EWM27800.1, cds2868 (CDS) Nannochloropsis gaditana

Overview
NameEWM27800.1
Unique Namecds2868
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:134125..134589 -

Link to JBrowse

Properties
Property NameValue
Protein idEWM27800.1
Producttransthyretin family protein
Orig transcript idgnl|cribi|Naga_100149g8.2649.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:134125..134589 -
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0016787hydrolase activity
GO:0033971hydroxyisourate hydrolase activity
Vocabulary: Biological Process
TermDefinition
GO:0006139nucleobase-containing compound metabolic process
GO:0006144purine nucleobase metabolic process
Vocabulary: INTERPRO
TermDefinition
IPR014306Hydroxyisourate_hydrolase
IPR023416Transthyretin/HIU_hydrolase_SF
IPR000895Transthyretin/HIU_hydrolase
Homology
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|553177550|ref|XP_005852475.1| (5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526] >gi|553190698|ref|XP_005855242.1| 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526] >gi|422293818|gb|EKU21118.1| 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526] >gi|422296058|gb|EKU23357.1| 5-hydroxyisourate hydrolase, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 315.849 bits (808), Expect = 4.499e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS
Sbjct:    7 MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 160          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|585110101|gb|EWM27800.1| (transthyretin family protein [Nannochloropsis gaditana])

HSP 1 Score: 315.464 bits (807), Expect = 6.536e-109
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0
Query:    1 MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS
Sbjct:    1 MPASSTTPATSRLTALAAHLSSVSVTSNPKMSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|494030669|ref|WP_006972808.1| (hydroxyisourate hydrolase [Plesiocystis pacifica] >gi|149818610|gb|EDM78056.1| transthyretin family protein [Plesiocystis pacifica SIR-1])

HSP 1 Score: 141.739 bits (356), Expect = 7.066e-41
Identity = 69/120 (57.50%), Postives = 87/120 (72.50%), Query Frame = 0
Query:   35 RSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            RSPIT+H+LDT LG+PA G+ L L+++         A WT LGEG+TN DGRV DLL +  +L  G+Y+I F+VA YF     +SFYPSV++EFEV   +EHYHVPLL+NPF YSTYRGS
Sbjct:    3 RSPITTHILDTALGRPAAGVTLTLDRRD-------GAAWTRLGEGVTNDDGRVTDLL-APGSLEAGVYRIEFEVAAYFARTARESFYPSVSVEFEVRATDEHYHVPLLLNPFGYSTYRGS 114          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|1124671823|ref|WP_074950822.1| (hydroxyisourate hydrolase [Myxococcus fulvus] >gi|1095413827|emb|SET52942.1| 5-hydroxyisourate hydrolase [Myxococcus fulvus])

HSP 1 Score: 140.584 bits (353), Expect = 2.623e-40
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   36 SPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            S +++HVLDT  G+PA G+P+ LE QG HG       W  L  G+TN DGRV D LP+   +  G+Y+++FD   YFR++  K FYPSV++ FE+  P+EHYHVPLL++PF YSTYRGS
Sbjct:    2 STLSTHVLDTHRGRPASGVPITLEAQGAHG------DWKELARGVTNDDGRVRDFLPAGARVETGVYRMSFDTGAYFRSLGVKGFYPSVSVVFELAAPDEHYHVPLLLSPFGYSTYRGS 114          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|819035628|ref|WP_046715761.1| (hydroxyisourate hydrolase [Myxococcus fulvus] >gi|817714135|gb|AKF83336.1| 5-hydroxyisourate hydrolase [Myxococcus fulvus 124B02])

HSP 1 Score: 139.428 bits (350), Expect = 5.516e-40
Identity = 62/119 (52.10%), Postives = 83/119 (69.75%), Query Frame = 0
Query:   36 SPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            S +++HVLDT  G+PA G+P+ LE QG HG       W  L  G+TN DGRV D LP+   +  G+Y+++FD   YFR++  K FYPSV++ FE+  P+EHYHVPLL++PF YSTYRGS
Sbjct:    2 STLSTHVLDTHRGRPASGVPITLELQGAHG------DWKELARGVTNDDGRVRDFLPAGARVETGVYRMSFDTGAYFRSLGVKGFYPSVSVVFELAAPDEHYHVPLLLSPFGYSTYRGS 114          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|488716592|ref|WP_002640468.1| (hydroxyisourate hydrolase [Myxococcus hansupus] >gi|891159415|gb|AKQ64100.1| 5-Hydroxyisourate Hydrolase (HIUase) [Myxococcus hansupus])

HSP 1 Score: 139.428 bits (350), Expect = 5.954e-40
Identity = 63/119 (52.94%), Postives = 81/119 (68.07%), Query Frame = 0
Query:   36 SPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            S +++HVLDT  G+PA G+P+ LE QG      G   W  L  G+TN DGRV D LP    +  G+Y++TFD   YFRA+  + FYPSVT+ FE+  P+EHYHVPLL++PF YSTYRGS
Sbjct:    2 STLSTHVLDTNRGRPASGVPITLELQG------GAGEWKELARGVTNDDGRVRDFLPQGSRVETGVYRMTFDTGAYFRALGVRGFYPSVTVLFELTAPDEHYHVPLLLSPFGYSTYRGS 114          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|503704342|ref|WP_013938418.1| (hydroxyisourate hydrolase [Myxococcus fulvus] >gi|337259110|gb|AEI65270.1| transthyretin family protein [Myxococcus fulvus HW-1])

HSP 1 Score: 137.887 bits (346), Expect = 2.750e-39
Identity = 62/119 (52.10%), Postives = 80/119 (67.23%), Query Frame = 0
Query:   36 SPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            S +++HVLDT  G+PA G+P+ LE Q        +  W  L  G+TN DGRV D LP    + PGIY++ FD   YFRA+  + FYPSVT+ FE+  P+EHYHVPLL++PF YSTYRGS
Sbjct:    2 STLSTHVLDTHRGRPASGVPITLELQ------EASGEWKALARGVTNDDGRVRDFLPQGSRVEPGIYRMAFDTGAYFRALGVRGFYPSVTVVFELTAPDEHYHVPLLLSPFGYSTYRGS 114          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|747219334|gb|KIG18857.1| (5-Hydroxyisourate Hydrolase (HIUase) [Enhygromyxa salina])

HSP 1 Score: 136.732 bits (343), Expect = 1.087e-38
Identity = 70/125 (56.00%), Postives = 86/125 (68.80%), Query Frame = 0
Query:   31 MSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINT-KSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            M+  RSPIT+HVLDT LG+PA G+P+ L       +  G  TW LLG+G TNADGRV DLL ++ +LS G+++I FD AVYF  + T + FYP   I F V  P  HYHVPLL+NPF YSTYRGS
Sbjct:    1 MTDLRSPITTHVLDTALGRPAAGVPVTLYSVSGVDLDAGEPTWELLGKGTTNADGRVTDLL-AAGSLSEGVHRIRFDTAVYFEQLETPEFFYPWAEIVFLVSDPSAHYHVPLLLNPFGYSTYRGS 124          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|752368754|gb|KIO26543.1| (hypothetical protein M407DRAFT_243663 [Tulasnella calospora MUT 4182])

HSP 1 Score: 134.035 bits (336), Expect = 8.670e-38
Identity = 62/124 (50.00%), Postives = 87/124 (70.16%), Query Frame = 0
Query:   31 MSPKRSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            M+P RSPIT HVLD  LG+PA  + +RLEQ  E     G + +++L  G+T++DGR  +LL SS  LS G+YK+ F+   YF A NT++FYP V I F +  P +HYH+PLL++P++Y+TYRGS
Sbjct:    1 MAPTRSPITCHVLDAALGRPAANVAVRLEQLQE-----GGSAFSVLANGVTDSDGRCSNLLDSSLRLSTGVYKMIFETGPYFAASNTQTFYPFVEITFNLSDPSQHYHIPLLLSPWSYTTYRGS 119          
BLAST of EWM27800.1 vs. NCBI_GenBank
Match: gi|913455041|ref|WP_050434450.1| (hydroxyisourate hydrolase [Chondromyces crocatus] >gi|908360319|gb|AKT42894.1| hydroxyisourate hydrolase [Chondromyces crocatus])

HSP 1 Score: 130.954 bits (328), Expect = 1.685e-36
Identity = 63/120 (52.50%), Postives = 85/120 (70.83%), Query Frame = 0
Query:   35 RSPITSHVLDTTLGKPAQGMPLRLEQQGEHGIGNGNATWTLLGEGLTNADGRVEDLLPSSHTLSPGIYKITFDVAVYFRAINTKSFYPSVTIEFEVERPEEHYHVPLLINPFAYSTYRGS 154
            +SPIT+H+LDT+ G+PA G+ + LE   + G G      TLLG G+T+ADGR+ DLLP     S G Y++TF  A YF  +  ++FYPSV++ F++  PEEH+HVPLL+NPF YSTYRGS
Sbjct:    3 QSPITTHILDTSRGRPAAGVHVTLEHLNDAGEG------TLLGRGVTDADGRLRDLLPGGVRPSVGTYRLTFATAAYFAELGVEAFYPSVSVVFQLRAPEEHHHVPLLLNPFGYSTYRGS 116          
The following BLAST results are available for this feature:
BLAST of EWM27800.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|553177550|ref|XP_005852475.1|4.499e-109100.005-hydroxyisourate hydrolase, partial [Nannochlorop... [more]
gi|585110101|gb|EWM27800.1|6.536e-109100.00transthyretin family protein [Nannochloropsis gadi... [more]
gi|494030669|ref|WP_006972808.1|7.066e-4157.50hydroxyisourate hydrolase [Plesiocystis pacifica] ... [more]
gi|1124671823|ref|WP_074950822.1|2.623e-4052.10hydroxyisourate hydrolase [Myxococcus fulvus] >gi|... [more]
gi|819035628|ref|WP_046715761.1|5.516e-4052.10hydroxyisourate hydrolase [Myxococcus fulvus] >gi|... [more]
gi|488716592|ref|WP_002640468.1|5.954e-4052.94hydroxyisourate hydrolase [Myxococcus hansupus] >g... [more]
gi|503704342|ref|WP_013938418.1|2.750e-3952.10hydroxyisourate hydrolase [Myxococcus fulvus] >gi|... [more]
gi|747219334|gb|KIG18857.1|1.087e-3856.005-Hydroxyisourate Hydrolase (HIUase) [Enhygromyxa ... [more]
gi|752368754|gb|KIO26543.1|8.670e-3850.00hypothetical protein M407DRAFT_243663 [Tulasnella ... [more]
gi|913455041|ref|WP_050434450.1|1.685e-3652.50hydroxyisourate hydrolase [Chondromyces crocatus] ... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2876rna2876Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications