EWM27812.1, cds2861 (CDS) Nannochloropsis gaditana

Overview
NameEWM27812.1
Unique Namecds2861
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:112185..112222 +
Alignment locationCM002460.1:112352..112759 +
Alignment locationCM002460.1:113125..113246 +
Alignment locationCM002460.1:113386..113690 +
Alignment locationCM002460.1:113983..114040 +
Alignment locationCM002460.1:114196..114299 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27812.1
ProductAutophagy-related protein
Orig transcript idgnl|cribi|Naga_101304g1.1368.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:112185..112222 +
CM002460.1supercontigCM002460.1:112352..112759 +
CM002460.1supercontigCM002460.1:113125..113246 +
CM002460.1supercontigCM002460.1:113386..113690 +
CM002460.1supercontigCM002460.1:113983..114040 +
CM002460.1supercontigCM002460.1:114196..114299 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
The following terms have been associated with this CDS:
Vocabulary: INTERPRO
TermDefinition
IPR026847VPS13
IPR015412Autophagy-rel_C
Homology
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|585110116|gb|EWM27812.1| (Autophagy-related protein [Nannochloropsis gaditana])

HSP 1 Score: 706.442 bits (1822), Expect = 0.000e+0
Identity = 344/344 (100.00%), Postives = 344/344 (100.00%), Query Frame = 0
Query:    1 MVRKRGRWRQAVGIRTHPNGNREVGSQGGAEGAPSVMVPSKEWAQGKIVVIEMHERVVGNGKHRSRKMQERERHQMKKKASLYLVSRSWCSLGRQVIRMFYMFKASSTPCDRFQCMKMPDACDPYILTITGDKITYPRRSQKIFLTFQSPLTFRTIVLYDSSFGVDMMEQDHAHAEQREEKSAVEASSNGTALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIRGGDSHRGRDQESVLQEGSGLPSGSPPGGCRGAR 344
            MVRKRGRWRQAVGIRTHPNGNREVGSQGGAEGAPSVMVPSKEWAQGKIVVIEMHERVVGNGKHRSRKMQERERHQMKKKASLYLVSRSWCSLGRQVIRMFYMFKASSTPCDRFQCMKMPDACDPYILTITGDKITYPRRSQKIFLTFQSPLTFRTIVLYDSSFGVDMMEQDHAHAEQREEKSAVEASSNGTALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIRGGDSHRGRDQESVLQEGSGLPSGSPPGGCRGAR
Sbjct:    1 MVRKRGRWRQAVGIRTHPNGNREVGSQGGAEGAPSVMVPSKEWAQGKIVVIEMHERVVGNGKHRSRKMQERERHQMKKKASLYLVSRSWCSLGRQVIRMFYMFKASSTPCDRFQCMKMPDACDPYILTITGDKITYPRRSQKIFLTFQSPLTFRTIVLYDSSFGVDMMEQDHAHAEQREEKSAVEASSNGTALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIRGGDSHRGRDQESVLQEGSGLPSGSPPGGCRGAR 344          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|553188957|ref|XP_005854901.1| (dnaj dnaj protein, partial [Nannochloropsis gaditana CCMP526] >gi|422294160|gb|EKU21460.1| dnaj dnaj protein, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 280.026 bits (715), Expect = 9.258e-92
Identity = 143/145 (98.62%), Postives = 143/145 (98.62%), Query Frame = 0
Query:  167 MMEQDHAHAEQREEKSAVEASSNGTALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIR 311
            MMEQDHAHAEQREEKSAVEASSN  ALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIR
Sbjct:    1 MMEQDHAHAEQREEKSAVEASSN--ALSSASERTTSNPKTPSSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWIR 143          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|873222138|emb|CEM31897.1| (unnamed protein product [Vitrella brassicaformis CCMP3155])

HSP 1 Score: 117.472 bits (293), Expect = 2.482e-25
Identity = 55/101 (54.46%), Postives = 72/101 (71.29%), Query Frame = 0
Query:  210 FLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            F +  P+DA  G+A G+KS+  GV AGVA LVA P++GARE+GVSGFFKG   GV  AV+LP  GV     +IG GI+NTPE +  R +GR WD+K+R+W+
Sbjct:   69 FSTRKPKDAIAGVASGVKSVGKGVLAGVASLVANPIMGAREEGVSGFFKGCAAGVASAVILPVTGVGVACYQIGRGIINTPECIAERTQGRKWDKKKREWV 169          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|159476466|ref|XP_001696332.1| (DnaJ-like protein [Chlamydomonas reinhardtii] >gi|158282557|gb|EDP08309.1| DnaJ-like protein [Chlamydomonas reinhardtii])

HSP 1 Score: 112.849 bits (281), Expect = 6.753e-24
Identity = 55/96 (57.29%), Postives = 70/96 (72.92%), Query Frame = 0
Query:  215 PRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            PRDA  GLA GLKSIA G+  G AGLVA P+VGA + GV+GF KGL  GV+GAVVLP  GV  G V++  G++NTPE+V    +G+ WDE +R+W+
Sbjct:   37 PRDAGAGLASGLKSIAKGILGGAAGLVAAPIVGASQGGVTGFAKGLASGVVGAVVLPVTGVGVGAVQLVRGVINTPEAVMQSSQGKLWDESRREWV 132          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|1004144167|gb|KXZ52148.1| (hypothetical protein GPECTOR_10g777 [Gonium pectorale])

HSP 1 Score: 108.227 bits (269), Expect = 2.515e-22
Identity = 55/96 (57.29%), Postives = 68/96 (70.83%), Query Frame = 0
Query:  215 PRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            PRDA  GLA GLKSIA GV  G AGLVA P+VGA+  GV+GF KGL  GV+GAVVLP  GV  G V++  G++NTPE+V    +   WDE++R W+
Sbjct:   30 PRDAKAGLASGLKSIAKGVLGGAAGLVAAPIVGAQRDGVTGFAKGLASGVVGAVVLPVTGVGVGAVQMVRGVINTPEAVMQASKDMLWDEERRVWV 125          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|760448443|ref|XP_011401290.1| (Chaperone protein dnaJ 10 [Auxenochlorella protothecoides] >gi|675355836|gb|KFM28276.1| Chaperone protein dnaJ 10 [Auxenochlorella protothecoides])

HSP 1 Score: 107.071 bits (266), Expect = 2.533e-22
Identity = 51/103 (49.51%), Postives = 72/103 (69.90%), Query Frame = 0
Query:  208 SSFLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            S F    P+DA  GL+ GLKS+A GV AG  GLVA P +GA++ G+ GF KG G G++GAVVLP  G+V G  ++  G+ NTPE+++A   G++WDE++R W+
Sbjct:   20 SVFSLRKPKDARAGLSSGLKSVAKGVLAGTVGLVAAPTIGAQQDGLMGFAKGAGAGLMGAVVLPVAGLVVGTTQLVRGLANTPEAISAARAGKAWDEERRTWV 122          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|1098425633|gb|OII73758.1| (hypothetical protein cubi_03556 [Cryptosporidium ubiquitum])

HSP 1 Score: 108.227 bits (269), Expect = 2.620e-22
Identity = 50/101 (49.50%), Postives = 68/101 (67.33%), Query Frame = 0
Query:  210 FLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            F +  PRDA  G + G+K++  GV AGVA LVA PVVGA  +GVSGFFKG+G G++ AV LP   V     ++  G+ NTPE+++   +GR WD+K R+WI
Sbjct:   96 FSTRRPRDAMAGFSSGMKTVGKGVAAGVATLVAAPVVGAATEGVSGFFKGMGAGIVAAVALPVTAVGVAGYQMARGVANTPEAISESNKGRKWDKKNRQWI 196          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|302829206|ref|XP_002946170.1| (molecular chaperone [Volvox carteri f. nagariensis] >gi|300268985|gb|EFJ53165.1| molecular chaperone [Volvox carteri f. nagariensis])

HSP 1 Score: 107.842 bits (268), Expect = 3.235e-22
Identity = 55/90 (61.11%), Postives = 65/90 (72.22%), Query Frame = 0
Query:  215 PRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDE 304
            PRDA  GLA GLKSIA GV  G AGLVA P+VGAR +G++GF KGL QGV+GAVVLP  GV  G V+   G++NTPE+V     G+ WDE
Sbjct:   31 PRDARAGLASGLKSIAKGVLGGAAGLVAAPIVGARSEGLAGFAKGLTQGVIGAVVLPVTGVGVGTVQFVRGVINTPEAVVQAQNGKLWDE 120          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|66360219|ref|XP_627223.1| (DNAJ'DNAJ protein' [Cryptosporidium parvum Iowa II] >gi|46228629|gb|EAK89499.1| DNAJ'DNAJ protein' [Cryptosporidium parvum Iowa II])

HSP 1 Score: 107.457 bits (267), Expect = 4.976e-22
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0
Query:  210 FLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            F +  PRDA  G + G+K++  GV AGVA LVA PVVGA  +GVSGFFKG+G G++ AV LP   V     ++  G+ NTPE++    +GR WD+K R+WI
Sbjct:   96 FSTRRPRDAMAGFSSGMKTVGKGVAAGVATLVAAPVVGAATEGVSGFFKGMGAGLVAAVALPVTAVGVAGYQMARGVANTPEAITESNKGRKWDKKNRQWI 196          
BLAST of EWM27812.1 vs. NCBI_GenBank
Match: gi|67624473|ref|XP_668519.1| (hypothetical protein [Cryptosporidium hominis TU502] >gi|961502474|emb|CUV07878.1| unnamed protein product [Cryptosporidium hominis] >gi|1129249154|gb|OLQ17340.1| X-domain of DnaJ-containing [Cryptosporidium hominis])

HSP 1 Score: 107.457 bits (267), Expect = 5.895e-22
Identity = 50/101 (49.50%), Postives = 67/101 (66.34%), Query Frame = 0
Query:  210 FLSYAPRDASEGLAEGLKSIALGVGAGVAGLVAMPVVGAREKGVSGFFKGLGQGVLGAVVLPTVGVVNGVVEIGAGIVNTPESVNARMEGRSWDEKQRKWI 310
            F +  PRDA  G + G+K++  GV AGVA LVA PVVGA  +GVSGFFKG+G G++ AV LP   V     ++  G+ NTPE++    +GR WD+K R+WI
Sbjct:   96 FSTRRPRDAMAGFSSGMKTVGKGVAAGVATLVAAPVVGAATEGVSGFFKGMGAGLVAAVALPVTAVGVAGYQMARGVANTPEAITESNKGRKWDKKNRQWI 196          
The following BLAST results are available for this feature:
BLAST of EWM27812.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 10
Match NameE-valueIdentityDescription
gi|585110116|gb|EWM27812.1|0.000e+0100.00Autophagy-related protein [Nannochloropsis gaditan... [more]
gi|553188957|ref|XP_005854901.1|9.258e-9298.62dnaj dnaj protein, partial [Nannochloropsis gadita... [more]
gi|873222138|emb|CEM31897.1|2.482e-2554.46unnamed protein product [Vitrella brassicaformis C... [more]
gi|159476466|ref|XP_001696332.1|6.753e-2457.29DnaJ-like protein [Chlamydomonas reinhardtii] >gi|... [more]
gi|1004144167|gb|KXZ52148.1|2.515e-2257.29hypothetical protein GPECTOR_10g777 [Gonium pector... [more]
gi|760448443|ref|XP_011401290.1|2.533e-2249.51Chaperone protein dnaJ 10 [Auxenochlorella prototh... [more]
gi|1098425633|gb|OII73758.1|2.620e-2249.50hypothetical protein cubi_03556 [Cryptosporidium u... [more]
gi|302829206|ref|XP_002946170.1|3.235e-2261.11molecular chaperone [Volvox carteri f. nagariensis... [more]
gi|66360219|ref|XP_627223.1|4.976e-2249.50DNAJ'DNAJ protein' [Cryptosporidium parvum Iowa II... [more]
gi|67624473|ref|XP_668519.1|5.895e-2249.50hypothetical protein [Cryptosporidium hominis TU50... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2869rna2869Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications