EWM27804.1, cds2867 (CDS) Nannochloropsis gaditana

Overview
NameEWM27804.1
Unique Namecds2867
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:133031..133206 +
Alignment locationCM002460.1:133357..133729 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27804.1
Productphenylacetate- oxygenase subunit
Orig transcript idgnl|cribi|Naga_100149g9.2653.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:133031..133206 +
CM002460.1supercontigCM002460.1:133357..133729 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
GO annotation for N. gaditana B312020-04-08
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: Molecular Function
TermDefinition
GO:0005488binding
GO:0003824catalytic activity
GO:00515372 iron, 2 sulfur cluster binding
GO:0051536iron-sulfur cluster binding
GO:0009055electron transfer activity
Vocabulary: Biological Process
TermDefinition
GO:0006091generation of precursor metabolites and energy
Vocabulary: INTERPRO
TermDefinition
IPR0060582Fe2S_fd_BS
IPR012675Beta-grasp_dom
IPR0010412Fe-2S_ferredoxin-type
Homology
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|585110105|gb|EWM27804.1| (phenylacetate- oxygenase subunit [Nannochloropsis gaditana])

HSP 1 Score: 378.252 bits (970), Expect = 6.575e-133
Identity = 182/182 (100.00%), Postives = 182/182 (100.00%), Query Frame = 0
Query:    1 MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182
            MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA
Sbjct:    1 MKCITTALIVLPCIVSGFLVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|585110632|gb|EWM28287.1| (ferredoxin (2fe-2s) [Nannochloropsis gaditana])

HSP 1 Score: 152.525 bits (384), Expect = 7.416e-44
Identity = 88/179 (49.16%), Postives = 111/179 (62.01%), Query Frame = 0
Query:    7 ALIVLPCIVSGF---LVPAVPSITFSDSRAPTRLYVGSNAKIDVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIFA 182
            AL +L C +       VP VP +     RA     VG  A   VP +LEG+LDP + WDV M+  GETK ++VSE T +L+AAE+ + D PC CRNG+CTTCA  V      S   AI  LS EQ ++GF+L+CQT+PCGPGLEV L   + VYESQY +YEKKA    E+K  FN+F 
Sbjct:    5 ALTLLACFIFSIAQAFVPCVPGL-----RAKNAQRVG--AINVVPLELEGQLDPTKTWDVKMTYKGETKVLTVSEDTCILEAAEKEW-DVPCSCRNGICTTCAGRVI-ANPDSKKEAIHGLSAEQSKNGFVLTCQTHPCGPGLEVELGMYDTVYESQYGQYEKKA--TTEQKSKFNVFG 172          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|873233470|emb|CEM03311.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 135.191 bits (339), Expect = 1.483e-37
Identity = 63/121 (52.07%), Postives = 86/121 (71.07%), Query Frame = 0
Query:   46 DVPPDLEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHG-SWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYE 165
            +VP DLEGRLDP R W + ++ +G+ +TV V EGTS+L+AAE  + DPPC CRNGVCT+CA  +  G  G ++V   +SL    ++ G++L+CQTY CGPGL+V LN  EEVY  QY ++E
Sbjct:    5 EVPVDLEGRLDPSRSWTIELNYDGDIETVEVPEGTSVLEAAETVWEDPPCDCRNGVCTSCAGRIVGGKLGEAYVINRDSLEEVTKDKGYVLTCQTYVCGPGLKVELNKNEEVYGMQYGRFE 125          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|298706525|emb|CBJ29495.1| (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 79.337 bits (194), Expect = 2.221e-15
Identity = 43/116 (37.07%), Postives = 66/116 (56.90%), Query Frame = 0
Query:   62 DVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKG 177
            DV +++ G  +TV++ EG S+LD  E    D P  CR+G+CT CAA VT       + A   L PE    GF+L+C +   GPG+E+ L   +++YE+QY +  +  ++  E K G
Sbjct:   45 DVKVTVEGVVRTVALEEGVSILDGLEAHDIDAPHSCRSGLCTECAAMVTANLDNVKLEA-AVLDPEISARGFVLTCSSTVAGPGVELELGVGDKMYEAQYGELVQGHNDAQEAKPG 159          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|298708852|emb|CBJ30810.1| (ferredoxin [Ectocarpus siliculosus])

HSP 1 Score: 78.5666 bits (192), Expect = 4.845e-14
Identity = 36/124 (29.03%), Postives = 71/124 (57.26%), Query Frame = 0
Query:   58 KRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKAHEELEKKKGFNIF 181
            +R WDV +  +GE + ++V  G S+L+AAE +  +    CR G C +CAA V  G    +  + + +  +    GF+L+C T+P GPG+++ L+A  E++++  A+ +  + ++L ++    + 
Sbjct:  190 ERPWDVEVDFHGERRVITVQPGDSILEAAEMSGMNLSYECRRGNCISCAARVQNGSSSHFENSADRIPEDGAPDGFVLTCSTHPTGPGVKLDLSANAEMWDAYCARLDDISTQDLLRQTSAEVM 313          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|545701398|ref|XP_005703033.1| (ferredoxin [Galdieria sulphuraria] >gi|452819455|gb|EME26513.1| ferredoxin [Galdieria sulphuraria])

HSP 1 Score: 72.4034 bits (176), Expect = 6.571e-13
Identity = 37/102 (36.27%), Postives = 59/102 (57.84%), Query Frame = 0
Query:   64 VMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYE 165
            V+  N + K + V +G +LL+A E +       CR GVC TCA ++  G   +  AA+ S   E +E+GF+L+C  YP  P +++ +N  ++ YE QY K+E
Sbjct:   59 VLYGNQQIKKIQVEQGQTLLEAMESSGLPADSSCRAGVCMTCAVKLLEGEVDNEEAALAS---EAKEAGFVLACSAYPLSPKVKIEINHGDDAYEMQYGKFE 157          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|546296978|ref|XP_005710076.1| (Ferredoxin [Chondrus crispus] >gi|507106100|emb|CDF39782.1| Ferredoxin [Chondrus crispus])

HSP 1 Score: 71.2478 bits (173), Expect = 6.660e-13
Identity = 35/108 (32.41%), Postives = 61/108 (56.48%), Query Frame = 0
Query:   59 RHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEK 166
            R +DV + L GET  + + E  +LL+  EE   +    CR GVC TCAA++  G      A   S++ + ++ G++L+C  +P   G+++ +N  ++ YE QY ++E 
Sbjct:    2 RVYDVEIQLYGETHMIPIDEDLTLLEGIEEFGLEVLYSCRAGVCMTCAAKILAGDVDLGAA---SITDDLKDQGYVLTCSGFPRSEGIKLEMNHFDDAYEKQYGQFEN 106          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|1054579401|ref|WP_066348218.1| (ferredoxin [Geminocystis sp. NIES-3708] >gi|770469585|dbj|BAQ62483.1| soluble [2Fe-2S] ferredoxin [Geminocystis sp. NIES-3708])

HSP 1 Score: 69.707 bits (169), Expect = 2.939e-12
Identity = 39/97 (40.21%), Postives = 52/97 (53.61%), Query Frame = 0
Query:   68 NGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKY 164
            N  T+T++V E   +L  AE    +PP  CRNG CTTCA  V RG    +      LSP+ Q  G+ L C +YP    L V    ++EVYE Q+ +Y
Sbjct:   14 NNTTETITVPENEYILKTAENQEVEPPFSCRNGACTTCAVRVIRG--DIYQPEAMGLSPDLQRKGYALLCVSYP-RSDLVVETQDEDEVYELQFGRY 107          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|1210195976|dbj|BAZ15030.1| (ferredoxin [Calothrix sp. NIES-4071] >gi|1210242158|dbj|BAZ61177.1| ferredoxin [Calothrix sp. NIES-4105])

HSP 1 Score: 68.5514 bits (166), Expect = 1.015e-11
Identity = 40/113 (35.40%), Postives = 63/113 (55.75%), Query Frame = 0
Query:   51 LEGRLDPKRHWDVVMSLNGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAK 163
            L   L   + + V ++  G+T T+ V E  ++L  AE+A  + P  C  GVCTTCAA++T GG       +  +SPE Q+ G+ L C +YP    L++  + +E VY+ Q+ K
Sbjct:    8 LLSNLHMTQTYTVELNHQGKTLTIQVPENETVLAVAEKAGLELPASCHAGVCTTCAAKITNGGTVDQSEGM-GISPELQKDGYALLCVSYP-RSDLKIITDQEEVVYQQQFGK 118          
BLAST of EWM27804.1 vs. NCBI_GenBank
Match: gi|504984042|ref|WP_015171144.1| ((2Fe-2S) ferredoxin [Geitlerinema sp. PCC 7407] >gi|427984433|gb|AFY65577.1| ferredoxin (2Fe-2S) [Geitlerinema sp. PCC 7407])

HSP 1 Score: 68.1662 bits (165), Expect = 1.441e-11
Identity = 39/101 (38.61%), Postives = 52/101 (51.49%), Query Frame = 0
Query:   68 NGETKTVSVSEGTSLLDAAEEAFGDPPCMCRNGVCTTCAAEVTRGGHGSWVAAIESLSPEQQESGFILSCQTYPCGPGLEVRLNAQEEVYESQYAKYEKKA 168
             G+  TV V E   +L +AE    D P +CRNG CT CA  V  G      A    LSP+ ++ G+ L C +YPC   L V    ++EVYE Q+ +Y  K 
Sbjct:   14 TGKVYTVRVPEDRYILQSAENQGADLPFLCRNGACTACAVRVVSGELDQPEAM--GLSPKLRDQGYALLCVSYPCS-DLRVETQDEDEVYELQFGRYFGKG 111          
The following BLAST results are available for this feature:
BLAST of EWM27804.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110105|gb|EWM27804.1|6.575e-133100.00phenylacetate- oxygenase subunit [Nannochloropsis ... [more]
gi|585110632|gb|EWM28287.1|7.416e-4449.16ferredoxin (2fe-2s) [Nannochloropsis gaditana][more]
gi|873233470|emb|CEM03311.1|1.483e-3752.07unnamed protein product [Vitrella brassicaformis C... [more]
gi|298706525|emb|CBJ29495.1|2.221e-1537.07ferredoxin [Ectocarpus siliculosus][more]
gi|298708852|emb|CBJ30810.1|4.845e-1429.03ferredoxin [Ectocarpus siliculosus][more]
gi|545701398|ref|XP_005703033.1|6.571e-1336.27ferredoxin [Galdieria sulphuraria] >gi|452819455|g... [more]
gi|546296978|ref|XP_005710076.1|6.660e-1332.41Ferredoxin [Chondrus crispus] >gi|507106100|emb|CD... [more]
gi|1054579401|ref|WP_066348218.1|2.939e-1240.21ferredoxin [Geminocystis sp. NIES-3708] >gi|770469... [more]
gi|1210195976|dbj|BAZ15030.1|1.015e-1135.40ferredoxin [Calothrix sp. NIES-4071] >gi|121024215... [more]
gi|504984042|ref|WP_015171144.1|1.441e-1138.61(2Fe-2S) ferredoxin [Geitlerinema sp. PCC 7407] >g... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2875rna2875Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications