rna2862, rna2862 (mRNA) Nannochloropsis gaditana

Overview
Namerna2862
Unique Namerna2862
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length749
Alignment locationCM002460.1:100811..102034 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101967g1.7020.mrna
Orig protein idgnl|cribi|Naga_101967g1.7020
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:100811..102034 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_101967g1gene2738Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2862rna2862-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27819.1cds2854Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2862 ID=rna2862|Name=rna2862|organism=Nannochloropsis gaditana|type=mRNA|length=749bp
TTCCTCCCTCCCTCCCTCCCTCCTTCCTTCTCCCAGATCGTGGAGGACGC
CAGCGAAGACGCCCAGCACGGGTCACGCCCTCCTTCCCAACGACACGCCC
GCCTCCTCCCCCTCCTTCCCCCCCTTCTCCTCCTCCTCCACCGCTTCTCC
TCCCGCCAACTTGTCCTCGACTCCCCCTACGAGCCCCTCCCTCCCCCTCT
CCCTCCCGCCCGCCTTCCCCCATCCACCCCCGACCCACAGAACGGCAATG
AGCTCTCCCTCCGCCTGCACGTGCCTCTGGCCAAGCGTTTACTGGGGTTG
TGGAAGGCCTTTGGTTCCCGTCTGGAATGGCTCCCCGCGCAGGTAGCTGC
CACACGCTTTCTCTTTTCGTTGCCTTGGCCCTCGTTGTGCTTTGCATGAC
CGTTACATGACCGTTGCATGACCATTGCATGACCGTTACATGAGCGTTTC
CCCTTTGATCCGTGTTCAGCCACATCACATGGTGCCTCTTTTTTTGGCCT
TTACCCTCCTTGTGCTTCGCATGATTATATCCCCTTTCATCCCTGTATAT
GCAGTCCCTGGTGCCCGTCTGCTTCCTTTCTCCTTCCGCCCGTTCCTCTG
ACCCTCCCTCCCTCCCTCCCTCCCTCGCCCCCTTCCTCCCTCTCTTCCTC
CCTTGTCCTCTGCCAGGTCGGCGAGGGCATTTGGATGTTGTTCCGTGAAA
TCGCCCGCTCTTTGGAGGAGGACCAGGAGGCCATCCTCTTGGCCCCTCC
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protein sequence of rna2862

>rna2862-protein ID=rna2862-protein|Name=rna2862|organism=Nannochloropsis gaditana|type=polypeptide|length=200bp
MQDALALHSVFHVVEQASLQAFSSPPPSPPSSTAPSHSLATPIARLSHTV
CSIADMLLDILHPSPLPSLPPSLPPSERSSLERRHRHRHQLQEQVFVSLQ
RRIQKAMSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVEGPDSIPSVLL
QKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPASSLATPPWY
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mRNA from alignment at CM002460.1:100811..102034+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2862 ID=rna2862|Name=rna2862|organism=Nannochloropsis gaditana|type=mRNA|length=1224bp|location=Sequence derived from alignment at CM002460.1:100811..102034+ (Nannochloropsis gaditana)
ATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGTCGAgcaggc
ctccctccaagccttttcctcccccccgccctcccccccctcctcgaccg
ccccctcccacaGGTTcggtgctggagggcctTTGGCTTTTGTACGGGCA
CCACGTCCTTACCTGACGTtcatcctttttctccctccctccctccctcc
ctccctgcctccctccctcgcgtcctccttcagcCTTGCCACGCCCATCG
CCCGGCTCTCCCATACGGTCTGCAGTATCGCCGACATGCTCCTAGacatc
ctccatccctcccccctgccctcccttcctccttccctccctccctccga
gcgTTCCTCTTTGGAAAGACGTCACCGGCACCGACATCAACTTCAAGAAC
AAGTTTTTGTCTCCCTTCAGCGCCGCATTCAAAAAGCCATGTCTATGTCG
CCCTGCTCCTTGGTCCTCCCGGgactcctccaccttctcctcctcctctt
gcgcGCCTGGCCGTTGCATTTTAGGCGGCTGGTGGTCGAGGTagctttct
tttcctgccttcctttcctccttccctccctccttccctcccacccgccc
tctccttctccttttcactCTTCGCTACGTGTTGTTTACAGTGgttcctc
ccactccctccctccctccctccctccctccctccctccctcccaccacg
aCTTCAGGGTCCTGACTCCATCCCTTCTGTGCTTCTCCAAAAAGCTCTGG
AGAAAGAtgacagggagggcgggaaggagggcgggaaggagggcgggctg
gaaTCCAAGCCCTGGTTGACGGCGGCGATCCTCCTGTGGGACCTGCTCGC
GCAACCCGTTCCACTGCCttcgaagggaaagaaaggaggaaagggaggag
gaagtggaggaggaggaggggaggaagaaatggacaccagggagggggaa
aaagaggaggagggaagggaggacgggagggaggaaggggaacgccAACC
GCTCCTACCTCACACCTTCCTGGACGAGtgcctcaccctcctccttcatc
tcctccacctggcGCCTCccaaccctttccttctccaagccACCTTAACT
TTCCTGGCccgcttgctctcctccgacCGTTACGCCCGGCGTGTCCGAGA
GAAACGTTCCCTGAGCTTgctctttgccctccctgccgcagGCGTCTTCC
CTGGCCACACCGCCCTGGTACTGA
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Coding sequence (CDS) from alignment at CM002460.1:100811..102034+

>rna2862 ID=rna2862|Name=rna2862|organism=Nannochloropsis gaditana|type=CDS|length=2412bp|location=Sequence derived from alignment at CM002460.1:100811..102034+ (Nannochloropsis gaditana)
ATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGTCGAgcaggc
ctccctccaagccttttcctcccccccgccctcccccccctcctcgaccg
ccccctcccacaGcCTTGCCACGCCCATCGCCCGGCTCTCCCATACGGTC
TGCAGTATCGCCGACATGCTCCTAGacatcctccatccctcccccctgcc
ctcccttcctccttccctccctccctccgagcgTTCCTCTTTGGAAAGAC
GTCACCGGCACCGACATCAACTTCAAGAACAAGTTTTTGTCTCCCTTCAG
CGCCGCATTCAAAAAGCCATGTCTATGTCGCCCTGCTCCTTGGTCCTCCC
GGgactcctccaccttctcctcctcctcttgcgcGCCTGGCCGTTGCATT
TTAGGCGGCTGGTGGTCGAGGGTCCTGACTCCATCCCTTCTGTGCTTCTC
CAAAAAGCTCTGGAGAAAGAtgacagggagggcgggaaggagggcgggaa
ggagggcgggctggaaTCCAAGCCCTGGTTGACGGCGGCGATCCTCCTGT
GGGACCTGCTCGCGCAACCCGCGTCTTCCCTGGCCACACCGCCCTGGTAC
TGAATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGTCGAgca
ggcctccctccaagccttttcctcccccccgccctcccccccctcctcga
ccgccccctcccacaGcCTTGCCACGCCCATCGCCCGGCTCTCCCATACG
GTCTGCAGTATCGCCGACATGCTCCTAGacatcctccatccctcccccct
gccctcccttcctccttccctccctccctccgagcgTTCCTCTTTGGAAA
GACGTCACCGGCACCGACATCAACTTCAAGAACAAGTTTTTGTCTCCCTT
CAGCGCCGCATTCAAAAAGCCATGTCTATGTCGCCCTGCTCCTTGGTCCT
CCCGGgactcctccaccttctcctcctcctcttgcgcGCCTGGCCGTTGC
ATTTTAGGCGGCTGGTGGTCGAGGGTCCTGACTCCATCCCTTCTGTGCTT
CTCCAAAAAGCTCTGGAGAAAGAtgacagggagggcgggaaggagggcgg
gaaggagggcgggctggaaTCCAAGCCCTGGTTGACGGCGGCGATCCTCC
TGTGGGACCTGCTCGCGCAACCCGCGTCTTCCCTGGCCACACCGCCCTGG
TACTGAATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGTCGA
gcaggcctccctccaagccttttcctcccccccgccctcccccccctcct
cgaccgccccctcccacaGcCTTGCCACGCCCATCGCCCGGCTCTCCCAT
ACGGTCTGCAGTATCGCCGACATGCTCCTAGacatcctccatccctcccc
cctgccctcccttcctccttccctccctccctccgagcgTTCCTCTTTGG
AAAGACGTCACCGGCACCGACATCAACTTCAAGAACAAGTTTTTGTCTCC
CTTCAGCGCCGCATTCAAAAAGCCATGTCTATGTCGCCCTGCTCCTTGGT
CCTCCCGGgactcctccaccttctcctcctcctcttgcgcGCCTGGCCGT
TGCATTTTAGGCGGCTGGTGGTCGAGGGTCCTGACTCCATCCCTTCTGTG
CTTCTCCAAAAAGCTCTGGAGAAAGAtgacagggagggcgggaaggaggg
cgggaaggagggcgggctggaaTCCAAGCCCTGGTTGACGGCGGCGATCC
TCCTGTGGGACCTGCTCGCGCAACCCGCGTCTTCCCTGGCCACACCGCCC
TGGTACTGAATGCAGGACGCCTTGGCCCTGCACAGTGTCTTCCACGTGGT
CGAgcaggcctccctccaagccttttcctcccccccgccctcccccccct
cctcgaccgccccctcccacaGcCTTGCCACGCCCATCGCCCGGCTCTCC
CATACGGTCTGCAGTATCGCCGACATGCTCCTAGacatcctccatccctc
ccccctgccctcccttcctccttccctccctccctccgagcgTTCCTCTT
TGGAAAGACGTCACCGGCACCGACATCAACTTCAAGAACAAGTTTTTGTC
TCCCTTCAGCGCCGCATTCAAAAAGCCATGTCTATGTCGCCCTGCTCCTT
GGTCCTCCCGGgactcctccaccttctcctcctcctcttgcgcGCCTGGC
CGTTGCATTTTAGGCGGCTGGTGGTCGAGGGTCCTGACTCCATCCCTTCT
GTGCTTCTCCAAAAAGCTCTGGAGAAAGAtgacagggagggcgggaagga
gggcgggaaggagggcgggctggaaTCCAAGCCCTGGTTGACGGCGGCGA
TCCTCCTGTGGGACCTGCTCGCGCAACCCGCGTCTTCCCTGGCCACACCG
CCCTGGTACTGA
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Synonyms
Publications