse

Properties
Property NameValue
Producttransthyretin family protein
Orig transcript idgnl|cribi|Naga_100149g8.2649.mrna
Orig protein idgnl|cribi|Naga_100149g8.2649
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:133984..135507 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100149g8gene2753Nannochloropsis gaditana (N. gaditana B-31)gene


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27800.1cds2868Nannochloropsis gaditana (N. gaditana B-31)CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2876rna2876-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2876 ID=rna2876|Name=rna2876|organism=Nannochloropsis gaditana|type=mRNA|length=1217bp
ACATGTTCCAAAAGAAAGCATTTTTTTTCCATTAATTTGTCATGGATTAG
ACGCACGATTGATTCTTTTTTTCGTCACACGATTGCGGCTTGTCGATACC
TGACCCTTTCGAAATGCCAAACTTGCTTAAGACTTCTTTCGACCTCCCTC
CTGATTTGTCCAAACCCGTCGCCCGGGCCTTGTGCCGTGTGTAACTTGAC
GGGACATATGATGTTTAATCAATATATATATTTGCTGTCATACCGACCAT
TTCTACACCTCTGCGTCTTTACAAGAAAATAAAGCTCGTACGCGAGGCGA
AGTGGTCAACATTACTCGGTACTCATTGTCCTTTTTCCTAAAATTTAGTC
CCGATACATCCCGTACCAGTGGTAGCGGCCCAATGAAGTGCATTACAACC
GCACTAATCGTACTGCCATGTATCGTCAGTGGCTTTCTTGTTCCAGCTGT
ACCCAGCATCACCTTTTCGGATAGTCGTGCACCCACGCGCCTGTACGTAG
GCTCAAATGCCAAAATTGATGTCCCGCCCGACCTGGAAGGAAGACTCGAT
CCCAAGCGGCACTGGGATGTCGTGATGAGTCTGAACGGCGAAACGAAGAC
AGTTTCCGTCAGTGAAGGCACCTCGCTTCTAGATGCCGCGGAAGAAGCCT
TCGGCGACCCCCCTTGCATGTGTCGAAATGGGGTGTGTACAACCTGCGCT
GCGGAAGTAACTCGAGGCGGACATGGGTCGTGGGTGGCGGCCATCGAATC
CCTTTCACCAGAACAGCAAGAGAGCGGCTTTATCCTGTCTTGCCAAACAT
ATCCGTGTGGCCCGGGACTGGAAGTTCGCCTCAACGCCCAGGAGGAAGTG
TACGAGAGCCAGTACGCCAAGTATGAGAAGAAAGCTCACGAGGAATTGGA
GAAAAAGAAAGGATTCAATATCTTTGCATGATAGGGCGGGCACGTCGCTC
AACGACCGAGAAACCCAGGCGTCTTTCGCATGCGAAAGACTTGGCAATAC
ATCTGAGAATGAAAACAAGGAGGAAAAGACAAGGTGTGCAATTCTTTCGG
GGGGGGGAAAGAAGACACGAGCCAGACCGTCACAGATTTCGCTGACATGA
AACATCCTCCAAGAGGGCGGGAAGCCCCTTCAGGAAAAAAATATCGAAGG
GAAAAAAATAAAATTTTTGCAAACTCCCCTCAGAGTTCGATTAAGAGGTG
CCAAATGATGTCTTTGT
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protein sequence of rna2876

>rna2876-protein ID=rna2876-protein|Name=rna2876|organism=Nannochloropsis gaditana|type=polypeptide|length=154bp
MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKP
AQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPG
IYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYST
YRGS
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mRNA from alignment at CM002460.1:133984..135507-

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2876 ID=rna2876|Name=rna2876|organism=Nannochloropsis gaditana|type=mRNA|length=1524bp|location=Sequence derived from alignment at CM002460.1:133984..135507- (Nannochloropsis gaditana)
CCCAACCCGTAGCTAGCAAGAACACCAGGTCAAAAGGAGGGAATCACAGA
CAACATCCAGACTATGTCATGTTCTGTCGTTGTACATCTGTGGCACATCA
CATAAGTGGGTTTTATCCTCAAACAAGCGGCTACCTGGGAGTTGAAAAGC
GTGGTGTTGATTACGAGCTCGTTGTCCCTGTCAACGAACAAGAAGCCAAG
AGCAGACAGCGTGCATAAAAAAATGGAAATTTTCCGAAGCAAGAAAATGG
GGGATGCCGACCAAATGTGCTCCTACCATGGCGAATGTGATGTATTCCAT
TGTCATGAGCTCATATGCGCCACATGTTGAGGCGAGTGAATATCATTTTC
GCGTCGAGCTACTCGTAGACGGTCTGACACTCCCTCCCGTCGTCTGTATT
GCAACGTGAAGTCCTGTATCACCGCTTTCTCTCCTCCCGTATGTGCTTGC
CCCACATGTAACTATAACTTCATGACAATATGGATGTTTGTAATGACCAC
TGGGCTGCGGGAGCATAGCACATACGGGGCAACTCCCGTGGTGGTACGGG
AGGTTGTTGACATTGCGGCGTTGCTGAACGTTTGTTTGTGTCAATTCTGG
CCGCATGTCTTGGAGAAGGAAAGTGCATTTGTTGGAAATTACATGGAAAT
TTGGACAGACAGTGGGCTTTTGGTGTGTTTTTCTGTCTTTCGCATCTTTA
TTTCTGTAGTCAAGGCTGCATAAGGCGGTAATAAACAAGCCCTCACCTCT
GATACCAGCTATGTAACCCGATCGCTCCATGCATCGACAGACTGACATTG
TATTCATATAGGCCAAAATCTTCGAACAGTCCTCTTCGATTGTTTTTCCT
TCCACCTGCAGCATTTGTTCACACGTGGCATTGGCTACCATTCTTTCGAC
AGGCTACGGACGCAGTGTATGCCTGCTTCTTCGACCACGCCTGCGACGTC
ACGTCTCACCGCTCTAGCTGCTCATCTCTCCTCTGTTTCTGTCACCAGCA
ACCCTAAAATGAGCCCAAAACGCAGTCCAATTACTTCCCATGTGCTTGAC
ACCACACTGGGAAAGCCAGCGCAGGGAATGCCTCTTCGTCTGGAGCAGCA
AGGAGAGCATGGCATAGGTAATGGAAATGCTACATGGACCTTGCTTGGCG
AAGGGCTGACGAATGCAGATGGAAGGGTCGAAGATTTGCTACCATCTTCC
CACACTTTGTCACCGGGCATCTATAAAATCACATTTGACGTGGCGGTTTA
CTTTCGCGCCATCAACACCAAGAGTTTCTACCCAAGTGTAACAATCGAAT
TTGAAGTGGAACGTCCCGAGGAACATTACCATGTGCCGTTGTTGATTAAT
CCTTTTGCTTACTCCACCTACAGAGGAAGTTGATGCGATGAACAGGGACA
GGGGGTAGTAGAGGGTGCTGCAGAGAGGTTGATAAGACAGTGTGGTGAAG
CGTATTAGGGAGCCATGTCTGTATTATAGCATAAAAATCATGACAAAGAC
ATCATTTGGCACCTCTTAATCGAA
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Coding sequence (CDS) from alignment at CM002460.1:133984..135507-

>rna2876 ID=rna2876|Name=rna2876|organism=Nannochloropsis gaditana|type=CDS|length=465bp|location=Sequence derived from alignment at CM002460.1:133984..135507- (Nannochloropsis gaditana)
ATGCCTGCTTCTTCGACCACGCCTGCGACGTCACGTCTCACCGCTCTAGC
TGCTCATCTCTCCTCTGTTTCTGTCACCAGCAACCCTAAAATGAGCCCAA
AACGCAGTCCAATTACTTCCCATGTGCTTGACACCACACTGGGAAAGCCA
GCGCAGGGAATGCCTCTTCGTCTGGAGCAGCAAGGAGAGCATGGCATAGG
TAATGGAAATGCTACATGGACCTTGCTTGGCGAAGGGCTGACGAATGCAG
ATGGAAGGGTCGAAGATTTGCTACCATCTTCCCACACTTTGTCACCGGGC
ATCTATAAAATCACATTTGACGTGGCGGTTTACTTTCGCGCCATCAACAC
CAAGAGTTTCTACCCAAGTGTAACAATCGAATTTGAAGTGGAACGTCCCG
AGGAACATTACCATGTGCCGTTGTTGATTAATCCTTTTGCTTACTCCACC
TACAGAGGAAGTTGA
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Synonyms
Publications