rna2875, rna2875 (mRNA) Nannochloropsis gaditana

Overview
Namerna2875
Unique Namerna2875
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length3505
Alignment locationCM002460.1:132649..134015 +

Link to JBrowse

Properties
Property NameValue
Productphenylacetate- oxygenase subunit
Orig transcript idgnl|cribi|Naga_100149g9.2653.mrna
Orig protein idgnl|cribi|Naga_100149g9.2653
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:132649..134015 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100149g9gene2752Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2875rna2875-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27804.1cds2867Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2875 ID=rna2875|Name=rna2875|organism=Nannochloropsis gaditana|type=mRNA|length=3505bp
TTCATTCCCTCTCGTACACAGGTGTTCATGGCGGGGGGACGGGCCAACTT
TGTCCGCTGTACTTTTTGGGACTTCCAGTACTTGGCTCCTCTTACGGACC
ACATTCGTTTCGGTGACAACCTCTTTCTCTTGCGAGGAGAAGCTTATTTC
ACCGGCTGCATCCTGATTTTCAACACCATCATCGGCCTTGATGTGGGCTT
TGGATTAAATATTTCCCAGTGGGGGGGGCTTTTGGTCTTCACCTTTTCTG
TCATCGTGCTTAACAATTTAATCTCTCTAACTGCGGTCGCCGGACAGACA
ATCTTTTGTGCGCGCGGAGTGATGGTCTTCACGGCGGTGGAGCTAATTTT
CAATAGTGCGATAGAAAACTTCAACGGCATGGGAGCAGCCACATTAGGAT
CAGGAGCAAGCATTTGGACCGCCTCAGCGATTCAAGATGTGTATGGGATA
TTGGCAGCCTTTGGGCTCGGATTCGACATCACAAATTGCGCAGGCGTCCT
TGTCAATGTGCACGTGGCTGCCAATCAGTTTATTGCCATCTTGTACGGCG
GTCTTCTGGGGGGCTTTGCTTTCAATGGTGCAGGGGTGTATATCGGGCAC
TTTTCTCCCTTTGTCTCCATGATAGGCTGCGGAGTGGAGGCAGGCGCGGG
TGGTTACGCATACAACGTCGGCATTGCTTCGTTCCATTGGTCTTCTGTGA
CCACGTTCGCCGGAACTTGGAGCGCTTTCATGTATGGGGGAATGATGAGC
GTTCCCGCAGGCTTTTTGGTGTGGATTTACTGTCCCACTGTGGCAGTATC
CGGCGTGGAAAGCTTTTGGGGTCGGGGTGGTACCGTCTTCGTCGGGGCCG
GGGCGGCTGTGATGGGAAGGTCACCTTTGATAGAGATCATGCGCATCATA
AATTTGCATGCAGACTACTGGATTATGGGATCGTGCGAACCATTCGTCGA
GGCATGGGCGGGGGGGCCCATCAAGTTTTACGCGCCATTGCAGGGATGCA
ACGTCAGCGAGGAGGTCCCGGAGTCCGAAGAAGGGGGTTCCTATCACGGC
GAAGAGCGGCGAAACCTTCTGGACCAAGGGTATCGAGGCAAAAGGCAGCT
ATCACAGACCACTCTTCCACCTATGAATGGAAACGGGACAAAGGGGAGTT
ACGGTGACGGCCGTATGGCCGACACGACGGGGAAGGGTGGCAGTGCCGGC
GGACCGACGTCGAGCGACAGAGGGGTGGAGGAGGCAGCGAGAACCTCGAC
GAAGACGTCCTTGATCGCCTTTGGGATGTCCCCGCGCACGAAAAGCAGAC
CGGACAAGATCTTCGACGCCATCCCCCTCAGCGATGATCCGCTTTTGCAG
GTCGTGCTCGGGAAAGCCAGGCTGGAGCTCGTCCAATCCCTGCAGGACGC
CCTCTCCAGCATCCGTTTCGCCTCGGACCCGAAAATCCCCGACCAGACCG
AGCCTCCATTGGACTCCGCCCCATCCCGGCCCTCGTTTCTCCAACCGCGA
CCAGTCACCATGCACGTCGGGGGCCAACGCGAAGGCCTCTGCAGCATCTG
CGGCGTGGACGTGGTGGAGGGAGACGGCGTCGGTGCCTGTGACGTGCACG
AGGAGTGCGAGCCCGGATTCTTGCAGACATTGCAGGACACGGCATTGGGG
AAGGCCTTGGGCGGAGACACGTCCACCTCGCGGCGCTTACCTCTCAAGGC
GGAGGGGAGATCCAGTCCCGCAACGACGACAAGAAGAAGACAGCAGTCCC
CCGATCTCTTTCCTACTGCTTCAGCTCCTTTCCCCCCCTCTTCCTTTTCA
GCTTCTCCCACCTCCTATACCTCTTCCTCCTCCCCCCTCACCCGCCGCGC
CCAGGCGGCGGCCGCCGCGGCCGAATCGGAAGACATTCCATCCACTCCGC
CCAGAGCCGAAGCCCGTTACATCCTGCTGGCCAGGCTGGACGTGACCACT
CGGATCCTCAACGAAACCTTGGACACGAGCCTGTTGAAGGAGGCGCTTTC
CTCCGCCTTGGGCGCGGACGTGGACGACCCTTACCACCAGGTCTTGGGAA
AGGATGCCATGCAAACCGAGGTCTATTCTTTGGCGGTGGACGAAATGTTT
GCTGCCATGTATCCGAAAGAATTGGGCGACGAAGGTGGATACACCTACCG
GGTGCGCCGTCGCCGGCGCCTCTCCCCGACGGAACAGGCAGGGACCGAGG
GTGGGGGGGGAGACGAGGAGGAAGAAGTGGCATTGCAAGTGCAGAAGCAC
CAAATCGTCCTCACCTCCACCTCCCGACCCCAAACACGGCGGGCGCTCCG
GGCGTTGGGGGTCCGAGATCCTGTGGTCGGGGGGTCTCGGCATTTGCGTC
TCGCAACGGGGGAAAAAGACCGACGGGAACGGGCGGCCTTGGCCCGAGAA
ACGGCGCGCAGGCGGTTGCAAGCTGATATGGAAGCGGTCCGAGACGACCC
TGTTGCCTTCGCTGCAGCTGCCACCGCGGCCGCCGAAGCAGAGAAGGCTG
CAGAGGCGGAGGAAGCCGCGTTGGGCTTGGCAATCGCAAAGTATTTGCAG
GAGAAGGGCGGGGCGGTGGAGGCCAGCGTGGAAAATGTGGACGTCCACTT
TGACCAGACCTTGTACATCCCTGCCTACGACCCGGATGTATTTGCAAATG
AAAGCCCCTTCTATCAGGACGTGGGCGCGTATAGCGTGGATCTCTTGGAT
CCTGACCTGCCCCTTTTGCCGCTTGACCACTTGGGGTACAAGAAAAACTA
CCAATTGACTTTGCGGAATTTTCCCGCCTTGGCCCGGGTGCAGCTTGTGG
GCTTGCGCGTCGCGCCGTCGGAGGAAGTCAGGCACCAGGCGGGTGGGCAA
CTGCCTTGGCGTTGTCCTCTGGGCATGGTCAAGACGGACGACCAAGGGTT
TGCGATGCTGCCCGACTTGCGCATTGTGTCGCCCTTGACGTGTCCCCCCG
GTGACTACCAAATCCGGGCCACCGTTCTCTCCGTAGAGGACAAGAGTGAG
GAAGGACACGGGGGAATCCTCTACGGCGTGTCCAACGTCTTTGCCTTGTC
GAGGGAGGGTCGCAAACGGAAGCTGTACGGGACTTCCATGTGGTTGTAGG
CAATTGACCCCTTGCTTGGGGGTCACGGTGGACTGCCATATCTGAGTCCG
GCTGAGCAGGTATCGCGGCTAACGTAGGATTGGCGGGGCCTTCGTTTTTC
ATACAGGAGGCCGTGACTGCCATTCTGGTCGCATGTGGCCATGCCACCCT
CAAATCATCAAATCAACTTTTATTCAATGCAGGTAATCTCTACGCCTTGG
CGACGCACAGATGCCCTCACGTTGCCACCAGGTGGCCCTGATTATGTTGT
AGCTGGAAACATCTTTGTAAGTTTTTTGAAATTGCACTGGTGACTGGGCT
TCAAACCAGGTCAGACCCAAAGTTAGTTGAGATGAGCTCAAGAAATAGCA
TGTAATAGGAGACGTAAGACCTCTCAAAAGCAAAGTACGTGATGCAAACG
GATAA
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protein sequence of rna2875

>rna2875-protein ID=rna2875-protein|Name=rna2875|organism=Nannochloropsis gaditana|type=polypeptide|length=182bp
MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPD
LEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNG
VCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRL
NAQEEVYESQYAKYEKKAHEELEKKKGFNIFA
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mRNA from alignment at CM002460.1:132649..134015+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2875 ID=rna2875|Name=rna2875|organism=Nannochloropsis gaditana|type=mRNA|length=1367bp|location=Sequence derived from alignment at CM002460.1:132649..134015+ (Nannochloropsis gaditana)
ACATGTTCCAAAAGaaagcattttttttccattaATTTGTCATGGATTAG
ACGCACGATTGATTCTTTTTTTCGTCACACGATTGCGGCTTGTCGATACC
TGACCCTTTCGAAATGCCAAACTTGCTTAAGACTTCTttcgacctccctc
ctgatTTGTCCAAACCCGTCGCCCGGGCCTTGTGCCGTGTGTAACTTGAC
GGGACATATGATGTTTAATCAATATATATATTTGCTGTCATACCGACCAT
TTCTACACCTCTGCGTCTTTACAAGAAAATAAAGCTCGTACGCGAGGCGA
AGTGGTCAACATTACTCGGTACTCATTGTCCTTTTTCCTAAAATTTAGTC
CCGATACATCCCGTACCAGTGGTAGCGGCCCAATGAAGTGCATTACAACC
GCACTAATCGTACTGCCATGTATCGTCAGTGGCTTTCTTGTTCCAGCTGT
ACCCAGCATCACCTTTTCGGATAGTCGTGCACCCACGCGCCTGTACGTAG
GCTCAAATGCCAAAATTGATGTCCCGCCCGACCTGGAAGGAAGACTCGAT
CCCAAGCGGTAAGCCCATCTTCTTAATCATTTGCAGCGCTGAACCATTCA
AGCTTTGCCATTTTTTAACTGTAATGCGACTGTGACTGTCTACGTCCGTC
TATGTGCTGATATATGGTCTTATACCTCGATACCCCTGGCTCGTTCCCAT
TATCGCAGGCACTGGGATGTCGTGATGAGTCTGAACGGCGAAACGAAGAC
AGTTTCCGTCAGTGAAGGCACCTCGCTTCTAGATGCCGCGGAAGAAGCCT
TCGGCGACCCCCCTTGCATGTGTCGAAATGGGGTGTGTACAACCTGCGCT
GCGGAAGTAACTCGAGGCGGACATGGGTCGTGGGTGGCGGCCATCGAATC
CCTTTCACCAGAACAGCAAGAGAGCGGCTTTATCCTGTCTTGCCAAACAT
ATCCGTGTGGCCCGGGACTGGAAGTTCGCCTCAACGCCCAGGAGGAAGTG
TACGAGAGCCAGTACGCCAAGTATGAGAAGAAAGCTCACGAGGAattgga
gaaaaagaaaggattCAATATCTTTGCATGATAGGGCGGGCACGTCGCTC
AACGACCGAGAAACCCAGGCGTCTTTCGCATGCGAAAGACTTGGCAATAC
ATCTGAGAATGAAaacaaggaggaaaagacaagGTGTGCAATTCtttcgg
gggggggaaagaagacacGAGCCAGACCGTCACAGATTTCGCTGACATGA
AACATCCtccaagagggcgggaagccccttcaggaaaaaaatatcgaagg
gaaaaaaataaaattttTGCAAACTCCCCTCAGAGTTCGATTAAGAGGTG
CCAAATGATGTCTTTGT
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Coding sequence (CDS) from alignment at CM002460.1:132649..134015+

>rna2875 ID=rna2875|Name=rna2875|organism=Nannochloropsis gaditana|type=CDS|length=1098bp|location=Sequence derived from alignment at CM002460.1:132649..134015+ (Nannochloropsis gaditana)
ATGAAGTGCATTACAACCGCACTAATCGTACTGCCATGTATCGTCAGTGG
CTTTCTTGTTCCAGCTGTACCCAGCATCACCTTTTCGGATAGTCGTGCAC
CCACGCGCCTGTACGTAGGCTCAAATGCCAAAATTGATGTCCCGCCCGAC
CTGGAAGGAAGACTCGATCCCAAGCGGCACTGGGATGTCGTGATGAGTCT
GAACGGCGAAACGAAGACAGTTTCCGTCAGTGAAGGCACCTCGCTTCTAG
ATGCCGCGGAAGAAGCCTTCGGCGACCCCCCTTGCATGTGTCGAAATGGG
GTGTGTACAACCTGCGCTGCGGAAGTAACTCGAGGCGGACATGGGTCGTG
GGTGGCGGCCATCGAATCCCTTTCACCAGAACAGCAAGAGAGCGGCTTTA
TCCTGTCTTGCCAAACATATCCGTGTGGCCCGGGACTGGAAGTTCGCCTC
AACGCCCAGGAGGAAGTGTACGAGAGCCAGTACGCCAAGTATGAGAAGAA
AGCTCACGAGGAattggagaaaaagaaaggattCAATATCTTTGCATGAA
TGAAGTGCATTACAACCGCACTAATCGTACTGCCATGTATCGTCAGTGGC
TTTCTTGTTCCAGCTGTACCCAGCATCACCTTTTCGGATAGTCGTGCACC
CACGCGCCTGTACGTAGGCTCAAATGCCAAAATTGATGTCCCGCCCGACC
TGGAAGGAAGACTCGATCCCAAGCGGCACTGGGATGTCGTGATGAGTCTG
AACGGCGAAACGAAGACAGTTTCCGTCAGTGAAGGCACCTCGCTTCTAGA
TGCCGCGGAAGAAGCCTTCGGCGACCCCCCTTGCATGTGTCGAAATGGGG
TGTGTACAACCTGCGCTGCGGAAGTAACTCGAGGCGGACATGGGTCGTGG
GTGGCGGCCATCGAATCCCTTTCACCAGAACAGCAAGAGAGCGGCTTTAT
CCTGTCTTGCCAAACATATCCGTGTGGCCCGGGACTGGAAGTTCGCCTCA
ACGCCCAGGAGGAAGTGTACGAGAGCCAGTACGCCAAGTATGAGAAGAAA
GCTCACGAGGAattggagaaaaagaaaggattCAATATCTTTGCATGA
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Synonyms
Publications