EWM27804.1, cds2867 (CDS) Nannochloropsis gaditana
Overview
Properties
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Analyses
This CDS is derived from or has results from the following analyses
Annotated Terms
The following terms have been associated with this CDS:
Homology
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|585110105|gb|EWM27804.1| (phenylacetate- oxygenase subunit [Nannochloropsis gaditana]) HSP 1 Score: 378.252 bits (970), Expect = 6.575e-133 Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0 Query: 1 MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182 MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA Sbjct: 1 MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|585110632|gb|EWM28287.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana]) HSP 1 Score: 152.525 bits (384), Expect = 7.416e-44 Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = 0 Query: 7 ALIVLPCIVSGF---LVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182 AL +L C + VP VP + RA VG A VP +LEG+LDP + WDV M+ GETK ++VSE T +L+AAE+ + D PC CRNG+CTTCA V S AI LS EQ ++GF+L+CQT+PCGPGLEV L + VYESQY +YEKKA E+K FN+F Sbjct: 5 ALTLLACFIFSIAQAFVPCVPGL-----RAKNAQRVG--AINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVI-ANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKA--TTEQKSKFNVFG 172
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|873233470|emb|CEM03311.1| (unnamed protein product [Vitrella brassicaformis CCMP3155]) HSP 1 Score: 135.191 bits (339), Expect = 1.483e-37 Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 0 Query: 46 DVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHG-SWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYE 165 +VP DLEGRLDP R W + ++ +G+ +TV V EGTS+L+AAE + DPPC CRNGVCT+CA + G G ++V +SL ++ G++L+CQTY CGPGL+V LN EEVY QY ++E Sbjct: 5 EVPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|298706525|emb|CBJ29495.1| (ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 79.337 bits (194), Expect = 2.221e-15 Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0 Query: 62 DVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKG 177 DV +++ G +TV++ EG S+LD E D P CR+G+CT CAA VT + A L PE GF+L+C + GPG+E+ L +++YE+QY + + ++ E K G Sbjct: 45 DVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEA-AVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPG 159
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|298708852|emb|CBJ30810.1| (ferredoxin [Ectocarpus siliculosus]) HSP 1 Score: 78.5666 bits (192), Expect = 4.845e-14 Identity = 36/124 (29.03%), Postives = 71/124 (57.26%), Query Frame = 0 Query: 58 KRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIF 181 +R WDV + +GE + ++V G S+L+AAE + + CR G C +CAA V G + + + + + GF+L+C T+P GPG+++ L+A E++++ A+ + + ++L ++ + Sbjct: 190 ERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVM 313
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|545701398|ref|XP_005703033.1| (ferredoxin [Galdieria sulphuraria] >gi|452819455|gb|EME26513.1| ferredoxin [Galdieria sulphuraria]) HSP 1 Score: 72.4034 bits (176), Expect = 6.571e-13 Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 0 Query: 64 VMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYE 165 V+ N + K + V +G +LL+A E + CR GVC TCA ++ G + AA+ S E +E+GF+L+C YP P +++ +N ++ YE QY K+E Sbjct: 59 VLYGNQQIKKIQVEQGQTLLEAMESSGLPADSSCRAGVCMTCAVKLLEGEVDNEEAALAS---EAKEAGFVLACSAYPLSPKVKIEINHGDDAYEMQYGKFE 157
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|546296978|ref|XP_005710076.1| (Ferredoxin [Chondrus crispus] >gi|507106100|emb|CDF39782.1| Ferredoxin [Chondrus crispus]) HSP 1 Score: 71.2478 bits (173), Expect = 6.660e-13 Identity = 35/108 (32.41%), Postives = 61/108 (56.48%), Query Frame = 0 Query: 59 RHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEK 166 R +DV + L GET + + E +LL+ EE + CR GVC TCAA++ G A S++ + ++ G++L+C +P G+++ +N ++ YE QY ++E Sbjct: 2 RVYDVEIQLYGETHMIPIDEDLTLLEGIEEFGLEVLYSCRAGVCMTCAAKILAGDVDLGAA---SITDDLKDQGYVLTCSGFPRSEGIKLEMNHFDDAYEKQYGQFEN 106
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|1054579401|ref|WP_066348218.1| (ferredoxin [Geminocystis sp. NIES-3708] >gi|770469585|dbj|BAQ62483.1| soluble [2Fe-2S] ferredoxin [Geminocystis sp. NIES-3708]) HSP 1 Score: 69.707 bits (169), Expect = 2.939e-12 Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0 Query: 68 NGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKY 164 N T+T++V E +L AE +PP CRNG CTTCA V RG + LSP+ Q G+ L C +YP L V ++EVYE Q+ +Y Sbjct: 14 NNTTETITVPENEYILKTAENQEVEPPFSCRNGACTTCAVRVIRG--DIYQPEAMGLSPDLQRKGYALLCVSYP-RSDLVVETQDEDEVYELQFGRY 107
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|1210195976|dbj|BAZ15030.1| (ferredoxin [Calothrix sp. NIES-4071] >gi|1210242158|dbj|BAZ61177.1| ferredoxin [Calothrix sp. NIES-4105]) HSP 1 Score: 68.5514 bits (166), Expect = 1.015e-11 Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 0 Query: 51 LEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAK 163 L L + + V ++ G+T T+ V E ++L AE+A + P C GVCTTCAA++T GG + +SPE Q+ G+ L C +YP L++ + +E VY+ Q+ K Sbjct: 8 LLSNLHMTQTYTVELNHQGKTLTIQVPENETVLAVAEKAGLELPASCHAGVCTTCAAKITNGGTVDQSEGM-GISPELQKDGYALLCVSYP-RSDLKIITDQEEVVYQQQFGK 118
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|504984042|ref|WP_015171144.1| ((2Fe-2S) ferredoxin [Geitlerinema sp. PCC 7407] >gi|427984433|gb|AFY65577.1| ferredoxin (2Fe-2S) [Geitlerinema sp. PCC 7407]) HSP 1 Score: 68.1662 bits (165), Expect = 1.441e-11 Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 0 Query: 68 NGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKA 168 G+ TV V E +L +AE D P +CRNG CT CA V G A LSP+ ++ G+ L C +YPC L V ++EVYE Q+ +Y K Sbjct: 14 TGKVYTVRVPEDRYILQSAENQGADLPFLCRNGACTACAVRVVSGELDQPEAM--GLSPKLRDQGYALLCVSYPCS-DLRVETQDEDEVYELQFGRYFGKG 111 The following BLAST results are available for this feature:
BLAST of EWM27804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31) Total hits: 10
Relationships
This CDS is a part of the following mRNA feature(s):
Sequences
Synonyms
Publications
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