EWM27819.1, cds2854 (CDS) Nannochloropsis gaditana

Overview
NameEWM27819.1
Unique Namecds2854
TypeCDS
OrganismNannochloropsis gaditana (N. gaditana B-31)
Alignment locationCM002460.1:100811..100923 +
Alignment locationCM002460.1:101044..101350 +
Alignment locationCM002460.1:101518..101667 +
Alignment locationCM002460.1:102002..102034 +

Link to JBrowse

Properties
Property NameValue
Protein idEWM27819.1
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_101967g1.7020.mrna
GbkeyCDS
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:100811..100923 +
CM002460.1supercontigCM002460.1:101044..101350 +
CM002460.1supercontigCM002460.1:101518..101667 +
CM002460.1supercontigCM002460.1:102002..102034 +
Analyses
This CDS is derived from or has results from the following analyses
Analysis NameDate Performed
BLAST analysis for N. gaditana B-312020-04-07
InterPro analysis for N. gaditana B-312020-04-06
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
[Close]
BLAST of EWM27819.1 vs. NCBI_GenBank
Match: gi|585110132|gb|EWM27819.1| (hypothetical protein Naga_101967g1 [Nannochloropsis gaditana])

HSP 1 Score: 389.037 bits (998), Expect = 1.310e-136
Identity = 200/200 (100.00%), Postives = 200/200 (100.00%), Query Frame = 0 
Query:    1 MQDALALHSVFHVVEQASLQAFSSPPPSPPSSTAPSHSLATPIARLSHTVCSIADMLLDILHPSPLPSLPPSLPPSERSSLERRHRHRHQLQEQVFVSLQRRIQKAMSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVEGPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPASSLATPPWY 200
            MQDALALHSVFHVVEQASLQAFSSPPPSPPSSTAPSHSLATPIARLSHTVCSIADMLLDILHPSPLPSLPPSLPPSERSSLERRHRHRHQLQEQVFVSLQRRIQKAMSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVEGPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPASSLATPPWY
Sbjct:    1 MQDALALHSVFHVVEQASLQAFSSPPPSPPSSTAPSHSLATPIARLSHTVCSIADMLLDILHPSPLPSLPPSLPPSERSSLERRHRHRHQLQEQVFVSLQRRIQKAMSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVEGPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPASSLATPPWY 200
[Close]
BLAST of EWM27819.1 vs. NCBI_GenBank
Match: gi|553178474|ref|XP_005852557.1| (hypothetical protein NGA_0687200, partial [Nannochloropsis gaditana CCMP526] >gi|422295976|gb|EKU23275.1| hypothetical protein NGA_0687200, partial [Nannochloropsis gaditana CCMP526])

HSP 1 Score: 152.525 bits (384), Expect = 1.211e-43
Identity = 84/107 (78.50%), Postives = 84/107 (78.50%), Query Frame = 0 
Query:  107 MSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVE----------------------GPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPA 191
            MSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVE                      GPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQP 
Sbjct:    1 MSMSPCSLVLPGLLHLLLLLLRAWPLHFRRLVVEWFLPLPPSLPPSLPPSLPPRLQGPDSIPSVLLQKALEKDDREGGKEGGKEGGLESKPWLTAAILLWDLLAQPV 107
The following BLAST results are available for this feature:
BLAST of EWM27819.1 vs. NCBI_GenBank
Analysis Date: 2020-04-07 (BLAST analysis for N. gaditana B-31)
Total hits: 2
Match NameE-valueIdentityDescription
gi|585110132|gb|EWM27819.1|1.310e-136100.00hypothetical protein Naga_101967g1 [Nannochloropsi... [more]
gi|553178474|ref|XP_005852557.1|1.211e-4378.50hypothetical protein NGA_0687200, partial [Nannoch... [more]
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Relationships

This CDS is a part of the following mRNA feature(s):

Feature NameUnique NameSpeciesType
rna2862rna2862Nannochloropsis gaditana (N. gaditana B-31)mRNA


Sequences
Synonyms
Publications