rna2858, rna2858 (mRNA) Nannochloropsis gaditana

Overview
Namerna2858
Unique Namerna2858
TypemRNA
OrganismNannochloropsis gaditana (N. gaditana B-31)
Sequence length621
Alignment locationCM002460.1:92134..93309 +

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Properties
Property NameValue
Producthypothetical protein
Orig transcript idgnl|cribi|Naga_100989g2.4777.mrna
Orig protein idgnl|cribi|Naga_100989g2.4777
GbkeymRNA
Mutants
Expression
No biomaterial libraries express this feature.
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
CM002460.1supercontigCM002460.1:92134..93309 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gene prediction for N. gaditana B-312014-02-18
Annotated Terms
Homology
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Naga_100989g2gene2734Nannochloropsis gaditana (N. gaditana B-31)gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
rna2858rna2858-proteinNannochloropsis gaditana (N. gaditana B-31)polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
EWM27824.1cds2850Nannochloropsis gaditana (N. gaditana B-31)CDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>rna2858 ID=rna2858|Name=rna2858|organism=Nannochloropsis gaditana|type=mRNA|length=621bp
GCCAGACAGGATAATTCCCAAGCAAACAAAAAATGCGGCATATTCTGTCC
TTGTTTTTGGCACCGACGCTTATGGTGACGGGCTTTCTGTTGCCTCGTCT
GCCTCAGTACCATACCACTAGCCGTGCTGCTTCGCCTTTGCGCATGGTCC
TCCCATCTGCCAAGGAGGGAAAAGGAAAAGTGGCATCCTTCTACCCCTTT
GAAACGTCTTTGGGCGTTAAAGGAAAGAAGGACAACAGTGAAGTCGGAAC
CGACGCTGCCAGACAACTCCTGGGTATGAAAGGGGCTGCCCAAACGGATG
ACTTGCTGAAGATTCGGGTACAGCTGATGAAGCCGGTGACTTGGATCCCA
CTCATTTGGGGTGTGGTCTGCGGTGCTGCGGCGAGCGGGAATTACCACTG
GGCCAATCCGTTCGACCAGGGTAGCCCCGACGCGGTACCCCTATCTCTGG
GTTTGGAGGATGCGGCAAAGGCGGTCACCTGCATGGTCCTCGCCGGGCCC
CTCCTCACTGGCTTCACGCAGACGATCAACGATTGGTACGACAAGGACAT
CGACGCCATCAACGAGCCCTACCGCCCCATTCCCTCCGGCCGCATTTCTG
AGGTGGGGAGGGAGGGAGGGA
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protein sequence of rna2858

>rna2858-protein ID=rna2858-protein|Name=rna2858|organism=Nannochloropsis gaditana|type=polypeptide|length=138bp
MATFPGSSSTKNEPPSCMQPLLHALADVEAQKGRQRQDEALREVLRHFQA
WEYEEKADLQQDWQPALELLHTSLTHTLASHPSLVLVPSPSSPVASPSAF
TVTPPGKKREKEPFGFPVLTPLPSFPPSLPPSLPPSLP
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mRNA from alignment at CM002460.1:92134..93309+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>rna2858 ID=rna2858|Name=rna2858|organism=Nannochloropsis gaditana|type=mRNA|length=1176bp|location=Sequence derived from alignment at CM002460.1:92134..93309+ (Nannochloropsis gaditana)
ATGGCGACCTTTCCTGGGTCTTCAAGCACGAAGGTTGGTGTTACTGTCGA
TGAAACGGcacgtctcttcctccttggttggtggtggaggaggccaattA
TCTTTTCCTACAATCCTGTTCATTGAAATTCCCGACCCCGCCATCAAGCT
CCGTGCACTTTCCTGTTCCATCCCAAATCTTGGTCCCTTGCTCCATCACG
TCGAGAGCTTCCTTACCTtggagtgggaggacgggtcatgcgggaggcgg
ccgcctccccccccctccctcccccgcgtcaCTCCCTCTTAATGATGTCC
TTCCCTATCACTCACGCTGTCTAATCACCCACTGGTTTGCTGGTTTCTAC
GCCCGTTCATCTCCTGGTAAACTCTCGGGACGGATGTCTTACTTTCGcgc
tccacctcgccctccctccctccctccctccctcccagaaTGAGCCGCCT
TCTTGTATGCAGCCTTTGCTGCACGCCTTGGCGGACGTCGAGGCTCAGAA
AGGGCGACAGCGGCAGGACGAAGCACTCAGAGAAGTCCTTCGCCATTTCC
AAGCGTGGGAGTACGAAgagaaggtgggaggaggggggaagggagggagg
aagggaggagggaaagagggaagcaagaaaggaagaagggaggatcGAGG
CCCGTGGGATCGCCTGCCTTCGCATCGCATCTCACCGTCCGTATTCTCCT
GcgccttgcctcccccccaggcGGACCTGCAGCAGGACTGGCAACCTGCC
TTAGAGTTGCTTCATACCTCTCTCACCCATACCCTGGCCTCGCACCCGTC
CCTGGTCCTGgttccctctcccagctcccccgtcgcctccccctccgcct
tcacggTCACCCCCCCGGGAAAAAaacgggagaaagaggtaggtttccct
ccctccctccccatgggCAGCCGTCAAGGCCCgcagctttccctccctcc
ctccctccctccttccctccctcccacgacccttccctccttccctcctt
ccatccctccctcccgcctgcctttTTTTTCCAGTTCCCTTGGCGCTTga
cccccctcttccctcacccccccaccgccctttctccctttctagCCTTT
TGGCTTTCCCGTCCTCacccctttgccctccttccctccctccctccctc
cctccctccctccctcccttccttga
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Coding sequence (CDS) from alignment at CM002460.1:92134..93309+

>rna2858 ID=rna2858|Name=rna2858|organism=Nannochloropsis gaditana|type=CDS|length=1668bp|location=Sequence derived from alignment at CM002460.1:92134..93309+ (Nannochloropsis gaditana)
ATGGCGACCTTTCCTGGGTCTTCAAGCACGAAGaaTGAGCCGCCTTCTTG
TATGCAGCCTTTGCTGCACGCCTTGGCGGACGTCGAGGCTCAGAAAGGGC
GACAGCGGCAGGACGAAGCACTCAGAGAAGTCCTTCGCCATTTCCAAGCG
TGGGAGTACGAAgagaaggcGGACCTGCAGCAGGACTGGCAACCTGCCTT
AGAGTTGCTTCATACCTCTCTCACCCATACCCTGGCCTCGCACCCGTCCC
TGGTCCTGgttccctctcccagctcccccgtcgcctccccctccgccttc
acggTCACCCCCCCGGGAAAAAaacgggagaaagagCCTTTTGGCTTTCC
CGTCCTCacccctttgccctccttccctccctccctccctccctccctcc
ctccctcccttccttgaATGGCGACCTTTCCTGGGTCTTCAAGCACGAAG
aaTGAGCCGCCTTCTTGTATGCAGCCTTTGCTGCACGCCTTGGCGGACGT
CGAGGCTCAGAAAGGGCGACAGCGGCAGGACGAAGCACTCAGAGAAGTCC
TTCGCCATTTCCAAGCGTGGGAGTACGAAgagaaggcGGACCTGCAGCAG
GACTGGCAACCTGCCTTAGAGTTGCTTCATACCTCTCTCACCCATACCCT
GGCCTCGCACCCGTCCCTGGTCCTGgttccctctcccagctcccccgtcg
cctccccctccgccttcacggTCACCCCCCCGGGAAAAAaacgggagaaa
gagCCTTTTGGCTTTCCCGTCCTCacccctttgccctccttccctccctc
cctccctccctccctccctccctcccttccttgaATGGCGACCTTTCCTG
GGTCTTCAAGCACGAAGaaTGAGCCGCCTTCTTGTATGCAGCCTTTGCTG
CACGCCTTGGCGGACGTCGAGGCTCAGAAAGGGCGACAGCGGCAGGACGA
AGCACTCAGAGAAGTCCTTCGCCATTTCCAAGCGTGGGAGTACGAAgaga
aggcGGACCTGCAGCAGGACTGGCAACCTGCCTTAGAGTTGCTTCATACC
TCTCTCACCCATACCCTGGCCTCGCACCCGTCCCTGGTCCTGgttccctc
tcccagctcccccgtcgcctccccctccgccttcacggTCACCCCCCCGG
GAAAAAaacgggagaaagagCCTTTTGGCTTTCCCGTCCTCacccctttg
ccctccttccctccctccctccctccctccctccctccctcccttccttg
aATGGCGACCTTTCCTGGGTCTTCAAGCACGAAGaaTGAGCCGCCTTCTT
GTATGCAGCCTTTGCTGCACGCCTTGGCGGACGTCGAGGCTCAGAAAGGG
CGACAGCGGCAGGACGAAGCACTCAGAGAAGTCCTTCGCCATTTCCAAGC
GTGGGAGTACGAAgagaaggcGGACCTGCAGCAGGACTGGCAACCTGCCT
TAGAGTTGCTTCATACCTCTCTCACCCATACCCTGGCCTCGCACCCGTCC
CTGGTCCTGgttccctctcccagctcccccgtcgcctccccctccgcctt
cacggTCACCCCCCCGGGAAAAAaacgggagaaagagCCTTTTGGCTTTC
CCGTCCTCacccctttgccctccttccctccctccctccctccctccctc
cctccctcccttccttga
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Synonyms
Publications