rna2869, rna2869 (mRNA) Nannochloropsis gaditana | NanDeSyn: Nannochloropsis Design & Synthesis Initiative

Overview


Name	rna2869
Unique Name	rna2869
Type	mRNA
Organism	Nannochloropsis gaditana (N. gaditana B-31)
Sequence length	371
Alignment location	CM002460.1:112185..114299 +

Link to JBrowse

Properties


Property Name	Value
Product	Autophagy-related protein
Orig transcript id	gnl\|cribi\|Naga_101304g1.1368.mrna
Orig protein id	gnl\|cribi\|Naga_101304g1.1368
Gbkey	mRNA

Mutants

Expression

No biomaterial libraries express this feature.

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
CM002460.1	supercontig	CM002460.1:112185..114299 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gene prediction for N. gaditana B-31	2014-02-18

Annotated Terms

Homology

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
Naga_101304g1	gene2745	Nannochloropsis gaditana (N. gaditana B-31)	gene

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type
rna2869	rna2869-protein	Nannochloropsis gaditana (N. gaditana B-31)	polypeptide

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type
EWM27812.1	cds2861	Nannochloropsis gaditana (N. gaditana B-31)	CDS

Sequences

The following sequences are available for this feature:

mRNA sequence
protein sequence
mRNA from alignment at CM002460.1:112185..114299+
coding sequence from alignment at CM002460.1:112185..114299+

mRNA sequence

>rna2869 ID=rna2869|Name=rna2869|organism=Nannochloropsis gaditana|type=mRNA|length=371bp
TCCTCCCTCCCTCCCTCCCTCCTCCTCTTTCCCAGCTGCGAAGCCTCGGA
GTTTGGTGAAGTGAAACTCTACGATGTGGTGCCTAACGGTCGTCACGTGC
CGGTCACCGACGAGAACAAGATGGAGTACATCCAAAAAATTGCCCAGTTC
CGCCTGACTAACGCCATCAAGAAGCAGACCGAAGCCTTCCTGTCAGGTCT
TCACGATCTTGTCCCAAAGGATCTGGTGGCTATTTTCACCCCCTCGGAAC
TCGAACTTCTCTCCTGCGGTCTCCCCTCCATCGATTTGGACAACCTCAAG
TCCCACACCGAACTCCACCATTGGAAAACTTCTGACAAAGAGATCCAGTG
GTTCTGGGAGGTATGCTCCCT

protein sequence of rna2869

>rna2869-protein ID=rna2869-protein|Name=rna2869|organism=Nannochloropsis gaditana|type=polypeptide|length=344bp
MVRKRGRWRQAVGIRTHPNGNREVGSQGGAEGAPSVMVPSKEWAQGKIVV
IEMHERVVGNGKHRSRKMQERERHQMKKKASLYLVSRSWCSLGRQVIRMF
YMFKASSTPCDRFQCMKMPDACDPYILTITGDKITYPRRSQKIFLTFQSP
LTFRTIVLYDSSFGVDMMEQDHAHAEQREEKSAVEASSNGTALSSASERT
TSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGARE
KGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGR
SWDEKQRKWIRGGDSHRGRDQESVLQEGSGLPSGSPPGGCRGAR

mRNA from alignment at CM002460.1:112185..114299+

Legend: polypeptideCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

>rna2869 ID=rna2869|Name=rna2869|organism=Nannochloropsis gaditana|type=mRNA|length=2115bp|location=Sequence derived from alignment at CM002460.1:112185..114299+ (Nannochloropsis gaditana)
ATGGTGCGAAAGCGAGGACGATGGCGTCAAGCGGTGGGgtatggagggag
aaggctgACTTCGAATTTGAACGTGGGGACAGAGGGCAAAGCAAGAAACT
TGCTTTGAAGGAACTCGCACTGAGTTTAAGAGACTACAtaaatgaagaag
aggaaatagATGTGAAGTATACGGACGCACCCAAACGGGAATCGGGAAGT
AGGGAGCCAGGGAGGTGCAGAGGGAGCGCCTAGCGTGATGGTACCTTCCA
AAGAATGGGCTCAGGGGAAGATAGTAGTAATTGAGATGCATGAAAGAGTT
GTAGGAAATGGCAAGCACAGATCCAGAAAGATGCAAGAGCGCGAAAGGCA
TcaaatgaagaaaaaggctTCCCTTTACCTTGTGTCGCGCTCCTGGTGTT
CTCTCGGCCGTCAAGTGATTCGAATGTTCTACATGTTTAAAGCTTCTTCG
ACGCCATGCGACAGGTTTCAGTGTATGAAAATGCCCGATGCATGTGACCC
CTATATTCTTACGATTACGGGGGACAAAATAACGTATCCCCGCCGCTCCC
AGAAAATTTTCCTCACATTCCAAAGGTGAATCGGTGCCGAAATAATgcgc
aggaaaaaaggaagcaagTATGGCGGAATAAAAGACCAGAATCCATGCTG
AATTTCCTTTCGGAAATGGAGATTTTTTCTAACCGAGGGATGCAAGTCTC
TCAACACTTGTGTCAATCCGTTCCTAGAGGTCACTTGGGAAAAAAGCTCA
TAGAATGTTGGTAATTTTGTGCAATTTCATAAGAGATCTTACGCAGAAAA
GGGATCCAAAAGCGGAGTGCCTTTTGTTGTTTCCTGTGTTCCGAGACCGC
TCCTGCCTGCTCAAAGAATCATACCCGGACCTTCAGCGGGAAACCGTCAC
ATTCGTGCTCACACGACATACATACCCTTGCTATTGACAGTCCACTCACT
TTTCGTACAATCGTGCTGTACGACAGCAGCTTCGGGGTAGACATGATGGA
GCAAGATCATGCGCACGCAgagcagcgggaggagaaaagtGCGGTGGAAG
CGTCTTCAAACGGTGCGTTTCGGTGTCTTCCATTTTGGCGGAGCATAAAA
CCCTGACATCCATAGTATGTCTTCCCTTCGTTTTTTGGCAATACAAGTTC
ACTAGCCATCTTATCCTCCATGCTCTGTGCTTGTCCACCGCTTTTTCCCA
GGCAcagccttgtcctccgcgtCGGAGCGCACGACATCAAATCCCAagac
cccctcctccttcctttcttacGCCCCCCGTGACGCCTCAGAGGGCTTGG
CAGAGGGACTGAAATCCATCGCCCTCGGCGTCGGCGCGGGCGTTGCAGGC
TTAGTGGCCATGCCCGTGGttggagcgagggagaaaggcgtgTCGGGGTT
CTTCAAAGGGCTTGGGCAAGGCGTCCTAGGGGCCGTGGTCCTTCCGACTG
TGGGGGTCGTGAATGGCGTGGTGGAGATAGGGGCGGGCATTGTGAATACA
CCAGAGGTACGTGACACGAAGGCGGTGGATAATTTCGATTTTTTCGTGCC
TGCAGCTCCGAGTTATCCCACagtcgggggaggggttgaTTCAGCATTTT
TTATGCGTGAGTTGCCAAGCTTCCTATGCGCTGAGGGTCTTAAAACGGTA
TTagaccggagggaggaagggggggactAGGTGATTGCAACAAAAATCAG
GGTAAAGGCAAAGCTTTGGTCGCCTTATTGAAAGAAGGACGATGGGAAAC
GTGGGGTCAcggttttcctcctctccttcccgcccctttGCCCTTCAGAG
TGTGAATGCCCGAATGGAAGGGCGGTCTTGGGACGAGAAACAGCGGAAAT
GGATCCGTTACGatttgaaggaagaggccaCCCGGGTCTtccaggaggag
aaggaggaagaagaaaaagagaaacGGGCGcggcaggagagagggagggc
cggggggcaggggcgggcggggggaggggtcaagGACACTACCTACTACA
CCCtgttggaggtggaggcgacaGCCACAGGGGAAGAGATCAAGAAAGCG
TACTACAAGAAGGCTCGGGCCTGCCATCCGGATCGCCACCCGGGGGATGC
CGAGGCGcacggtag

Coding sequence (CDS) from alignment at CM002460.1:112185..114299+

>rna2869 ID=rna2869|Name=rna2869|organism=Nannochloropsis gaditana|type=CDS|length=6210bp|location=Sequence derived from alignment at CM002460.1:112185..114299+ (Nannochloropsis gaditana)
ATGGTGCGAAAGCGAGGACGATGGCGTCAAGCGGTGGGTATACGGACGCA
CCCAAACGGGAATCGGGAAGTAGGGAGCCAGGGAGGTGCAGAGGGAGCGC
CTAGCGTGATGGTACCTTCCAAAGAATGGGCTCAGGGGAAGATAGTAGTA
ATTGAGATGCATGAAAGAGTTGTAGGAAATGGCAAGCACAGATCCAGAAA
GATGCAAGAGCGCGAAAGGCATcaaatgaagaaaaaggctTCCCTTTACC
TTGTGTCGCGCTCCTGGTGTTCTCTCGGCCGTCAAGTGATTCGAATGTTC
TACATGTTTAAAGCTTCTTCGACGCCATGCGACAGGTTTCAGTGTATGAA
AATGCCCGATGCATGTGACCCCTATATTCTTACGATTACGGGGGACAAAA
TAACGTATCCCCGCCGCTCCCAGAAAATTTTCCTCACATTCCAAAGTCCA
CTCACTTTTCGTACAATCGTGCTGTACGACAGCAGCTTCGGGGTAGACAT
GATGGAGCAAGATCATGCGCACGCAgagcagcgggaggagaaaagtGCGG
TGGAAGCGTCTTCAAACGGCAcagccttgtcctccgcgtCGGAGCGCACG
ACATCAAATCCCAagaccccctcctccttcctttcttacGCCCCCCGTGA
CGCCTCAGAGGGCTTGGCAGAGGGACTGAAATCCATCGCCCTCGGCGTCG
GCGCGGGCGTTGCAGGCTTAGTGGCCATGCCCGTGGttggagcgagggag
aaaggcgtgTCGGGGTTCTTCAAAGGGCTTGGGCAAGGCGTCCTAGGGGC
CGTGGTCCTTCCGACTGTGGGGGTCGTGAATGGCGTGGTGGAGATAGGGG
CGGGCATTGTGAATACACCAGAGAGTGTGAATGCCCGAATGGAAGGGCGG
TCTTGGGACGAGAAACAGCGGAAATGGATCCgtggaggcgacaGCCACAG
GGGAAGAGATCAAGAAAGCGTACTACAAGAAGGCTCGGGCCTGCCATCCG
GATCGCCACCCGGGGGATGCCGAGGCGcacggtagATGGTGCGAAAGCGA
GGACGATGGCGTCAAGCGGTGGGTATACGGACGCACCCAAACGGGAATCG
GGAAGTAGGGAGCCAGGGAGGTGCAGAGGGAGCGCCTAGCGTGATGGTAC
CTTCCAAAGAATGGGCTCAGGGGAAGATAGTAGTAATTGAGATGCATGAA
AGAGTTGTAGGAAATGGCAAGCACAGATCCAGAAAGATGCAAGAGCGCGA
AAGGCATcaaatgaagaaaaaggctTCCCTTTACCTTGTGTCGCGCTCCT
GGTGTTCTCTCGGCCGTCAAGTGATTCGAATGTTCTACATGTTTAAAGCT
TCTTCGACGCCATGCGACAGGTTTCAGTGTATGAAAATGCCCGATGCATG
TGACCCCTATATTCTTACGATTACGGGGGACAAAATAACGTATCCCCGCC
GCTCCCAGAAAATTTTCCTCACATTCCAAAGTCCACTCACTTTTCGTACA
ATCGTGCTGTACGACAGCAGCTTCGGGGTAGACATGATGGAGCAAGATCA
TGCGCACGCAgagcagcgggaggagaaaagtGCGGTGGAAGCGTCTTCAA
ACGGCAcagccttgtcctccgcgtCGGAGCGCACGACATCAAATCCCAag
accccctcctccttcctttcttacGCCCCCCGTGACGCCTCAGAGGGCTT
GGCAGAGGGACTGAAATCCATCGCCCTCGGCGTCGGCGCGGGCGTTGCAG
GCTTAGTGGCCATGCCCGTGGttggagcgagggagaaaggcgtgTCGGGG
TTCTTCAAAGGGCTTGGGCAAGGCGTCCTAGGGGCCGTGGTCCTTCCGAC
TGTGGGGGTCGTGAATGGCGTGGTGGAGATAGGGGCGGGCATTGTGAATA
CACCAGAGAGTGTGAATGCCCGAATGGAAGGGCGGTCTTGGGACGAGAAA
CAGCGGAAATGGATCCgtggaggcgacaGCCACAGGGGAAGAGATCAAGA
AAGCGTACTACAAGAAGGCTCGGGCCTGCCATCCGGATCGCCACCCGGGG
GATGCCGAGGCGcacggtagATGGTGCGAAAGCGAGGACGATGGCGTCAA
GCGGTGGGTATACGGACGCACCCAAACGGGAATCGGGAAGTAGGGAGCCA
GGGAGGTGCAGAGGGAGCGCCTAGCGTGATGGTACCTTCCAAAGAATGGG
CTCAGGGGAAGATAGTAGTAATTGAGATGCATGAAAGAGTTGTAGGAAAT
GGCAAGCACAGATCCAGAAAGATGCAAGAGCGCGAAAGGCATcaaatgaa
gaaaaaggctTCCCTTTACCTTGTGTCGCGCTCCTGGTGTTCTCTCGGCC
GTCAAGTGATTCGAATGTTCTACATGTTTAAAGCTTCTTCGACGCCATGC
GACAGGTTTCAGTGTATGAAAATGCCCGATGCATGTGACCCCTATATTCT
TACGATTACGGGGGACAAAATAACGTATCCCCGCCGCTCCCAGAAAATTT
TCCTCACATTCCAAAGTCCACTCACTTTTCGTACAATCGTGCTGTACGAC
AGCAGCTTCGGGGTAGACATGATGGAGCAAGATCATGCGCACGCAgagca
gcgggaggagaaaagtGCGGTGGAAGCGTCTTCAAACGGCAcagccttgt
cctccgcgtCGGAGCGCACGACATCAAATCCCAagaccccctcctccttc
ctttcttacGCCCCCCGTGACGCCTCAGAGGGCTTGGCAGAGGGACTGAA
ATCCATCGCCCTCGGCGTCGGCGCGGGCGTTGCAGGCTTAGTGGCCATGC
CCGTGGttggagcgagggagaaaggcgtgTCGGGGTTCTTCAAAGGGCTT
GGGCAAGGCGTCCTAGGGGCCGTGGTCCTTCCGACTGTGGGGGTCGTGAA
TGGCGTGGTGGAGATAGGGGCGGGCATTGTGAATACACCAGAGAGTGTGA
ATGCCCGAATGGAAGGGCGGTCTTGGGACGAGAAACAGCGGAAATGGATC
CgtggaggcgacaGCCACAGGGGAAGAGATCAAGAAAGCGTACTACAAGA
AGGCTCGGGCCTGCCATCCGGATCGCCACCCGGGGGATGCCGAGGCGcac
ggtagATGGTGCGAAAGCGAGGACGATGGCGTCAAGCGGTGGGTATACGG
ACGCACCCAAACGGGAATCGGGAAGTAGGGAGCCAGGGAGGTGCAGAGGG
AGCGCCTAGCGTGATGGTACCTTCCAAAGAATGGGCTCAGGGGAAGATAG
TAGTAATTGAGATGCATGAAAGAGTTGTAGGAAATGGCAAGCACAGATCC
AGAAAGATGCAAGAGCGCGAAAGGCATcaaatgaagaaaaaggctTCCCT
TTACCTTGTGTCGCGCTCCTGGTGTTCTCTCGGCCGTCAAGTGATTCGAA
TGTTCTACATGTTTAAAGCTTCTTCGACGCCATGCGACAGGTTTCAGTGT
ATGAAAATGCCCGATGCATGTGACCCCTATATTCTTACGATTACGGGGGA
CAAAATAACGTATCCCCGCCGCTCCCAGAAAATTTTCCTCACATTCCAAA
GTCCACTCACTTTTCGTACAATCGTGCTGTACGACAGCAGCTTCGGGGTA
GACATGATGGAGCAAGATCATGCGCACGCAgagcagcgggaggagaaaag
tGCGGTGGAAGCGTCTTCAAACGGCAcagccttgtcctccgcgtCGGAGC
GCACGACATCAAATCCCAagaccccctcctccttcctttcttacGCCCCC
CGTGACGCCTCAGAGGGCTTGGCAGAGGGACTGAAATCCATCGCCCTCGG
CGTCGGCGCGGGCGTTGCAGGCTTAGTGGCCATGCCCGTGGttggagcga
gggagaaaggcgtgTCGGGGTTCTTCAAAGGGCTTGGGCAAGGCGTCCTA
GGGGCCGTGGTCCTTCCGACTGTGGGGGTCGTGAATGGCGTGGTGGAGAT
AGGGGCGGGCATTGTGAATACACCAGAGAGTGTGAATGCCCGAATGGAAG
GGCGGTCTTGGGACGAGAAACAGCGGAAATGGATCCgtggaggcgacaGC
CACAGGGGAAGAGATCAAGAAAGCGTACTACAAGAAGGCTCGGGCCTGCC
ATCCGGATCGCCACCCGGGGGATGCCGAGGCGcacggtagATGGTGCGAA
AGCGAGGACGATGGCGTCAAGCGGTGGGTATACGGACGCACCCAAACGGG
AATCGGGAAGTAGGGAGCCAGGGAGGTGCAGAGGGAGCGCCTAGCGTGAT
GGTACCTTCCAAAGAATGGGCTCAGGGGAAGATAGTAGTAATTGAGATGC
ATGAAAGAGTTGTAGGAAATGGCAAGCACAGATCCAGAAAGATGCAAGAG
CGCGAAAGGCATcaaatgaagaaaaaggctTCCCTTTACCTTGTGTCGCG
CTCCTGGTGTTCTCTCGGCCGTCAAGTGATTCGAATGTTCTACATGTTTA
AAGCTTCTTCGACGCCATGCGACAGGTTTCAGTGTATGAAAATGCCCGAT
GCATGTGACCCCTATATTCTTACGATTACGGGGGACAAAATAACGTATCC
CCGCCGCTCCCAGAAAATTTTCCTCACATTCCAAAGTCCACTCACTTTTC
GTACAATCGTGCTGTACGACAGCAGCTTCGGGGTAGACATGATGGAGCAA
GATCATGCGCACGCAgagcagcgggaggagaaaagtGCGGTGGAAGCGTC
TTCAAACGGCAcagccttgtcctccgcgtCGGAGCGCACGACATCAAATC
CCAagaccccctcctccttcctttcttacGCCCCCCGTGACGCCTCAGAG
GGCTTGGCAGAGGGACTGAAATCCATCGCCCTCGGCGTCGGCGCGGGCGT
TGCAGGCTTAGTGGCCATGCCCGTGGttggagcgagggagaaaggcgtgT
CGGGGTTCTTCAAAGGGCTTGGGCAAGGCGTCCTAGGGGCCGTGGTCCTT
CCGACTGTGGGGGTCGTGAATGGCGTGGTGGAGATAGGGGCGGGCATTGT
GAATACACCAGAGAGTGTGAATGCCCGAATGGAAGGGCGGTCTTGGGACG
AGAAACAGCGGAAATGGATCCgtggaggcgacaGCCACAGGGGAAGAGAT
CAAGAAAGCGTACTACAAGAAGGCTCGGGCCTGCCATCCGGATCGCCACC
CGGGGGATGCCGAGGCGcacggtagATGGTGCGAAAGCGAGGACGATGGC
GTCAAGCGGTGGGTATACGGACGCACCCAAACGGGAATCGGGAAGTAGGG
AGCCAGGGAGGTGCAGAGGGAGCGCCTAGCGTGATGGTACCTTCCAAAGA
ATGGGCTCAGGGGAAGATAGTAGTAATTGAGATGCATGAAAGAGTTGTAG
GAAATGGCAAGCACAGATCCAGAAAGATGCAAGAGCGCGAAAGGCATcaa
atgaagaaaaaggctTCCCTTTACCTTGTGTCGCGCTCCTGGTGTTCTCT
CGGCCGTCAAGTGATTCGAATGTTCTACATGTTTAAAGCTTCTTCGACGC
CATGCGACAGGTTTCAGTGTATGAAAATGCCCGATGCATGTGACCCCTAT
ATTCTTACGATTACGGGGGACAAAATAACGTATCCCCGCCGCTCCCAGAA
AATTTTCCTCACATTCCAAAGTCCACTCACTTTTCGTACAATCGTGCTGT
ACGACAGCAGCTTCGGGGTAGACATGATGGAGCAAGATCATGCGCACGCA
gagcagcgggaggagaaaagtGCGGTGGAAGCGTCTTCAAACGGCAcagc
cttgtcctccgcgtCGGAGCGCACGACATCAAATCCCAagaccccctcct
ccttcctttcttacGCCCCCCGTGACGCCTCAGAGGGCTTGGCAGAGGGA
CTGAAATCCATCGCCCTCGGCGTCGGCGCGGGCGTTGCAGGCTTAGTGGC
CATGCCCGTGGttggagcgagggagaaaggcgtgTCGGGGTTCTTCAAAG
GGCTTGGGCAAGGCGTCCTAGGGGCCGTGGTCCTTCCGACTGTGGGGGTC
GTGAATGGCGTGGTGGAGATAGGGGCGGGCATTGTGAATACACCAGAGAG
TGTGAATGCCCGAATGGAAGGGCGGTCTTGGGACGAGAAACAGCGGAAAT
GGATCCgtggaggcgacaGCCACAGGGGAAGAGATCAAGAAAGCGTACTA
CAAGAAGGCTCGGGCCTGCCATCCGGATCGCCACCCGGGGGATGCCGAGG
CGcacggtag

Synonyms

Publications