rna2863, rna2863 (mRNA) Nannochloropsis gaditana

Overview
Namerna2863
Unique Namerna2863
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length603
Alignment locationCM002460.1:102837..103261 +

Link to JBrowse

Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101639g1.6549.mrna
Orig protein idgnl|cribi|Naga_101639g1.6549
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:102837..103261 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101639g1gene2739Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2863rna2863-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27818.1cds2855Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2863 ID=rna2863|Name=rna2863|organism=Nannochloropsis gaditana|type=mRNA|length=603bp
ATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGTCGAGCAGGC
CTCCCTCCAAGCCTTTTCCTCCCCCCCGCCCTCCCCCCCCTCCTCGACCG
CCCCCTCCCACAGCCTTGCCACGCCCATCGCCCGGCTCTCCCATACGGTC
TGCAGTATCGCCGACATGCTCCTAGACATCCTCCATCCCTCCCCCCTGCC
CTCCCTTCCTCCTTCCCTCCCTCCCTCCGAGCGTTCCTCTTTGGAAAGAC
GTCACCGGCACCGACATCAACTTCAAGAACAAGTTTTTGTCTCCCTTCAG
CGCCGCATTCAAAAAGCCATGTCTATGTCGCCCTGCTCCTTGGTCCTCCC
GGGACTCCTCCACCTTCTCCTCCTCCTCTTGCGCGCCTGGCCGTTGCATT
TTAGGCGGCTGGTGGTCGAGGGTCCTGACTCCATCCCTTCTGTGCTTCTC
CAAAAAGCTCTGGAGAAAGATGACAGGGAGGGCGGGAAGGAGGGCGGGAA
GGAGGGCGGGCTGGAATCCAAGCCCTGGTTGACGGCGGCGATCCTCCTGT
GGGACCTGCTCGCGCAACCCGCGTCTTCCCTGGCCACACCGCCCTGGTAC
TGA
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protein sequence of rna2863

>rna2863-protein ID=rna2863-protein|Name=rna2863|organism=Nannochloropsis gaditana|type=polypeptide|length=88bp
MLPSPAAPSPSALQTLLVLMIKHVWELYQQDMKEGGKEGGAEGTSEGGKE
GGSAFLSLIDLLELLGGTLGDLPTGGPSPPSRPQLPGY
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mRNA from alignment at CM002460.1:102837..103261+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2863 ID=rna2863|Name=rna2863|organism=Nannochloropsis gaditana|type=mRNA|length=425bp|location=Sequence derived from alignment at CM002460.1:102837..103261+ (Nannochloropsis gaditana)
atgCTGCCCTCGCctgctgccccctccccttcagcgCTTCAGACCCTGCT
TGTTCTCATGATCAAACACGTCTGGGAGCTCTACCAACAGGAcatgaagg
aaggagggaaggagggcggggcggagggcacgtccgagggagggaaggag
ggaggcagcgctttcctctccctgatTGACCTCCTGGAACTCCTGGGGGG
GACTCTCGGCGACCTTCCCACAGgcggcccatctcctccaagccgccCGT
CTGGTTCCTCagcctgcccgtcctcctcccctccttcccccgcccccgcc
tacctttctctccttcctcctccacaccgTCTTGCCCTGCCCTcggtccc
cgtcctccctccctccctcccccgtgcgCGCCGTCCGGAAAGTGGTGGCA
GCGCAGGCAGCTGCCAGGCTATTGA
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Coding sequence (CDS) from alignment at CM002460.1:102837..103261+

>rna2863 ID=rna2863|Name=rna2863|organism=Nannochloropsis gaditana|type=CDS|length=534bp|location=Sequence derived from alignment at CM002460.1:102837..103261+ (Nannochloropsis gaditana)
atgCTGCCCTCGCctgctgccccctccccttcagcgCTTCAGACCCTGCT
TGTTCTCATGATCAAACACGTCTGGGAGCTCTACCAACAGGAcatgaagg
aaggagggaaggagggcggggcggagggcacgtccgagggagggaaggag
ggaggcagcgctttcctctccctgatTGACCTCCTGGAACTCCTGGGGGG
GACTCTCGGCGACCTTCCCACAGgcggcccatctcctccaagccgccCGC
AGCTGCCAGGCTATTGAatgCTGCCCTCGCctgctgccccctccccttca
gcgCTTCAGACCCTGCTTGTTCTCATGATCAAACACGTCTGGGAGCTCTA
CCAACAGGAcatgaaggaaggagggaaggagggcggggcggagggcacgt
ccgagggagggaaggagggaggcagcgctttcctctccctgatTGACCTC
CTGGAACTCCTGGGGGGGACTCTCGGCGACCTTCCCACAGgcggcccatc
tcctccaagccgccCGCAGCTGCCAGGCTATTGA
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Synonyms
Publications